Wall clock time and date at job start Tue Mar 31 2020 13:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46829 * 2 1 4 4 C 1.34827 * 116.99932 * 179.97438 * 3 2 1 5 5 O 1.21594 * 119.99803 * 0.02562 * 4 3 2 6 6 C 1.46751 * 119.99994 * 179.97438 * 4 3 2 7 7 C 1.41468 * 126.51353 * 0.03170 * 6 4 3 8 8 N 1.30307 * 108.16968 * 179.72034 * 7 6 4 9 9 N 1.39902 * 109.20536 * 0.40455 * 8 7 6 10 10 C 1.46503 * 125.73843 * 179.84927 * 9 8 7 11 11 C 1.50697 * 109.47179 * 289.40998 * 10 9 8 12 12 H 1.08001 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00084 * 179.72636 * 11 10 9 14 14 N 1.31512 * 119.99997 * 0.27833 * 13 11 10 15 15 Si 1.86806 * 120.00409 * 180.27331 * 13 11 10 16 16 H 1.48501 * 109.46489 * 60.00069 * 15 13 11 17 17 H 1.48495 * 109.47299 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46928 * 300.00611 * 15 13 11 19 19 C 1.34761 * 108.51260 * 359.58897 * 9 8 7 20 20 N 1.38487 * 126.42967 * 180.22435 * 19 9 8 21 21 C 1.34776 * 119.99712 * 298.91102 * 20 19 9 22 22 O 1.21275 * 120.00281 * 4.45977 * 21 20 19 23 23 C 1.50700 * 120.00044 * 184.46501 * 21 20 19 24 24 H 1.09006 * 109.46999 * 299.99905 * 23 21 20 25 25 C 1.53006 * 109.47338 * 59.99356 * 23 21 20 26 26 C 1.52996 * 109.47465 * 180.02562 * 23 21 20 27 27 C 1.53003 * 109.47445 * 174.99921 * 26 23 21 28 28 H 1.09002 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46931 * 299.99855 * 1 2 3 30 30 H 1.08995 * 109.47368 * 60.00058 * 1 2 3 31 31 H 1.08998 * 109.46912 * 239.99908 * 2 1 3 32 32 H 1.09001 * 109.47064 * 119.99655 * 2 1 3 33 33 H 1.07995 * 125.91513 * 359.95159 * 7 6 4 34 34 H 1.09002 * 109.46858 * 169.41373 * 10 9 8 35 35 H 1.08993 * 109.47431 * 49.41440 * 10 9 8 36 36 H 0.97008 * 120.00485 * 179.97438 * 14 13 11 37 37 H 0.96997 * 120.00392 * 118.91466 * 20 19 9 38 38 H 1.09001 * 109.47030 * 179.97438 * 25 23 21 39 39 H 1.08996 * 109.46763 * 300.00512 * 25 23 21 40 40 H 1.09006 * 109.46628 * 60.00322 * 25 23 21 41 41 H 1.09008 * 109.46959 * 294.99759 * 26 23 21 42 42 H 1.08995 * 109.47407 * 54.99484 * 26 23 21 43 43 H 1.09003 * 109.46936 * 59.99546 * 27 26 23 44 44 H 1.08999 * 109.47029 * 179.97438 * 27 26 23 45 45 H 1.08998 * 109.46730 * 299.99354 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3506 1.5457 0.0005 5 8 4.0913 0.5814 0.0005 6 6 3.9115 2.9018 0.0000 7 6 3.1825 4.1142 -0.0004 8 7 4.0342 5.1004 0.0052 9 7 5.3349 4.5853 0.0002 10 6 6.5683 5.3758 0.0009 11 6 6.7336 6.0501 -1.3366 12 1 5.9937 5.9048 -2.1098 13 6 7.8263 6.8576 -1.5712 14 7 8.7271 7.0349 -0.6296 15 14 8.0273 7.6996 -3.2266 16 1 6.8641 8.5892 -3.4737 17 1 9.2751 8.5047 -3.2242 18 1 8.1025 6.6740 -4.2977 19 6 5.2622 3.2396 0.0003 20 7 6.3304 2.3583 0.0005 21 6 7.2094 2.3647 -1.0211 22 8 7.1120 3.1949 -1.8998 23 6 8.3132 1.3400 -1.0719 24 1 8.9396 1.4365 -0.1850 25 6 7.7049 -0.0633 -1.1162 26 6 9.1634 1.5676 -2.3233 27 6 10.3558 0.6090 -2.3112 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1065 4.2064 -0.0012 34 1 7.4197 4.7205 0.1851 35 1 6.5152 6.1313 0.7847 36 1 9.4961 7.6027 -0.7948 37 1 6.4460 1.7365 0.7359 38 1 8.5034 -0.8044 -1.1533 39 1 7.0996 -0.2251 -0.2243 40 1 7.0785 -0.1598 -2.0030 41 1 8.5588 1.3843 -3.2116 42 1 9.5242 2.5961 -2.3353 43 1 9.9950 -0.4195 -2.2992 44 1 10.9612 0.7709 -3.2030 45 1 10.9604 0.7923 -1.4230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136856539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:34 Heat of formation + Delta-G solvation = -62.083851 kcal Electronic energy + Delta-G solvation = -28491.294854 eV Core-core repulsion = 24510.375102 eV Total energy + Delta-G solvation = -3980.919751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19712 -39.70595 -39.21518 -36.21392 -35.32563 -34.44841 -33.70040 -31.94288 -31.42766 -30.00100 -28.72552 -27.37386 -25.27593 -24.18834 -23.10677 -22.46642 -22.02818 -20.44652 -19.81742 -19.39751 -17.63516 -17.11663 -16.81549 -16.44298 -16.29910 -15.83219 -15.26755 -14.88827 -14.58372 -14.23774 -13.87791 -13.73944 -13.57571 -13.45843 -13.25933 -13.08294 -12.80353 -12.51403 -12.22649 -12.05740 -11.88937 -11.74201 -11.61027 -11.55675 -11.44664 -11.02047 -10.88236 -10.72043 -10.69791 -10.52129 -10.42082 -10.25182 -9.96935 -9.79145 -9.61508 -9.36643 -8.57444 -8.45549 -8.08248 -6.17520 -4.18685 1.72144 2.57317 2.73909 2.98460 3.08665 3.33100 3.34058 3.40736 3.55687 3.73538 4.40266 4.79700 4.87784 4.88981 4.91481 5.03573 5.05736 5.20002 5.21627 5.31468 5.39890 5.46991 5.55885 5.58161 5.66692 5.69353 5.70626 5.85726 5.87708 5.97694 6.04378 6.07666 6.20673 6.36702 6.39374 6.54444 6.66934 6.75557 6.87869 7.09061 7.49683 7.65920 7.84140 7.89687 8.14215 8.29093 8.54773 8.82959 9.44326 10.92246 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004869 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.853383 B = 5749.258566 C = 7833.303974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.552 3.448 5 O -0.532 6.532 6 C -0.318 4.318 7 C 0.087 3.913 8 N -0.274 5.274 9 N -0.299 5.299 10 C 0.258 3.742 11 C -0.503 4.503 12 H 0.066 0.934 13 C 0.065 3.935 14 N -0.900 5.900 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.383 3.617 20 N -0.656 5.656 21 C 0.508 3.492 22 O -0.470 6.470 23 C -0.101 4.101 24 H 0.097 0.903 25 C -0.142 4.142 26 C -0.108 4.108 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.190 0.810 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.266 0.734 37 H 0.417 0.583 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 -16.191 3.006 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.400 3.600 5 O -0.423 6.423 6 C -0.334 4.334 7 C -0.100 4.100 8 N -0.095 5.095 9 N -0.078 5.078 10 C 0.141 3.859 11 C -0.542 4.542 12 H 0.084 0.916 13 C -0.137 4.137 14 N -0.540 5.540 15 Si 0.734 3.266 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.152 3.848 20 N -0.311 5.311 21 C 0.294 3.706 22 O -0.338 6.338 23 C -0.123 4.123 24 H 0.115 0.885 25 C -0.200 4.200 26 C -0.146 4.146 27 C -0.208 4.208 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.206 0.794 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.744 -14.402 2.352 15.682 hybrid contribution 0.191 -0.815 -0.427 0.940 sum -5.553 -15.217 1.925 16.313 Atomic orbital electron populations 1.21796 0.92985 1.02597 1.03516 1.22899 0.94960 0.80781 1.02254 1.86559 1.24317 1.31435 1.85058 1.19795 0.79896 0.88423 0.71900 1.90771 1.60254 1.42381 1.48856 1.18726 0.91003 0.91719 1.31962 1.23851 0.99914 0.88506 0.97758 1.77284 0.86805 1.22045 1.23338 1.49870 1.07937 1.02922 1.47083 1.19879 0.75221 0.90681 1.00131 1.20973 1.08241 1.27691 0.97251 0.91610 1.24831 0.95121 0.96223 0.97563 1.69901 1.11951 1.38947 1.33171 0.86395 0.77340 0.79281 0.83571 1.20045 1.21185 1.19926 1.17790 0.87220 0.83141 0.96687 1.42626 1.25774 1.37037 1.25625 1.20978 0.82455 0.85669 0.81541 1.90961 1.70974 1.35703 1.36194 1.21276 0.95093 0.94320 1.01596 0.88489 1.21808 1.00870 0.94227 1.03075 1.21368 0.95995 1.00992 0.96240 1.21822 0.97895 0.99281 1.01776 0.90588 0.91523 0.91501 0.91579 0.91559 0.79366 0.93086 0.92987 0.92469 0.74393 0.91488 0.91740 0.92132 0.91380 0.90441 0.92660 0.92604 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.07 0.71 6.20 37.16 0.23 0.94 16 3 O -0.36 -5.11 10.07 -40.84 -0.41 -5.52 16 4 C 0.55 9.32 7.94 34.17 0.27 9.59 16 5 O -0.53 -9.33 16.09 -19.34 -0.31 -9.64 16 6 C -0.32 -5.92 6.15 -104.86 -0.64 -6.57 16 7 C 0.09 1.57 11.86 -16.97 -0.20 1.37 16 8 N -0.27 -5.99 12.47 30.88 0.39 -5.60 16 9 N -0.30 -6.90 3.53 -61.13 -0.22 -7.11 16 10 C 0.26 6.66 5.29 -5.19 -0.03 6.63 16 11 C -0.50 -14.34 8.21 -34.44 -0.28 -14.62 16 12 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 13 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 14 N -0.90 -25.91 13.29 55.43 0.74 -25.18 16 15 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.38 7.79 6.64 -153.43 -1.02 6.77 16 20 N -0.66 -11.56 4.25 -11.08 -0.05 -11.61 16 21 C 0.51 9.50 6.22 -10.99 -0.07 9.43 16 22 O -0.47 -11.17 13.64 5.56 0.08 -11.10 16 23 C -0.10 -1.41 2.72 -91.77 -0.25 -1.66 16 24 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 25 C -0.14 -1.65 8.85 37.16 0.33 -1.32 16 26 C -0.11 -1.55 4.75 -26.73 -0.13 -1.68 16 27 C -0.15 -1.64 9.67 37.16 0.36 -1.28 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 34 H 0.05 1.34 6.91 -51.93 -0.36 0.99 16 35 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.42 5.97 8.38 -40.82 -0.34 5.63 16 38 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 39 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 42 H 0.08 1.32 7.95 -51.93 -0.41 0.91 16 43 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -33.54 382.22 -7.01 -40.55 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.81 Total: 3.58 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.15 Total: 8.52 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.86 Total: -49.50 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.65 Total: -26.26 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.54 -7.01 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136856539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.538 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds