Wall clock time and date at job start Tue Mar 31 2020 14:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47262 * 2 1 4 4 C 1.50701 * 109.46813 * 119.99667 * 2 1 3 5 5 H 1.08007 * 119.99973 * 119.99800 * 4 2 1 6 6 C 1.37879 * 120.00165 * 299.99797 * 4 2 1 7 7 N 1.31508 * 120.00043 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99655 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47124 * 90.00211 * 8 6 4 10 10 H 1.48503 * 109.47024 * 210.00006 * 8 6 4 11 11 H 1.48497 * 109.47345 * 329.99928 * 8 6 4 12 12 N 1.46495 * 109.46920 * 239.99540 * 2 1 3 13 13 C 1.46498 * 120.00430 * 299.99963 * 12 2 1 14 14 C 1.34775 * 119.99875 * 120.00800 * 12 2 1 15 15 O 1.21353 * 120.00098 * 3.63113 * 14 12 2 16 16 C 1.49377 * 120.00037 * 183.63732 * 14 12 2 17 17 O 1.21362 * 120.00261 * 354.16343 * 16 14 12 18 18 N 1.34776 * 120.00308 * 174.16417 * 16 14 12 19 19 C 1.39357 * 120.00677 * 180.02562 * 18 16 14 20 20 C 1.42055 * 126.89433 * 0.25412 * 19 18 16 21 21 C 1.35242 * 103.95308 * 180.16464 * 20 19 18 22 22 C 1.50700 * 126.68921 * 179.91019 * 21 20 19 23 23 C 1.52999 * 109.46990 * 59.71083 * 22 21 20 24 24 C 1.53008 * 109.47221 * 299.71388 * 22 21 20 25 25 C 1.52997 * 109.47193 * 179.70981 * 22 21 20 26 26 O 1.34075 * 106.61761 * 359.64867 * 21 20 19 27 27 N 1.20916 * 111.75950 * 0.24100 * 26 21 20 28 28 H 1.09000 * 109.46899 * 59.99631 * 1 2 3 29 29 H 1.08994 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46874 * 300.00266 * 1 2 3 31 31 H 0.96996 * 120.00375 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47350 * 263.99628 * 13 12 2 33 33 H 1.09005 * 109.46970 * 23.99588 * 13 12 2 34 34 H 1.08998 * 109.47216 * 143.99274 * 13 12 2 35 35 H 0.97008 * 119.99576 * 0.02562 * 18 16 14 36 36 H 1.08001 * 128.02112 * 0.09376 * 20 19 18 37 37 H 1.08994 * 109.47171 * 60.00215 * 23 22 21 38 38 H 1.09003 * 109.47442 * 299.99843 * 23 22 21 39 39 H 1.09002 * 109.46830 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.47111 * 179.97438 * 24 22 21 41 41 H 1.09004 * 109.46503 * 299.99902 * 24 22 21 42 42 H 1.09002 * 109.47325 * 59.99556 * 24 22 21 43 43 H 1.08994 * 109.47322 * 300.00001 * 25 22 21 44 44 H 1.09008 * 109.46970 * 60.00209 * 25 22 21 45 45 H 1.09002 * 109.46993 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3444 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0358 -2.0832 15 8 3.1410 1.1050 -1.8591 16 6 3.2240 -0.7142 -3.3424 17 8 2.9663 -1.8870 -3.5186 18 7 3.8989 -0.0239 -4.2829 19 6 4.3003 -0.6566 -5.4579 20 6 4.0737 -2.0123 -5.8169 21 6 4.6548 -2.1293 -7.0324 22 6 4.7157 -3.3700 -7.8856 23 6 3.2950 -3.8361 -8.2099 24 6 5.4543 -4.4748 -7.1273 25 6 5.4596 -3.0588 -9.1859 26 8 5.1611 -0.9247 -7.3329 27 7 4.9575 -0.1207 -6.4531 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7081 1.1610 3.4843 32 1 2.4675 -2.7353 -1.0659 33 1 0.7431 -2.3284 -0.8949 34 1 1.5193 -2.2598 -2.4952 35 1 4.1052 0.9134 -4.1419 36 1 3.5580 -2.7732 -5.2499 37 1 2.7688 -3.0492 -8.7501 38 1 2.7650 -4.0579 -7.2836 39 1 3.3391 -4.7338 -8.8266 40 1 5.4979 -5.3723 -7.7442 41 1 6.4665 -4.1426 -6.8963 42 1 4.9243 -4.6964 -6.2009 43 1 4.9334 -2.2719 -9.7261 44 1 6.4718 -2.7267 -8.9548 45 1 5.5040 -3.9563 -9.8028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132348737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:16 Heat of formation + Delta-G solvation = -14.173330 kcal Electronic energy + Delta-G solvation = -27742.538837 eV Core-core repulsion = 23763.696642 eV Total energy + Delta-G solvation = -3978.842195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.06673 -42.13247 -39.94056 -38.24189 -37.78098 -36.76246 -34.77664 -33.44138 -31.85430 -31.49612 -28.27201 -28.14908 -27.96238 -27.36365 -26.66406 -24.65986 -23.70945 -22.55047 -21.16010 -20.72164 -18.88078 -18.80612 -18.37697 -18.34233 -17.98561 -17.37682 -17.19211 -16.77598 -16.23559 -15.52723 -15.46325 -15.07581 -14.95482 -14.86961 -14.56011 -14.52385 -14.11842 -13.61124 -13.43418 -13.19164 -13.17360 -13.04369 -12.99651 -12.77049 -12.74059 -12.58224 -12.54755 -12.36729 -12.21316 -12.18928 -12.06547 -11.99441 -11.75532 -11.25300 -10.61611 -10.50041 -10.48529 -10.11525 -9.57809 -8.18882 -6.35266 -0.11802 0.49117 0.85092 1.19747 1.41945 1.43384 1.53258 2.00555 2.04260 2.28288 2.43455 3.02591 3.10312 3.22281 3.66540 3.83562 3.92858 3.98038 4.18665 4.37764 4.44289 4.56312 4.70584 4.76519 4.80143 4.81869 4.85383 4.90862 4.96737 5.01748 5.02923 5.03322 5.12478 5.17309 5.30623 5.34671 5.35530 5.40789 5.44744 5.59095 5.63348 5.90553 6.06758 6.28348 6.50671 6.67748 6.87904 7.17156 7.35393 8.85792 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.002640 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.078962 B =10604.343626 C =10976.896186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.258 3.742 3 H 0.024 0.976 4 C -0.543 4.543 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.964 3.036 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.264 1.264 12 N -0.555 5.555 13 C 0.074 3.926 14 C 0.493 3.507 15 O -0.562 6.562 16 C 0.533 3.467 17 O -0.487 6.487 18 N -0.605 5.605 19 C 0.230 3.770 20 C -0.233 4.233 21 C 0.005 3.995 22 C 0.016 3.984 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.146 4.146 26 O 0.106 5.894 27 N -0.404 5.404 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.267 0.733 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.432 0.568 36 H 0.191 0.809 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -12.395 -22.483 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.157 3.843 3 H 0.042 0.958 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.789 3.211 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.188 1.188 12 N -0.285 5.285 13 C -0.068 4.068 14 C 0.274 3.726 15 O -0.442 6.442 16 C 0.315 3.685 17 O -0.359 6.359 18 N -0.257 5.257 19 C -0.018 4.018 20 C -0.256 4.256 21 C -0.059 4.059 22 C 0.015 3.985 23 C -0.198 4.198 24 C -0.198 4.198 25 C -0.203 4.203 26 O 0.044 5.956 27 N -0.118 5.118 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.271 0.729 36 H 0.208 0.792 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.617 -11.341 -22.524 25.836 hybrid contribution -0.004 0.223 1.783 1.797 sum 5.614 -11.118 -20.741 24.194 Atomic orbital electron populations 1.21925 0.96178 1.00648 1.00640 1.18874 0.92272 0.92645 0.80502 0.95827 1.21496 1.32447 1.13288 0.90894 0.92182 1.25669 0.94906 0.95596 1.01823 1.69985 1.36829 1.23637 1.24698 0.85460 0.77870 0.79163 0.78577 1.20774 1.20358 1.18786 1.48240 1.45427 1.13829 1.21041 1.22313 1.01385 0.79140 1.03944 1.19824 0.81472 0.86436 0.84827 1.90728 1.56689 1.19084 1.77736 1.20133 0.78056 0.86501 0.83835 1.90579 1.51994 1.15215 1.78145 1.42061 1.53820 1.15849 1.13973 1.20685 0.99712 0.92412 0.89027 1.22689 1.09262 0.95647 0.97978 1.25031 0.95864 0.89070 0.95953 1.19433 0.99044 0.86187 0.93860 1.21965 0.92646 1.02532 1.02645 1.21971 0.99800 0.97452 1.00620 1.21927 1.00052 1.03438 0.94924 1.84770 1.59315 1.16325 1.35184 1.74078 1.22245 1.15904 0.99608 0.95478 0.93102 0.90664 0.92390 0.92534 0.90559 0.87554 0.72865 0.79154 0.92394 0.92280 0.88685 0.88658 0.92521 0.92340 0.92081 0.92182 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.29 8.96 71.98 0.64 -5.65 16 2 C 0.26 13.06 2.62 44.25 0.12 13.18 16 3 H 0.02 1.40 6.91 -2.39 -0.02 1.38 16 4 C -0.54 -29.01 8.37 25.60 0.21 -28.80 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.14 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -51.05 11.32 21.45 0.24 -50.81 16 8 Si 0.96 42.35 29.54 68.60 2.03 44.37 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 N -0.56 -23.76 2.75 -828.47 -2.28 -26.04 16 13 C 0.07 2.56 8.76 127.77 1.12 3.68 16 14 C 0.49 20.39 7.73 87.25 0.67 21.06 16 15 O -0.56 -26.49 15.82 -3.26 -0.05 -26.54 16 16 C 0.53 17.95 7.74 87.25 0.68 18.62 16 17 O -0.49 -15.58 10.41 -3.28 -0.03 -15.62 16 18 N -0.60 -18.48 5.41 -310.82 -1.68 -20.16 16 19 C 0.23 6.64 8.17 134.16 1.10 7.73 16 20 C -0.23 -5.74 9.27 22.53 0.21 -5.53 16 21 C 0.00 0.10 5.76 24.99 0.14 0.24 16 22 C 0.02 0.20 0.94 -52.93 -0.05 0.15 16 23 C -0.14 -1.44 8.36 71.98 0.60 -0.84 16 24 C -0.14 -1.50 8.36 71.98 0.60 -0.90 16 25 C -0.15 -1.39 8.08 71.98 0.58 -0.80 16 26 O 0.11 2.54 10.66 71.31 0.76 3.30 16 27 N -0.40 -11.49 12.10 -56.35 -0.68 -12.17 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 2.15 6.67 -2.39 -0.02 2.13 16 30 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 31 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.58 6.44 -2.38 -0.02 2.57 16 34 H 0.11 3.28 5.35 -2.50 -0.01 3.27 16 35 H 0.43 12.72 8.31 -92.70 -0.77 11.95 16 36 H 0.19 4.66 6.22 -2.91 -0.02 4.64 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.70 8.03 -2.39 -0.02 0.68 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.06 0.72 8.04 -2.39 -0.02 0.70 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -64.11 369.02 5.63 -58.48 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.25 Total: 21.48 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.08 Total: 23.70 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.40 Total: -109.18 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: 0.67 Total: -38.86 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.11 5.63 -58.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132348737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.311 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds