Wall clock time and date at job start Tue Mar 31 2020 14:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47375 * 2 1 4 4 C 1.46500 * 120.00171 * 274.94367 * 3 2 1 5 5 C 1.50703 * 109.47251 * 263.11578 * 4 3 2 6 6 H 1.07994 * 119.99600 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99819 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00678 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99749 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47251 * 60.00149 * 9 7 5 11 11 H 1.48499 * 109.47017 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47338 * 300.00382 * 9 7 5 13 13 C 1.34776 * 119.99806 * 94.93834 * 3 2 1 14 14 O 1.21352 * 119.99904 * 3.70051 * 13 3 2 15 15 C 1.49381 * 119.99749 * 183.69137 * 13 3 2 16 16 O 1.21358 * 119.99866 * 354.27370 * 15 13 3 17 17 N 1.34776 * 120.00013 * 174.26997 * 15 13 3 18 18 C 1.39356 * 120.00157 * 180.02562 * 17 15 13 19 19 C 1.42050 * 126.89878 * 359.97438 * 18 17 15 20 20 C 1.35235 * 103.95572 * 179.97438 * 19 18 17 21 21 C 1.50697 * 126.69282 * 180.26189 * 20 19 18 22 22 C 1.53000 * 109.46970 * 59.71143 * 21 20 19 23 23 C 1.53006 * 109.47508 * 179.71232 * 21 20 19 24 24 C 1.53003 * 109.47089 * 299.71245 * 21 20 19 25 25 O 1.34087 * 106.61976 * 0.02562 * 20 19 18 26 26 N 1.20918 * 111.75608 * 359.97438 * 25 20 19 27 27 H 1.09004 * 109.47263 * 59.99884 * 1 2 3 28 28 H 1.09005 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47588 * 300.00235 * 1 2 3 30 30 H 1.09001 * 109.47437 * 240.00083 * 2 1 3 31 31 H 1.09004 * 109.47263 * 120.00116 * 2 1 3 32 32 H 1.09009 * 109.46837 * 23.11365 * 4 3 2 33 33 H 1.08995 * 109.47528 * 143.11074 * 4 3 2 34 34 H 0.96992 * 120.00382 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99766 * 0.02562 * 17 15 13 36 36 H 1.07995 * 128.01934 * 359.97438 * 19 18 17 37 37 H 1.09000 * 109.47423 * 60.00143 * 22 21 20 38 38 H 1.09003 * 109.46886 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.47289 * 300.00210 * 22 21 20 40 40 H 1.09001 * 109.46985 * 60.00115 * 23 21 20 41 41 H 1.08995 * 109.47097 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.46824 * 299.99819 * 23 21 20 43 43 H 1.09005 * 109.46967 * 59.99914 * 24 21 20 44 44 H 1.09003 * 109.46828 * 179.97438 * 24 21 20 45 45 H 1.09001 * 109.47290 * 299.99815 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5889 2.0257 -1.7341 6 1 4.3190 1.4853 -1.1501 7 6 3.9642 2.6392 -2.9104 8 7 3.0749 3.2969 -3.6220 9 14 5.7362 2.5374 -3.4928 10 1 6.1098 1.1145 -3.6952 11 1 5.8792 3.2743 -4.7741 12 1 6.6284 3.1429 -2.4718 13 6 2.3377 1.9830 1.1629 14 8 2.2850 1.3600 2.2030 15 6 2.7568 3.4168 1.1714 16 8 2.9102 4.0103 0.1240 17 7 2.9644 4.0513 2.3422 18 6 3.3549 5.3890 2.3502 19 6 3.5760 6.2196 1.2193 20 6 3.9327 7.4097 1.7535 21 6 4.2795 8.6675 0.9994 22 6 3.0861 9.0934 0.1418 23 6 4.6170 9.7812 1.9928 24 6 5.4875 8.4050 0.0979 25 8 3.9125 7.2538 3.0851 26 7 3.5911 6.1315 3.4001 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5042 1.6644 -2.0136 33 1 1.8858 3.1527 -1.1149 34 1 3.3391 3.7287 -4.4494 35 1 2.8421 3.5767 3.1793 36 1 3.4813 5.9608 0.1751 37 1 2.2255 9.2805 0.7841 38 1 3.3371 10.0030 -0.4039 39 1 2.8457 8.3000 -0.5659 40 1 5.4672 9.4778 2.6037 41 1 4.8673 10.6910 1.4473 42 1 3.7563 9.9682 2.6350 43 1 5.2470 7.6116 -0.6099 44 1 5.7380 9.3147 -0.4479 45 1 6.3377 8.1015 0.7088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124090001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:33 Heat of formation + Delta-G solvation = 0.631644 kcal Electronic energy + Delta-G solvation = -28481.128971 eV Core-core repulsion = 24502.928767 eV Total energy + Delta-G solvation = -3978.200203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.68742 -40.38379 -38.24729 -37.33503 -36.02083 -34.90715 -32.72708 -31.99321 -30.60086 -30.52892 -27.47951 -27.36403 -27.16540 -25.37348 -23.40729 -23.09815 -22.69451 -21.48271 -19.76633 -19.21937 -17.44048 -17.13659 -17.00764 -16.62210 -16.45730 -15.72817 -15.27960 -15.02243 -14.60482 -14.25409 -14.18276 -14.03430 -13.88421 -13.52911 -13.24656 -13.03223 -12.46048 -12.44542 -12.42770 -12.12836 -11.77708 -11.77454 -11.70055 -11.56540 -11.40432 -11.18332 -11.12200 -11.01623 -10.89938 -10.86835 -10.65198 -10.52032 -10.04823 -9.75500 -9.22350 -8.89452 -8.61483 -8.35861 -7.92215 -6.09496 -4.12743 1.49178 1.90303 2.47446 2.66315 3.19621 3.27759 3.31820 3.35430 3.77914 3.87189 4.34319 4.40516 4.75132 4.78005 4.83134 4.89761 5.20122 5.26544 5.28355 5.46741 5.47626 5.52569 5.61313 5.62783 5.66010 5.74016 5.75435 5.78777 5.88833 6.00872 6.10799 6.14770 6.19045 6.22016 6.26722 6.49184 6.60850 6.62471 7.15288 7.32585 7.37685 7.79081 7.99958 8.11024 8.18880 8.48483 8.53741 8.88644 9.50631 10.98999 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004748 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.329217 B = 5895.530697 C = 7736.880092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.555 5.555 4 C 0.221 3.779 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.071 3.929 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.513 3.487 14 O -0.558 6.558 15 C 0.500 3.500 16 O -0.428 6.428 17 N -0.620 5.620 18 C 0.256 3.744 19 C -0.215 4.215 20 C -0.019 4.019 21 C 0.018 3.982 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.143 4.143 25 O 0.095 5.905 26 N -0.398 5.398 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.423 0.577 36 H 0.194 0.806 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 8.552 7.453 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.285 5.285 4 C 0.102 3.898 5 C -0.560 4.560 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.439 6.439 15 C 0.281 3.719 16 O -0.294 6.294 17 N -0.275 5.275 18 C 0.007 3.993 19 C -0.238 4.238 20 C -0.082 4.082 21 C 0.017 3.983 22 C -0.199 4.199 23 C -0.202 4.202 24 C -0.201 4.201 25 O 0.035 5.965 26 N -0.115 5.115 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.261 0.739 36 H 0.211 0.789 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.851 8.515 8.218 11.865 hybrid contribution 0.945 -0.516 -0.818 1.352 sum 0.094 7.999 7.400 10.898 Atomic orbital electron populations 1.22114 0.96096 1.01741 1.02276 1.21474 0.93919 0.82689 1.03362 1.48298 1.58573 1.13550 1.08080 1.20114 0.97785 0.93968 0.77911 1.21190 0.94163 1.33817 1.06833 0.92802 1.24788 0.97248 0.94793 0.96325 1.69903 1.33679 1.34121 1.15021 0.86662 0.85206 0.78180 0.77987 1.20303 1.21136 1.20266 1.19407 0.79817 0.86572 0.84695 1.90671 1.55405 1.65733 1.32069 1.20512 0.79553 0.88901 0.82939 1.90872 1.42854 1.66294 1.29344 1.42287 1.67058 1.07008 1.11171 1.20480 1.00393 0.87514 0.90874 1.22799 1.08003 0.91029 1.01952 1.24313 1.02271 0.98203 0.83452 1.19130 0.97123 0.88198 0.93853 1.21947 0.96305 1.02185 0.99502 1.21892 1.02373 0.97363 0.98603 1.21958 0.96106 1.02796 0.99206 1.84752 1.65352 1.23667 1.22698 1.74022 1.23845 0.92287 1.21368 0.92111 0.91856 0.92810 0.89771 0.90244 0.94794 0.90849 0.92723 0.73892 0.78870 0.92152 0.91269 0.91273 0.91909 0.91575 0.91919 0.91239 0.91266 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.24 37.15 0.38 -2.01 16 2 C 0.11 1.86 6.18 -4.04 -0.02 1.84 16 3 N -0.55 -11.50 2.48 -175.59 -0.43 -11.94 16 4 C 0.22 5.29 4.79 -5.19 -0.02 5.26 16 5 C -0.52 -13.79 8.31 -34.44 -0.29 -14.08 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.51 10.57 7.67 -11.62 -0.09 10.48 16 14 O -0.56 -11.52 15.98 5.49 0.09 -11.43 16 15 C 0.50 10.11 7.73 -11.62 -0.09 10.02 16 16 O -0.43 -9.66 9.65 5.49 0.05 -9.61 16 17 N -0.62 -10.99 5.41 -11.86 -0.06 -11.05 16 18 C 0.26 4.54 8.17 -154.93 -1.27 3.28 16 19 C -0.22 -3.66 9.27 -39.19 -0.36 -4.03 16 20 C -0.02 -0.27 5.76 -35.38 -0.20 -0.47 16 21 C 0.02 0.20 0.94 -155.66 -0.15 0.05 16 22 C -0.14 -1.44 8.36 37.16 0.31 -1.13 16 23 C -0.15 -1.28 8.08 37.16 0.30 -0.98 16 24 C -0.14 -1.53 8.36 37.16 0.31 -1.22 16 25 O 0.09 1.44 10.66 17.05 0.18 1.62 16 26 N -0.40 -6.72 12.10 31.18 0.38 -6.34 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 31 H 0.08 1.34 7.24 -51.93 -0.38 0.96 16 32 H 0.03 0.84 8.02 -51.92 -0.42 0.42 16 33 H 0.07 1.89 5.41 -51.93 -0.28 1.61 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 35 H 0.42 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.19 3.63 6.22 -52.49 -0.33 3.31 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -29.80 376.63 -6.46 -36.27 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.77 Total: 5.94 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.29 Total: 8.85 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.61 Total: -53.34 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.32 Total: -19.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.80 -6.46 -36.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124090001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.897 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds