Wall clock time and date at job start Tue Mar 31 2020 14:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47262 * 2 1 4 4 C 1.50701 * 109.46813 * 119.99667 * 2 1 3 5 5 H 1.08007 * 119.99973 * 119.99800 * 4 2 1 6 6 C 1.37879 * 120.00165 * 299.99797 * 4 2 1 7 7 N 1.31508 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99655 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47124 * 90.00211 * 8 6 4 10 10 H 1.48503 * 109.47024 * 210.00006 * 8 6 4 11 11 H 1.48497 * 109.47345 * 329.99928 * 8 6 4 12 12 N 1.46495 * 109.46920 * 239.99540 * 2 1 3 13 13 C 1.46498 * 120.00430 * 299.99963 * 12 2 1 14 14 C 1.34775 * 119.99875 * 120.00800 * 12 2 1 15 15 O 1.21353 * 120.00098 * 3.63113 * 14 12 2 16 16 C 1.49377 * 120.00037 * 183.63732 * 14 12 2 17 17 O 1.21362 * 120.00261 * 354.16343 * 16 14 12 18 18 N 1.34776 * 120.00308 * 174.16417 * 16 14 12 19 19 C 1.39357 * 120.00677 * 180.02562 * 18 16 14 20 20 C 1.42055 * 126.89433 * 0.25412 * 19 18 16 21 21 C 1.35242 * 103.95308 * 180.16464 * 20 19 18 22 22 C 1.50700 * 126.68921 * 179.91019 * 21 20 19 23 23 C 1.52999 * 109.46990 * 59.71083 * 22 21 20 24 24 C 1.53008 * 109.47221 * 299.71388 * 22 21 20 25 25 C 1.52997 * 109.47193 * 179.70981 * 22 21 20 26 26 O 1.34075 * 106.61761 * 359.64867 * 21 20 19 27 27 N 1.20916 * 111.75950 * 0.24100 * 26 21 20 28 28 H 1.09000 * 109.46899 * 59.99631 * 1 2 3 29 29 H 1.08994 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46874 * 300.00266 * 1 2 3 31 31 H 0.96996 * 120.00375 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47350 * 263.99628 * 13 12 2 33 33 H 1.09005 * 109.46970 * 23.99588 * 13 12 2 34 34 H 1.08998 * 109.47216 * 143.99274 * 13 12 2 35 35 H 0.97008 * 119.99576 * 0.02562 * 18 16 14 36 36 H 1.08001 * 128.02112 * 0.09376 * 20 19 18 37 37 H 1.08994 * 109.47171 * 60.00215 * 23 22 21 38 38 H 1.09003 * 109.47442 * 299.99843 * 23 22 21 39 39 H 1.09002 * 109.46830 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.47111 * 179.97438 * 24 22 21 41 41 H 1.09004 * 109.46503 * 299.99902 * 24 22 21 42 42 H 1.09002 * 109.47325 * 59.99556 * 24 22 21 43 43 H 1.08994 * 109.47322 * 300.00001 * 25 22 21 44 44 H 1.09008 * 109.46970 * 60.00209 * 25 22 21 45 45 H 1.09002 * 109.46993 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3444 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0358 -2.0832 15 8 3.1410 1.1050 -1.8591 16 6 3.2240 -0.7142 -3.3424 17 8 2.9663 -1.8870 -3.5186 18 7 3.8989 -0.0239 -4.2829 19 6 4.3003 -0.6566 -5.4579 20 6 4.0737 -2.0123 -5.8169 21 6 4.6548 -2.1293 -7.0324 22 6 4.7157 -3.3700 -7.8856 23 6 3.2950 -3.8361 -8.2099 24 6 5.4543 -4.4748 -7.1273 25 6 5.4596 -3.0588 -9.1859 26 8 5.1611 -0.9247 -7.3329 27 7 4.9575 -0.1207 -6.4531 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7081 1.1610 3.4843 32 1 2.4675 -2.7353 -1.0659 33 1 0.7431 -2.3284 -0.8949 34 1 1.5193 -2.2598 -2.4952 35 1 4.1052 0.9134 -4.1419 36 1 3.5580 -2.7732 -5.2499 37 1 2.7688 -3.0492 -8.7501 38 1 2.7650 -4.0579 -7.2836 39 1 3.3391 -4.7338 -8.8266 40 1 5.4979 -5.3723 -7.7442 41 1 6.4665 -4.1426 -6.8963 42 1 4.9243 -4.6964 -6.2009 43 1 4.9334 -2.2719 -9.7261 44 1 6.4718 -2.7267 -8.9548 45 1 5.5040 -3.9563 -9.8028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132348737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:16 Heat of formation + Delta-G solvation = 2.831486 kcal Electronic energy + Delta-G solvation = -27741.801453 eV Core-core repulsion = 23763.696642 eV Total energy + Delta-G solvation = -3978.104811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.00439 -40.67358 -38.36907 -37.61867 -36.24631 -35.26535 -32.87237 -32.31063 -30.87037 -29.60695 -27.72484 -27.65531 -26.46755 -25.44222 -25.10162 -23.59220 -22.58738 -21.06608 -20.11145 -19.18493 -17.74202 -17.40125 -17.19013 -16.86837 -16.45373 -15.84878 -15.68422 -15.27753 -14.77157 -14.46691 -14.43963 -14.24773 -13.89040 -13.66122 -13.25129 -12.72989 -12.69794 -12.68175 -12.49965 -12.09312 -12.04845 -11.84106 -11.77340 -11.64575 -11.45489 -11.38311 -11.17058 -11.13763 -10.90545 -10.86176 -10.74362 -10.30136 -10.25137 -9.55090 -9.31042 -9.01138 -8.92947 -8.52263 -7.84370 -6.16430 -4.24992 1.16518 1.57224 2.21641 2.40312 2.90758 3.23522 3.30187 3.32460 3.55584 3.73766 4.08561 4.32577 4.47309 4.51090 4.57752 4.62552 4.88828 4.95652 5.15614 5.20383 5.25043 5.32427 5.40240 5.49415 5.49622 5.59119 5.70431 5.79770 5.89900 5.92166 5.95301 6.14153 6.25626 6.47115 6.62181 6.67019 6.81998 6.90483 7.14731 7.27647 7.59551 7.67086 7.88613 8.01504 8.20176 8.25159 8.47284 8.79387 9.41482 10.89096 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.002640 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.078962 B =10604.343626 C =10976.896186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.254 3.746 3 H 0.068 0.932 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.547 5.547 13 C 0.070 3.930 14 C 0.498 3.502 15 O -0.531 6.531 16 C 0.519 3.481 17 O -0.493 6.493 18 N -0.612 5.612 19 C 0.250 3.750 20 C -0.219 4.219 21 C -0.015 4.015 22 C 0.017 3.983 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.147 4.147 26 O 0.101 5.899 27 N -0.389 5.389 28 H 0.014 0.986 29 H 0.034 0.966 30 H 0.098 0.902 31 H 0.265 0.735 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.430 0.570 36 H 0.191 0.809 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -9.931 -20.954 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.278 5.278 13 C -0.072 4.072 14 C 0.278 3.722 15 O -0.409 6.409 16 C 0.302 3.698 17 O -0.365 6.365 18 N -0.265 5.265 19 C 0.001 3.999 20 C -0.242 4.242 21 C -0.079 4.079 22 C 0.015 3.985 23 C -0.199 4.199 24 C -0.199 4.199 25 C -0.204 4.204 26 O 0.040 5.960 27 N -0.105 5.105 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.269 0.731 36 H 0.208 0.792 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.215 -8.862 -20.965 23.351 hybrid contribution 0.070 -0.543 1.430 1.531 sum 5.284 -9.405 -19.535 22.316 Atomic orbital electron populations 1.22124 0.97437 0.99890 1.01216 1.19222 0.91352 0.94616 0.79306 0.91469 1.21261 1.32286 1.13237 0.89926 0.91986 1.24883 0.94789 0.94958 0.99024 1.69861 1.36050 1.22539 1.24022 0.86435 0.78670 0.79910 0.82057 1.20524 1.21025 1.19804 1.48283 1.45160 1.12616 1.21710 1.22174 1.01243 0.81191 1.02633 1.19324 0.82247 0.86740 0.83939 1.90751 1.55747 1.17601 1.76812 1.21070 0.77374 0.86699 0.84627 1.90585 1.51796 1.15749 1.78377 1.42307 1.54396 1.15849 1.13947 1.20508 0.98705 0.91544 0.89167 1.22655 1.08098 0.96404 0.97014 1.24364 0.98232 0.88936 0.96385 1.19164 0.97863 0.87742 0.93704 1.21942 0.93731 1.01630 1.02579 1.21947 1.00477 0.96934 1.00554 1.21903 1.00649 1.02352 0.95501 1.84790 1.59608 1.15757 1.35797 1.74078 1.21985 1.15028 0.99365 0.96716 0.94652 0.88343 0.92503 0.92777 0.90900 0.89479 0.73094 0.79217 0.92006 0.91587 0.91121 0.91121 0.91997 0.91575 0.91783 0.91784 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.96 37.16 0.33 -3.09 16 2 C 0.25 6.30 2.62 -69.08 -0.18 6.12 16 3 H 0.07 1.89 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -14.00 8.37 -34.44 -0.29 -14.29 16 5 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 12 N -0.55 -11.65 2.75 -175.80 -0.48 -12.13 16 13 C 0.07 1.26 8.76 59.85 0.52 1.79 16 14 C 0.50 10.14 7.73 -11.62 -0.09 10.05 16 15 O -0.53 -12.08 15.82 5.49 0.09 -11.99 16 16 C 0.52 8.83 7.74 -11.62 -0.09 8.74 16 17 O -0.49 -8.17 10.41 5.49 0.06 -8.12 16 18 N -0.61 -9.36 5.41 -11.86 -0.06 -9.43 16 19 C 0.25 3.68 8.17 -154.93 -1.27 2.41 16 20 C -0.22 -2.82 9.27 -39.19 -0.36 -3.18 16 21 C -0.02 -0.16 5.76 -35.38 -0.20 -0.37 16 22 C 0.02 0.12 0.94 -155.66 -0.15 -0.02 16 23 C -0.14 -0.91 8.36 37.16 0.31 -0.60 16 24 C -0.14 -0.94 8.36 37.16 0.31 -0.63 16 25 C -0.15 -0.90 8.08 37.16 0.30 -0.60 16 26 O 0.10 1.27 10.66 17.09 0.18 1.46 16 27 N -0.39 -5.65 12.10 31.18 0.38 -5.27 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.03 0.75 6.67 -51.93 -0.35 0.41 16 30 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.28 6.44 -51.93 -0.33 0.95 16 34 H 0.09 1.42 5.35 -51.94 -0.28 1.14 16 35 H 0.43 6.22 8.31 -40.82 -0.34 5.88 16 36 H 0.19 2.45 6.22 -52.49 -0.33 2.12 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.46 8.03 -51.93 -0.42 0.05 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -29.56 369.02 -6.09 -35.65 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.47 Total: 4.36 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.95 Total: 8.00 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.46 Total: -50.61 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.33 Total: -18.65 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.56 -6.09 -35.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132348737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.484 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds