Wall clock time and date at job start Tue Mar 31 2020 13:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47119 * 2 1 4 4 C 1.34830 * 117.00143 * 179.97438 * 3 2 1 5 5 O 1.21595 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.46751 * 120.00410 * 180.02562 * 4 3 2 7 7 C 1.41464 * 126.51070 * 0.02562 * 6 4 3 8 8 N 1.30309 * 108.17063 * 179.97438 * 7 6 4 9 9 N 1.39893 * 109.20891 * 359.77148 * 8 7 6 10 10 C 1.46496 * 125.74725 * 180.27572 * 9 8 7 11 11 C 1.50693 * 109.47429 * 272.42482 * 10 9 8 12 12 H 1.08004 * 119.99838 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00633 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00379 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99701 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47432 * 89.99987 * 15 13 11 17 17 H 1.48497 * 109.47134 * 210.00160 * 15 13 11 18 18 H 1.48510 * 109.46917 * 330.00109 * 15 13 11 19 19 C 1.34768 * 108.51129 * 0.38853 * 9 8 7 20 20 N 1.38491 * 126.43473 * 179.88249 * 19 9 8 21 21 C 1.34775 * 119.99862 * 289.87492 * 20 19 9 22 22 O 1.21271 * 119.99926 * 355.70290 * 21 20 19 23 23 C 1.50694 * 119.99756 * 175.70709 * 21 20 19 24 24 H 1.08999 * 109.47821 * 59.99820 * 23 21 20 25 25 C 1.53009 * 109.46941 * 299.99576 * 23 21 20 26 26 C 1.52998 * 109.47153 * 180.02562 * 23 21 20 27 27 C 1.53006 * 109.47408 * 184.99798 * 26 23 21 28 28 H 1.09006 * 109.46998 * 299.99628 * 1 2 3 29 29 H 1.09004 * 109.47139 * 59.99733 * 1 2 3 30 30 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46998 * 240.00372 * 2 1 3 32 32 H 1.09004 * 109.47139 * 120.00267 * 2 1 3 33 33 H 1.08005 * 125.91852 * 359.97438 * 7 6 4 34 34 H 1.09004 * 109.46925 * 32.42523 * 10 9 8 35 35 H 1.09005 * 109.47265 * 152.41927 * 10 9 8 36 36 H 0.96997 * 119.99574 * 180.02562 * 14 13 11 37 37 H 0.97003 * 119.99813 * 109.87590 * 20 19 9 38 38 H 1.08992 * 109.47160 * 300.00018 * 25 23 21 39 39 H 1.08997 * 109.46796 * 60.00650 * 25 23 21 40 40 H 1.09004 * 109.47028 * 180.02562 * 25 23 21 41 41 H 1.09007 * 109.46601 * 304.99473 * 26 23 21 42 42 H 1.08992 * 109.47493 * 64.99687 * 26 23 21 43 43 H 1.08998 * 109.46644 * 299.99926 * 27 26 23 44 44 H 1.09001 * 109.46709 * 59.99349 * 27 26 23 45 45 H 1.08990 * 109.47222 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3506 1.5456 0.0005 5 8 4.0913 0.5813 0.0005 6 6 3.9116 2.9017 0.0011 7 6 3.1827 4.1141 0.0017 8 7 4.0344 5.1003 0.0027 9 7 5.3350 4.5852 0.0081 10 6 6.5685 5.3755 0.0164 11 6 6.9664 5.7008 -1.4002 12 1 6.3607 5.3539 -2.2244 13 6 8.1029 6.4421 -1.6442 14 7 8.4498 6.7264 -2.8806 15 14 9.1494 7.0440 -0.2187 16 1 10.1822 6.0262 0.1016 17 1 9.8109 8.3194 -0.5941 18 1 8.2868 7.2648 0.9699 19 6 5.2623 3.2395 0.0017 20 7 6.3305 2.3581 0.0018 21 6 7.1070 2.2402 -1.0935 22 8 6.8249 2.8470 -2.1049 23 6 8.3256 1.3543 -1.0613 24 1 8.0248 0.3302 -0.8404 25 6 9.2869 1.8484 0.0218 26 6 9.0246 1.3989 -2.4216 27 6 10.1885 0.4058 -2.4298 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 2.1066 4.2064 0.0014 34 1 6.4036 6.3005 0.5690 35 1 7.3634 4.8033 0.4948 36 1 9.2497 7.2476 -3.0521 37 1 6.5198 1.8256 0.7902 38 1 9.5878 2.8724 -0.1992 39 1 8.7892 1.8169 0.9910 40 1 10.1686 1.2079 0.0448 41 1 8.3140 1.1323 -3.2040 42 1 9.4039 2.4046 -2.6025 43 1 10.8990 0.6723 -1.6473 44 1 9.8092 -0.6000 -2.2488 45 1 10.6861 0.4372 -3.3989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136856501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:31 Heat of formation + Delta-G solvation = -56.462796 kcal Electronic energy + Delta-G solvation = -28641.644775 eV Core-core repulsion = 24660.968771 eV Total energy + Delta-G solvation = -3980.676004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23466 -39.69764 -39.20529 -36.22311 -35.25767 -34.44904 -33.74908 -32.02083 -31.55447 -29.99741 -28.76418 -27.92400 -25.25524 -24.20392 -22.90010 -22.39521 -22.02382 -20.44381 -19.77581 -19.41812 -17.70025 -17.28183 -16.98999 -16.63947 -16.30267 -15.84098 -15.24607 -14.67368 -14.60371 -14.36825 -14.01530 -13.85824 -13.47437 -13.35785 -13.28091 -13.09552 -12.80416 -12.55037 -12.43126 -12.20839 -12.02635 -11.90179 -11.62971 -11.52018 -11.38418 -11.19481 -10.97321 -10.75655 -10.63633 -10.46658 -10.42199 -10.39017 -9.98277 -9.70128 -9.51017 -9.27357 -8.74724 -8.62842 -8.17314 -6.19871 -4.21852 1.66055 2.48571 2.66746 2.99043 3.10715 3.15287 3.18029 3.21451 3.51389 3.66480 4.21468 4.82137 4.88213 4.89263 4.93551 4.98197 5.10370 5.11101 5.21958 5.26031 5.45036 5.50750 5.54006 5.62551 5.64844 5.69093 5.69846 5.85277 5.89909 5.99175 6.03468 6.17126 6.20914 6.22890 6.37272 6.45701 6.55416 6.64640 6.65986 6.91260 7.23753 7.43106 7.63547 8.07084 8.20422 8.31268 8.61042 8.95755 9.32606 10.92635 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011507 B = 0.004876 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.674818 B = 5741.577810 C = 7482.730480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.552 3.448 5 O -0.528 6.528 6 C -0.309 4.309 7 C 0.091 3.909 8 N -0.276 5.276 9 N -0.302 5.302 10 C 0.224 3.776 11 C -0.526 4.526 12 H 0.092 0.908 13 C 0.083 3.917 14 N -0.879 5.879 15 Si 0.861 3.139 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.265 1.265 19 C 0.392 3.608 20 N -0.662 5.662 21 C 0.516 3.484 22 O -0.470 6.470 23 C -0.099 4.099 24 H 0.096 0.904 25 C -0.148 4.148 26 C -0.108 4.108 27 C -0.150 4.150 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.192 0.808 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.267 0.733 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -14.264 8.735 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.399 3.601 5 O -0.419 6.419 6 C -0.325 4.325 7 C -0.096 4.096 8 N -0.097 5.097 9 N -0.080 5.080 10 C 0.106 3.894 11 C -0.565 4.565 12 H 0.109 0.891 13 C -0.121 4.121 14 N -0.516 5.516 15 Si 0.687 3.313 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.190 1.190 19 C 0.162 3.838 20 N -0.317 5.317 21 C 0.302 3.698 22 O -0.338 6.338 23 C -0.121 4.121 24 H 0.114 0.886 25 C -0.206 4.206 26 C -0.146 4.146 27 C -0.207 4.207 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.209 0.791 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.766 -12.620 7.819 15.592 hybrid contribution 0.669 -0.838 1.025 1.484 sum -4.097 -13.458 8.844 16.616 Atomic orbital electron populations 1.21796 0.92931 1.02626 1.03521 1.22911 0.94990 0.80718 1.02304 1.86553 1.24239 1.31525 1.85046 1.19772 0.79938 0.88400 0.71966 1.90787 1.60277 1.42350 1.48475 1.18794 0.91250 0.91742 1.30700 1.23860 0.99935 0.88467 0.97355 1.77249 0.86591 1.22120 1.23745 1.49445 1.07371 1.03185 1.48016 1.20215 0.77001 0.91216 1.00988 1.21056 1.10846 1.34798 0.89761 0.89050 1.24721 0.96710 0.95280 0.95405 1.69870 1.25100 1.38040 1.18618 0.87102 0.81439 0.79456 0.83265 1.19768 1.20378 1.18996 1.17660 0.87319 0.82734 0.96105 1.42580 1.29341 1.41371 1.18420 1.20836 0.83814 0.82515 0.82657 1.90887 1.69917 1.42644 1.30303 1.21248 0.92965 0.99170 0.98693 0.88607 1.21867 0.99003 1.02752 0.96962 1.21367 0.97224 1.01132 0.94881 1.21823 0.98304 0.98835 1.01785 0.91534 0.91461 0.90559 0.91514 0.91557 0.79149 0.92568 0.94170 0.92289 0.74663 0.91366 0.92483 0.91236 0.91154 0.90399 0.92570 0.93008 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.72 6.20 37.16 0.23 0.95 16 3 O -0.36 -5.18 10.07 -40.85 -0.41 -5.59 16 4 C 0.55 9.52 7.94 34.17 0.27 9.79 16 5 O -0.53 -9.68 16.09 -19.34 -0.31 -9.99 16 6 C -0.31 -5.77 6.15 -104.86 -0.64 -6.41 16 7 C 0.09 1.61 11.86 -16.97 -0.20 1.41 16 8 N -0.28 -5.84 12.47 30.88 0.39 -5.46 16 9 N -0.30 -6.70 3.58 -61.13 -0.22 -6.92 16 10 C 0.22 5.31 5.07 -5.20 -0.03 5.28 16 11 C -0.53 -14.79 8.71 -34.44 -0.30 -15.09 16 12 H 0.09 3.01 7.63 -52.48 -0.40 2.61 16 13 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 14 N -0.88 -26.40 13.96 55.43 0.77 -25.63 16 15 Si 0.86 19.96 27.47 -169.99 -4.67 15.29 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 19 C 0.39 7.89 6.49 -153.42 -1.00 6.90 16 20 N -0.66 -11.68 4.29 -11.08 -0.05 -11.73 16 21 C 0.52 9.91 7.00 -10.99 -0.08 9.83 16 22 O -0.47 -11.54 14.19 5.56 0.08 -11.46 16 23 C -0.10 -1.44 2.72 -91.77 -0.25 -1.69 16 24 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 25 C -0.15 -1.88 8.85 37.16 0.33 -1.55 16 26 C -0.11 -1.65 4.75 -26.73 -0.13 -1.78 16 27 C -0.15 -1.73 9.67 37.16 0.36 -1.37 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.19 2.58 8.06 -52.48 -0.42 2.15 16 34 H 0.06 1.32 7.20 -51.93 -0.37 0.95 16 35 H 0.04 0.89 7.45 -51.93 -0.39 0.51 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.41 5.80 8.38 -40.82 -0.34 5.46 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 40 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 41 H 0.07 1.16 7.96 -51.92 -0.41 0.74 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -34.77 381.20 -6.63 -41.40 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.81 Total: 6.67 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.15 Total: 7.67 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.89 Total: -49.74 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.64 Total: -27.04 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.77 -6.63 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136856501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.061 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds