Wall clock time and date at job start Tue Mar 31 2020 14:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42898 * 109.47376 * 2 1 4 4 C 1.35671 * 117.00027 * 180.02562 * 3 2 1 5 5 C 1.38815 * 119.64312 * 180.02562 * 4 3 2 6 6 C 1.38550 * 119.26132 * 179.97438 * 5 4 3 7 7 C 1.38549 * 118.55936 * 359.72692 * 6 5 4 8 8 C 1.38884 * 119.22345 * 0.51171 * 7 6 5 9 9 N 1.39389 * 119.65743 * 179.75059 * 8 7 6 10 10 C 1.34784 * 119.99587 * 185.06096 * 9 8 7 11 11 O 1.21569 * 120.00307 * 354.86874 * 10 9 8 12 12 N 1.34776 * 119.99608 * 174.86497 * 10 9 8 13 13 C 1.46504 * 119.99774 * 179.72491 * 12 10 9 14 14 C 1.50704 * 109.46787 * 90.00173 * 13 12 10 15 15 H 1.08004 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99756 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00372 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99711 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47115 * 60.00479 * 18 16 14 20 20 H 1.48510 * 109.46916 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47239 * 300.00251 * 18 16 14 22 22 C 1.46501 * 120.00232 * 0.02562 * 12 10 9 23 23 C 1.53000 * 109.47323 * 89.99960 * 22 12 10 24 24 O 1.42900 * 109.47153 * 64.99509 * 23 22 12 25 25 C 1.42902 * 113.99753 * 180.02562 * 24 23 22 26 26 N 1.32292 * 119.64669 * 359.97438 * 4 3 2 27 27 H 1.09006 * 109.47491 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47439 * 299.99794 * 1 2 3 29 29 H 1.09007 * 109.47533 * 59.99718 * 1 2 3 30 30 H 1.09003 * 109.46981 * 239.99932 * 2 1 3 31 31 H 1.09007 * 109.47087 * 120.00578 * 2 1 3 32 32 H 1.08002 * 120.36998 * 359.97346 * 5 4 3 33 33 H 1.07999 * 120.72218 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.38658 * 180.28661 * 7 6 5 35 35 H 0.96996 * 120.00235 * 5.07081 * 9 8 7 36 36 H 1.08999 * 109.47150 * 210.00082 * 13 12 10 37 37 H 1.08992 * 109.47208 * 330.00542 * 13 12 10 38 38 H 0.96999 * 120.00428 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47420 * 209.99973 * 22 12 10 40 40 H 1.09001 * 109.47398 * 329.99857 * 22 12 10 41 41 H 1.08993 * 109.47537 * 185.00365 * 23 22 12 42 42 H 1.09008 * 109.46877 * 305.00200 * 23 22 12 43 43 H 1.08993 * 109.47328 * 60.00707 * 25 24 23 44 44 H 1.09008 * 109.46959 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47446 * 300.00026 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3513 1.5249 -0.0005 5 6 3.8739 2.8110 0.0000 6 6 5.2487 2.9833 0.0000 7 6 6.0573 1.8582 0.0052 8 6 5.4688 0.6002 -0.0005 9 7 6.2737 -0.5378 -0.0005 10 6 5.7139 -1.7591 -0.1090 11 8 4.5037 -1.8749 -0.1129 12 7 6.4958 -2.8518 -0.2133 13 6 5.8874 -4.1799 -0.3252 14 6 5.6654 -4.5098 -1.7788 15 1 5.9495 -3.8013 -2.5428 16 6 5.1006 -5.7165 -2.1333 17 7 4.7551 -6.5795 -1.2029 18 14 4.8260 -6.1258 -3.9351 19 1 6.1281 -6.1157 -4.6490 20 1 4.2092 -7.4720 -4.0486 21 1 3.9219 -5.1150 -4.5401 22 6 7.9542 -2.7123 -0.2082 23 6 8.4694 -2.7954 1.2300 24 8 8.2126 -4.1000 1.7534 25 6 8.6569 -4.2842 3.0991 26 7 4.1507 0.4708 -0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 3.2163 3.6676 0.0004 33 1 5.6807 3.9731 0.0008 34 1 7.1326 1.9583 0.0100 35 1 7.2365 -0.4508 0.0776 36 1 6.5510 -4.9220 0.1186 37 1 4.9319 -4.1871 0.1991 38 1 4.3574 -7.4283 -1.4523 39 1 8.3979 -3.5129 -0.7999 40 1 8.2285 -1.7486 -0.6373 41 1 9.5422 -2.6032 1.2434 42 1 7.9594 -2.0515 1.8422 43 1 8.1505 -3.5714 3.7497 44 1 8.4258 -5.2993 3.4223 45 1 9.7336 -4.1229 3.1515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130112329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:44 Heat of formation + Delta-G solvation = -76.422882 kcal Electronic energy + Delta-G solvation = -28148.929725 eV Core-core repulsion = 24167.388187 eV Total energy + Delta-G solvation = -3981.541538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99979 -40.86577 -39.13214 -38.66291 -36.55609 -35.83882 -34.66040 -33.20870 -32.65838 -31.11373 -30.32449 -28.74320 -27.11898 -25.64271 -24.74082 -24.12181 -23.86569 -23.11901 -20.90002 -20.00438 -18.80784 -18.54837 -18.19021 -17.33042 -17.21345 -17.06026 -16.83751 -16.72281 -16.42830 -16.25910 -15.80065 -15.58734 -15.00073 -14.88080 -14.69274 -14.31187 -14.17372 -13.62482 -13.55850 -13.43702 -13.27981 -13.07159 -13.01413 -12.86443 -12.76690 -12.55268 -12.45724 -12.16999 -12.05204 -11.94888 -11.69696 -11.31489 -11.30092 -10.61852 -10.56366 -10.53081 -10.11666 -9.45048 -8.94047 -8.17394 -6.32099 0.23396 0.47935 1.34739 1.39712 1.46210 1.58039 2.11083 2.24712 2.39968 2.85406 2.93271 2.99972 3.11649 3.51443 4.03273 4.04927 4.10262 4.12735 4.19024 4.23405 4.31854 4.38584 4.43186 4.46722 4.51651 4.52328 4.57848 4.85254 4.86351 4.89697 4.90118 4.95884 5.08378 5.15115 5.28244 5.29882 5.34598 5.58559 5.66785 5.80188 5.97766 6.12130 6.30523 6.34971 6.76627 6.85241 7.26319 7.34980 7.74693 8.88921 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.004640 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.107022 B = 6033.200397 C = 7972.072872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 O -0.315 6.315 4 C 0.313 3.687 5 C -0.226 4.226 6 C -0.002 4.002 7 C -0.234 4.234 8 C 0.389 3.611 9 N -0.659 5.659 10 C 0.683 3.317 11 O -0.580 6.580 12 N -0.607 5.607 13 C 0.292 3.708 14 C -0.541 4.541 15 H 0.049 0.951 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.259 1.259 20 H -0.277 1.277 21 H -0.282 1.282 22 C 0.102 3.898 23 C 0.044 3.956 24 O -0.416 6.416 25 C 0.029 3.971 26 N -0.576 5.576 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.162 0.838 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.427 0.573 36 H 0.032 0.968 37 H -0.014 1.014 38 H 0.266 0.734 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 19.869 5.634 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.002 3.998 3 O -0.223 6.223 4 C 0.133 3.867 5 C -0.248 4.248 6 C -0.027 4.027 7 C -0.258 4.258 8 C 0.158 3.842 9 N -0.311 5.311 10 C 0.383 3.617 11 O -0.454 6.454 12 N -0.342 5.342 13 C 0.170 3.830 14 C -0.580 4.580 15 H 0.067 0.933 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.789 3.211 19 H -0.183 1.183 20 H -0.202 1.202 21 H -0.208 1.208 22 C -0.020 4.020 23 C -0.033 4.033 24 O -0.335 6.335 25 C -0.067 4.067 26 N -0.305 5.305 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.180 0.820 33 H 0.212 0.788 34 H 0.196 0.804 35 H 0.269 0.731 36 H 0.050 0.950 37 H 0.004 0.996 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.768 18.651 5.539 20.599 hybrid contribution 0.360 -0.450 -0.489 0.756 sum 7.128 18.200 5.050 20.188 Atomic orbital electron populations 1.21781 0.90270 1.03681 1.03925 1.22403 0.96303 0.80413 1.00637 1.86150 1.17589 1.30586 1.87984 1.20164 0.83901 0.90271 0.92329 1.21318 0.97497 0.94314 1.11712 1.21680 0.90709 1.00369 0.89964 1.21683 1.03355 0.89088 1.11630 1.18308 0.86390 0.86653 0.92886 1.42815 1.10530 1.02606 1.75166 1.16281 0.85470 0.81007 0.78894 1.90945 1.14014 1.84618 1.55861 1.47402 1.06406 1.05907 1.74460 1.18517 0.91865 0.77668 0.94902 1.21719 1.41229 1.01823 0.93244 0.93252 1.25808 0.94907 0.95986 1.02280 1.70064 1.42849 1.09067 1.34735 0.85527 0.78885 0.77153 0.79540 1.18348 1.20195 1.20789 1.21867 0.79367 1.04360 0.96444 1.23217 1.01086 0.84696 0.94314 1.88049 1.83139 1.32608 1.29751 1.22846 0.99430 1.02144 0.82299 1.67032 1.06108 1.34517 1.22878 0.89778 0.90419 0.90765 0.94639 0.94161 0.82048 0.78793 0.80393 0.73117 0.94976 0.99595 0.92547 0.89833 0.86389 0.88363 0.93435 0.94109 0.90163 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 10.28 71.98 0.74 -2.95 16 2 C 0.08 2.86 6.03 71.98 0.43 3.29 16 3 O -0.32 -10.94 10.11 -89.87 -0.91 -11.85 16 4 C 0.31 10.66 7.48 84.76 0.63 11.29 16 5 C -0.23 -5.24 10.04 22.48 0.23 -5.01 16 6 C 0.00 -0.04 10.16 22.42 0.23 0.19 16 7 C -0.23 -4.62 9.93 22.50 0.22 -4.40 16 8 C 0.39 12.51 7.42 132.86 0.99 13.50 16 9 N -0.66 -21.25 5.22 -322.27 -1.68 -22.93 16 10 C 0.68 30.98 8.24 179.05 1.47 32.45 16 11 O -0.58 -32.92 14.18 -3.93 -0.06 -32.97 16 12 N -0.61 -26.97 2.42 -844.21 -2.04 -29.02 16 13 C 0.29 16.68 4.98 85.63 0.43 17.11 16 14 C -0.54 -32.67 9.39 25.60 0.24 -32.43 16 15 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 18 Si 0.96 46.78 29.54 68.60 2.03 48.81 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 22 C 0.10 3.13 5.53 86.38 0.48 3.61 16 23 C 0.04 1.13 6.28 71.98 0.45 1.58 16 24 O -0.42 -14.15 9.50 -148.98 -1.42 -15.57 16 25 C 0.03 0.71 11.01 113.37 1.25 1.96 16 26 N -0.58 -23.00 6.73 -306.14 -2.06 -25.06 16 27 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 32 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 34 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.43 9.26 6.50 -92.71 -0.60 8.66 16 36 H 0.03 1.91 7.09 -2.39 -0.02 1.89 16 37 H -0.01 -0.94 7.42 -2.39 -0.02 -0.96 16 38 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 39 H 0.08 2.79 8.07 -2.39 -0.02 2.78 16 40 H 0.12 2.46 6.44 -2.39 -0.02 2.44 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -90.62 381.72 2.79 -87.83 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.39 Total: 17.67 kcal Atomic # 6 Polarization: 32.95 SS G_CDS: 8.25 Total: 41.21 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -5.50 Total: -135.12 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -2.38 Total: -60.39 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -90.62 2.79 -87.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130112329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.408 kcal (2) G-P(sol) polarization free energy of solvation -90.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds