Wall clock time and date at job start Tue Mar 31 2020 14:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47375 * 2 1 4 4 C 1.46500 * 120.00171 * 274.94367 * 3 2 1 5 5 C 1.50703 * 109.47251 * 263.11578 * 4 3 2 6 6 H 1.07994 * 119.99600 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99819 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00678 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99749 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47251 * 60.00149 * 9 7 5 11 11 H 1.48499 * 109.47017 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47338 * 300.00382 * 9 7 5 13 13 C 1.34776 * 119.99806 * 94.93834 * 3 2 1 14 14 O 1.21352 * 119.99904 * 3.70051 * 13 3 2 15 15 C 1.49381 * 119.99749 * 183.69137 * 13 3 2 16 16 O 1.21358 * 119.99866 * 354.27370 * 15 13 3 17 17 N 1.34776 * 120.00013 * 174.26997 * 15 13 3 18 18 C 1.39356 * 120.00157 * 180.02562 * 17 15 13 19 19 C 1.42050 * 126.89878 * 359.97438 * 18 17 15 20 20 C 1.35235 * 103.95572 * 179.97438 * 19 18 17 21 21 C 1.50697 * 126.69282 * 180.26189 * 20 19 18 22 22 C 1.53000 * 109.46970 * 59.71143 * 21 20 19 23 23 C 1.53006 * 109.47508 * 179.71232 * 21 20 19 24 24 C 1.53003 * 109.47089 * 299.71245 * 21 20 19 25 25 O 1.34087 * 106.61976 * 0.02562 * 20 19 18 26 26 N 1.20918 * 111.75608 * 359.97438 * 25 20 19 27 27 H 1.09004 * 109.47263 * 59.99884 * 1 2 3 28 28 H 1.09005 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47588 * 300.00235 * 1 2 3 30 30 H 1.09001 * 109.47437 * 240.00083 * 2 1 3 31 31 H 1.09004 * 109.47263 * 120.00116 * 2 1 3 32 32 H 1.09009 * 109.46837 * 23.11365 * 4 3 2 33 33 H 1.08995 * 109.47528 * 143.11074 * 4 3 2 34 34 H 0.96992 * 120.00382 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99766 * 0.02562 * 17 15 13 36 36 H 1.07995 * 128.01934 * 359.97438 * 19 18 17 37 37 H 1.09000 * 109.47423 * 60.00143 * 22 21 20 38 38 H 1.09003 * 109.46886 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.47289 * 300.00210 * 22 21 20 40 40 H 1.09001 * 109.46985 * 60.00115 * 23 21 20 41 41 H 1.08995 * 109.47097 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.46824 * 299.99819 * 23 21 20 43 43 H 1.09005 * 109.46967 * 59.99914 * 24 21 20 44 44 H 1.09003 * 109.46828 * 179.97438 * 24 21 20 45 45 H 1.09001 * 109.47290 * 299.99815 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5889 2.0257 -1.7341 6 1 4.3190 1.4853 -1.1501 7 6 3.9642 2.6392 -2.9104 8 7 3.0749 3.2969 -3.6220 9 14 5.7362 2.5374 -3.4928 10 1 6.1098 1.1145 -3.6952 11 1 5.8792 3.2743 -4.7741 12 1 6.6284 3.1429 -2.4718 13 6 2.3377 1.9830 1.1629 14 8 2.2850 1.3600 2.2030 15 6 2.7568 3.4168 1.1714 16 8 2.9102 4.0103 0.1240 17 7 2.9644 4.0513 2.3422 18 6 3.3549 5.3890 2.3502 19 6 3.5760 6.2196 1.2193 20 6 3.9327 7.4097 1.7535 21 6 4.2795 8.6675 0.9994 22 6 3.0861 9.0934 0.1418 23 6 4.6170 9.7812 1.9928 24 6 5.4875 8.4050 0.0979 25 8 3.9125 7.2538 3.0851 26 7 3.5911 6.1315 3.4001 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5042 1.6644 -2.0136 33 1 1.8858 3.1527 -1.1149 34 1 3.3391 3.7287 -4.4494 35 1 2.8421 3.5767 3.1793 36 1 3.4813 5.9608 0.1751 37 1 2.2255 9.2805 0.7841 38 1 3.3371 10.0030 -0.4039 39 1 2.8457 8.3000 -0.5659 40 1 5.4672 9.4778 2.6037 41 1 4.8673 10.6910 1.4473 42 1 3.7563 9.9682 2.6350 43 1 5.2470 7.6116 -0.6099 44 1 5.7380 9.3147 -0.4479 45 1 6.3377 8.1015 0.7088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124090001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:33 Heat of formation + Delta-G solvation = -16.083790 kcal Electronic energy + Delta-G solvation = -28481.853807 eV Core-core repulsion = 24502.928767 eV Total energy + Delta-G solvation = -3978.925039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.01922 -42.00995 -39.85684 -38.25780 -37.65625 -36.44881 -34.70498 -33.37931 -32.07383 -31.82277 -29.10295 -28.24941 -28.20318 -26.89160 -25.03386 -24.72399 -23.96207 -22.83702 -21.07189 -20.71692 -18.90832 -18.76577 -18.51074 -18.17038 -17.96831 -17.23999 -16.94413 -16.70792 -16.15595 -15.66778 -15.41734 -15.12428 -14.97387 -14.89386 -14.56360 -14.50865 -14.31593 -13.67475 -13.52858 -13.23806 -13.19674 -13.17893 -12.93352 -12.75716 -12.70942 -12.58591 -12.58034 -12.36189 -12.21111 -12.08210 -12.02305 -11.82784 -11.78806 -11.70074 -10.73141 -10.48155 -10.28900 -10.02291 -9.65036 -8.15512 -6.24888 0.02548 0.51074 0.96925 1.21555 1.38963 1.40400 1.47370 1.99760 2.15362 2.31265 2.45495 3.09587 3.17822 3.29148 3.71226 3.87911 3.91712 3.94667 4.13251 4.19015 4.32625 4.44233 4.49840 4.69927 4.73963 4.74826 4.79351 4.86910 4.92326 4.98337 5.00003 5.00637 5.08345 5.17072 5.25302 5.26976 5.35752 5.39304 5.43283 5.49722 5.73314 5.81565 6.09179 6.22944 6.57448 6.77095 6.93525 7.18262 7.41573 8.92258 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004748 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.329217 B = 5895.530697 C = 7736.880092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.559 5.559 4 C 0.239 3.761 5 C -0.529 4.529 6 H 0.043 0.957 7 C 0.028 3.972 8 N -0.915 5.915 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.512 3.488 14 O -0.557 6.557 15 C 0.501 3.499 16 O -0.457 6.457 17 N -0.608 5.608 18 C 0.237 3.763 19 C -0.241 4.241 20 C 0.006 3.994 21 C 0.017 3.983 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.143 4.143 25 O 0.106 5.894 26 N -0.401 5.401 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.024 0.976 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.431 0.569 36 H 0.173 0.827 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.097 0.903 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 9.538 7.968 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.289 5.289 4 C 0.119 3.881 5 C -0.567 4.567 6 H 0.061 0.939 7 C -0.172 4.172 8 N -0.555 5.555 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.294 3.706 14 O -0.439 6.439 15 C 0.282 3.718 16 O -0.325 6.325 17 N -0.263 5.263 18 C -0.011 4.011 19 C -0.264 4.264 20 C -0.058 4.058 21 C 0.016 3.984 22 C -0.198 4.198 23 C -0.199 4.199 24 C -0.200 4.200 25 O 0.046 5.954 26 N -0.117 5.117 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.271 0.729 36 H 0.190 0.810 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.116 0.884 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.205 9.467 8.779 12.913 hybrid contribution 0.737 -0.776 -0.918 1.410 sum 0.532 8.691 7.861 11.731 Atomic orbital electron populations 1.22046 0.93838 1.03722 1.01644 1.21745 0.95783 0.80753 1.03752 1.48297 1.58803 1.14766 1.07045 1.19659 0.96339 0.93279 0.78855 1.21359 0.95035 1.33505 1.06820 0.93859 1.25458 1.00667 0.94549 0.96549 1.69993 1.35272 1.34823 1.15392 0.85796 0.80911 0.78490 0.77550 1.19431 1.20299 1.20696 1.19461 0.79737 0.86723 0.84682 1.90660 1.55548 1.65834 1.31854 1.20521 0.79274 0.88847 0.83192 1.90878 1.44434 1.66763 1.30419 1.42080 1.66259 1.07218 1.10787 1.20629 1.01431 0.87549 0.91475 1.22628 1.10339 0.92404 1.01064 1.24904 0.99477 0.98606 0.82776 1.19407 0.97562 0.87287 0.94191 1.21960 0.96100 1.02580 0.99152 1.21901 1.02482 0.97267 0.98217 1.21975 0.95818 1.03376 0.98825 1.84735 1.64628 1.22941 1.23140 1.74016 1.23842 0.92658 1.21166 0.92886 0.88551 0.93224 0.89547 0.89623 0.95754 0.92721 0.92601 0.72948 0.80970 0.91866 0.88471 0.93523 0.91908 0.88968 0.91673 0.93727 0.88390 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 10.24 71.98 0.74 -3.57 16 2 C 0.10 3.42 6.18 86.38 0.53 3.95 16 3 N -0.56 -23.45 2.48 -827.81 -2.05 -25.51 16 4 C 0.24 11.74 4.79 85.63 0.41 12.16 16 5 C -0.53 -28.48 8.31 25.60 0.21 -28.26 16 6 H 0.04 2.38 7.81 -2.91 -0.02 2.35 16 7 C 0.03 1.52 5.46 84.65 0.46 1.99 16 8 N -0.92 -51.80 13.29 21.44 0.28 -51.51 16 9 Si 0.95 43.37 29.54 68.60 2.03 45.40 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.51 21.34 7.67 87.25 0.67 22.01 16 14 O -0.56 -22.85 15.98 -3.25 -0.05 -22.90 16 15 C 0.50 20.85 7.73 87.25 0.67 21.53 16 16 O -0.46 -21.59 9.65 -3.27 -0.03 -21.62 16 17 N -0.61 -22.00 5.41 -310.81 -1.68 -23.68 16 18 C 0.24 8.55 8.17 134.15 1.10 9.64 16 19 C -0.24 -8.48 9.27 22.52 0.21 -8.27 16 20 C 0.01 0.18 5.76 24.99 0.14 0.33 16 21 C 0.02 0.34 0.94 -52.93 -0.05 0.29 16 22 C -0.14 -2.65 8.36 71.98 0.60 -2.05 16 23 C -0.14 -2.07 8.08 71.98 0.58 -1.49 16 24 C -0.14 -2.86 8.36 71.98 0.60 -2.25 16 25 O 0.11 3.13 10.66 71.19 0.76 3.88 16 26 N -0.40 -13.38 12.10 -56.34 -0.68 -14.06 16 27 H 0.05 1.55 8.14 -2.38 -0.02 1.54 16 28 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 2.87 8.11 -2.39 -0.02 2.85 16 31 H 0.09 2.79 7.24 -2.38 -0.02 2.77 16 32 H 0.02 1.24 8.02 -2.38 -0.02 1.22 16 33 H 0.06 2.95 5.41 -2.39 -0.01 2.93 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.43 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.17 6.93 6.22 -2.91 -0.02 6.91 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.09 8.03 -2.38 -0.02 1.07 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.04 1.11 8.04 -2.38 -0.02 1.09 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -64.35 376.63 5.69 -58.66 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.24 Total: 25.35 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 6.88 Total: 26.00 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -4.13 Total: -114.76 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: 0.68 Total: -40.64 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.35 5.69 -58.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124090001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.572 kcal (2) G-P(sol) polarization free energy of solvation -64.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds