Wall clock time and date at job start Tue Mar 31 2020 13:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46721 * 2 1 4 4 H 1.08999 * 109.47319 * 55.00523 * 3 2 1 5 5 C 1.50701 * 109.46732 * 175.00139 * 3 2 1 6 6 H 1.07995 * 120.00039 * 120.00476 * 5 3 2 7 7 C 1.37881 * 119.99734 * 299.99766 * 5 3 2 8 8 N 1.31507 * 120.00545 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99551 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47239 * 90.00463 * 9 7 5 11 11 H 1.48500 * 109.46875 * 210.00155 * 9 7 5 12 12 H 1.48496 * 109.47462 * 329.99937 * 9 7 5 13 13 N 1.46498 * 109.47244 * 294.99960 * 3 2 1 14 14 C 1.34780 * 119.99858 * 85.00333 * 13 3 2 15 15 O 1.21351 * 120.00092 * 359.97438 * 14 13 3 16 16 C 1.49379 * 119.99665 * 179.97438 * 14 13 3 17 17 O 1.21359 * 119.99860 * 0.02562 * 16 14 13 18 18 N 1.34772 * 119.99458 * 179.97438 * 16 14 13 19 19 C 1.39361 * 119.99658 * 180.02562 * 18 16 14 20 20 C 1.42058 * 126.89924 * 0.27488 * 19 18 16 21 21 C 1.35243 * 103.95377 * 180.17705 * 20 19 18 22 22 C 1.50697 * 126.68751 * 179.88079 * 21 20 19 23 23 C 1.52997 * 109.47466 * 59.71378 * 22 21 20 24 24 C 1.53006 * 109.47239 * 299.71090 * 22 21 20 25 25 C 1.52999 * 109.46961 * 179.71728 * 22 21 20 26 26 O 1.34084 * 106.61832 * 359.62052 * 21 20 19 27 27 N 1.20909 * 111.75568 * 0.25785 * 26 21 20 28 28 H 1.09001 * 109.47098 * 299.99906 * 1 2 3 29 29 H 1.08992 * 109.47144 * 59.99986 * 1 2 3 30 30 H 1.08996 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47098 * 240.00094 * 2 1 3 32 32 H 1.09005 * 109.47041 * 119.99832 * 2 1 3 33 33 H 0.97001 * 120.00829 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99940 * 265.00608 * 13 3 2 35 35 H 0.96993 * 120.00496 * 0.02562 * 18 16 14 36 36 H 1.07997 * 128.01942 * 0.09509 * 20 19 18 37 37 H 1.09002 * 109.47153 * 59.99773 * 23 22 21 38 38 H 1.09001 * 109.46832 * 299.99964 * 23 22 21 39 39 H 1.09004 * 109.47261 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.46955 * 180.02562 * 24 22 21 41 41 H 1.09000 * 109.47050 * 300.00336 * 24 22 21 42 42 H 1.09001 * 109.47002 * 60.00070 * 24 22 21 43 43 H 1.09002 * 109.46716 * 299.99650 * 25 22 21 44 44 H 1.09000 * 109.47486 * 59.99568 * 25 22 21 45 45 H 1.09001 * 109.47362 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4063 0.3367 2.1729 9 14 6.0050 0.8814 1.3817 10 1 6.4417 2.1143 2.0849 11 1 6.4396 -0.3097 2.1549 12 1 6.6136 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3401 2.6319 -0.4338 16 6 0.0401 3.3328 -2.6431 17 8 0.8152 3.3648 -3.5764 18 7 -1.1774 3.8992 -2.7583 19 6 -1.5461 4.5222 -3.9491 20 6 -0.7623 4.6408 -5.1280 21 6 -1.5588 5.3230 -5.9819 22 6 -1.2242 5.7318 -7.3933 23 6 -0.9243 4.4852 -8.2279 24 6 0.0029 6.6457 -7.3823 25 6 -2.4116 6.4800 -8.0026 26 8 -2.7063 5.5597 -5.3299 27 7 -2.6846 5.1112 -4.2073 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0618 2.9495 34 1 2.2719 2.1232 -1.9978 35 1 -1.7970 3.8732 -2.0126 36 1 0.2381 4.2727 -5.3015 37 1 -1.7985 3.8341 -8.2357 38 1 -0.0783 3.9522 -7.7938 39 1 -0.6827 4.7809 -9.2489 40 1 0.2446 6.9417 -8.4030 41 1 -0.2108 7.5339 -6.7877 42 1 0.8489 6.1128 -6.9482 43 1 -3.2859 5.8290 -8.0104 44 1 -2.6254 7.3682 -7.4080 45 1 -2.1699 6.7753 -9.0236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128508923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:09 Heat of formation + Delta-G solvation = -35.642435 kcal Electronic energy + Delta-G solvation = -27502.724351 eV Core-core repulsion = 23522.951185 eV Total energy + Delta-G solvation = -3979.773166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.07740 -42.02160 -40.03718 -38.25453 -37.40791 -36.79572 -34.38886 -33.44786 -32.86039 -31.86447 -29.25910 -28.24631 -28.16685 -26.80834 -25.04356 -24.48485 -23.47212 -22.08115 -21.31346 -21.09841 -19.87045 -18.81903 -18.37965 -18.10010 -17.94798 -17.32986 -17.08639 -16.89335 -16.11415 -15.70591 -15.53771 -15.11169 -14.97009 -14.91627 -14.64032 -14.56291 -13.95896 -13.54946 -13.21975 -13.20873 -13.19333 -13.05958 -13.00678 -12.77832 -12.70142 -12.59160 -12.56103 -12.22609 -12.16071 -12.11464 -12.00738 -11.77050 -11.61214 -11.12728 -10.81180 -10.56662 -10.51575 -10.12172 -9.89630 -8.19335 -6.36426 -0.11116 0.48005 0.87044 1.19537 1.45556 1.46852 1.56876 1.99379 2.09626 2.33530 2.49037 3.10772 3.13852 3.38256 3.66527 3.83082 3.91408 3.96619 4.17351 4.42110 4.47134 4.52906 4.62883 4.69338 4.78593 4.80597 4.89441 4.99865 5.00983 5.01686 5.06779 5.13867 5.19787 5.29294 5.30236 5.36217 5.39139 5.43146 5.53073 5.57694 5.72264 5.80443 6.09610 6.28605 6.62347 6.68441 7.03513 7.15315 7.35253 8.85886 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.002617 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.119867 B =10698.610372 C =11505.575019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.071 0.929 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.263 1.263 13 N -0.664 5.664 14 C 0.503 3.497 15 O -0.542 6.542 16 C 0.529 3.471 17 O -0.501 6.501 18 N -0.603 5.603 19 C 0.229 3.771 20 C -0.236 4.236 21 C 0.006 3.994 22 C 0.016 3.984 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.146 4.146 26 O 0.106 5.894 27 N -0.402 5.402 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.267 0.733 34 H 0.411 0.589 35 H 0.434 0.566 36 H 0.188 0.812 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 9.926 -21.392 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.089 0.911 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.793 3.207 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.187 1.187 13 N -0.314 5.314 14 C 0.282 3.718 15 O -0.421 6.421 16 C 0.311 3.689 17 O -0.373 6.373 18 N -0.255 5.255 19 C -0.019 4.019 20 C -0.259 4.259 21 C -0.058 4.058 22 C 0.014 3.986 23 C -0.198 4.198 24 C -0.199 4.199 25 C -0.203 4.203 26 O 0.045 5.955 27 N -0.116 5.116 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.274 0.726 36 H 0.205 0.795 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.292 9.991 -20.482 24.610 hybrid contribution 1.444 -0.462 0.783 1.706 sum -7.849 9.529 -19.699 23.247 Atomic orbital electron populations 1.21724 0.96684 0.99738 1.00373 1.21832 0.94014 0.98520 1.01886 1.18689 0.94230 0.89592 0.80120 0.96595 1.21509 0.91065 1.39538 1.06962 0.91115 1.25679 1.03157 0.94170 0.94912 1.70004 1.37055 1.37940 1.09795 0.85398 0.79229 0.77504 0.78552 1.20409 1.20816 1.18704 1.46208 1.13935 1.52690 1.18560 1.19628 0.83991 0.81015 0.87202 1.90763 1.51503 1.59697 1.40164 1.20345 0.81174 0.78660 0.88757 1.90671 1.50631 1.56391 1.39632 1.42021 1.16883 1.52960 1.13685 1.20694 0.92497 0.99103 0.89632 1.22670 1.04235 1.07904 0.91049 1.25017 0.84939 0.97802 0.98048 1.19436 0.98151 0.97792 0.83183 1.21969 1.02099 0.95254 1.00509 1.21970 0.95141 0.98484 1.04259 1.21925 0.95971 1.00130 1.02269 1.84770 1.34840 1.58423 1.17499 1.74072 1.19699 1.18497 0.99345 0.94571 0.94184 0.93202 0.93898 0.90223 0.92367 0.75305 0.72618 0.79513 0.92353 0.92477 0.88623 0.88616 0.92404 0.92498 0.92053 0.92083 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.51 71.98 0.61 -4.76 16 2 C -0.12 -5.79 5.45 30.60 0.17 -5.62 16 3 C 0.28 13.48 2.24 44.25 0.10 13.58 16 4 H 0.02 0.91 7.58 -2.39 -0.02 0.90 16 5 C -0.55 -28.33 8.73 25.60 0.22 -28.10 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -49.90 11.29 21.45 0.24 -49.66 16 9 Si 0.97 41.03 29.54 68.60 2.03 43.06 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.66 -27.12 5.01 -447.50 -2.24 -29.37 16 14 C 0.50 19.27 6.46 87.25 0.56 19.83 16 15 O -0.54 -22.97 13.61 -3.25 -0.04 -23.02 16 16 C 0.53 17.41 7.85 87.25 0.68 18.09 16 17 O -0.50 -16.70 13.75 -3.28 -0.05 -16.74 16 18 N -0.60 -17.89 5.41 -310.80 -1.68 -19.57 16 19 C 0.23 6.61 8.17 134.16 1.10 7.70 16 20 C -0.24 -5.97 9.27 22.53 0.21 -5.76 16 21 C 0.01 0.12 5.76 24.99 0.14 0.27 16 22 C 0.02 0.20 0.94 -52.93 -0.05 0.15 16 23 C -0.14 -1.54 8.36 71.98 0.60 -0.94 16 24 C -0.14 -1.56 8.36 71.98 0.60 -0.96 16 25 C -0.15 -1.40 8.08 71.98 0.58 -0.82 16 26 O 0.11 2.55 10.66 71.23 0.76 3.31 16 27 N -0.40 -11.32 12.10 -56.33 -0.68 -12.01 16 28 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 29 H 0.04 1.61 5.64 -2.39 -0.01 1.59 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 4.17 5.95 -2.38 -0.01 4.15 16 33 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.41 15.35 8.01 -92.71 -0.74 14.61 16 35 H 0.43 12.10 8.29 -92.71 -0.77 11.33 16 36 H 0.19 4.85 6.22 -2.91 -0.02 4.83 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.74 8.03 -2.39 -0.02 0.72 16 39 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.75 8.04 -2.39 -0.02 0.73 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -60.73 371.10 3.83 -56.90 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.48 Total: 32.85 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.98 Total: 14.25 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.37 Total: -110.60 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: 0.67 Total: -36.45 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -60.73 3.83 -56.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128508923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.256 kcal (2) G-P(sol) polarization free energy of solvation -60.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds