Wall clock time and date at job start Tue Mar 31 2020 13:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46829 * 2 1 4 4 C 1.34827 * 116.99932 * 179.97438 * 3 2 1 5 5 O 1.21594 * 119.99803 * 0.02562 * 4 3 2 6 6 C 1.46751 * 119.99994 * 179.97438 * 4 3 2 7 7 C 1.41468 * 126.51353 * 0.03170 * 6 4 3 8 8 N 1.30307 * 108.16968 * 179.72034 * 7 6 4 9 9 N 1.39902 * 109.20536 * 0.40455 * 8 7 6 10 10 C 1.46503 * 125.73843 * 179.84927 * 9 8 7 11 11 C 1.50697 * 109.47179 * 289.40998 * 10 9 8 12 12 H 1.08001 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00084 * 179.72636 * 11 10 9 14 14 N 1.31512 * 119.99997 * 0.27833 * 13 11 10 15 15 Si 1.86806 * 120.00409 * 180.27331 * 13 11 10 16 16 H 1.48501 * 109.46489 * 60.00069 * 15 13 11 17 17 H 1.48495 * 109.47299 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46928 * 300.00611 * 15 13 11 19 19 C 1.34761 * 108.51260 * 359.58897 * 9 8 7 20 20 N 1.38487 * 126.42967 * 180.22435 * 19 9 8 21 21 C 1.34776 * 119.99712 * 298.91102 * 20 19 9 22 22 O 1.21275 * 120.00281 * 4.45977 * 21 20 19 23 23 C 1.50700 * 120.00044 * 184.46501 * 21 20 19 24 24 H 1.09006 * 109.46999 * 299.99905 * 23 21 20 25 25 C 1.53006 * 109.47338 * 59.99356 * 23 21 20 26 26 C 1.52996 * 109.47465 * 180.02562 * 23 21 20 27 27 C 1.53003 * 109.47445 * 174.99921 * 26 23 21 28 28 H 1.09002 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46931 * 299.99855 * 1 2 3 30 30 H 1.08995 * 109.47368 * 60.00058 * 1 2 3 31 31 H 1.08998 * 109.46912 * 239.99908 * 2 1 3 32 32 H 1.09001 * 109.47064 * 119.99655 * 2 1 3 33 33 H 1.07995 * 125.91513 * 359.95159 * 7 6 4 34 34 H 1.09002 * 109.46858 * 169.41373 * 10 9 8 35 35 H 1.08993 * 109.47431 * 49.41440 * 10 9 8 36 36 H 0.97008 * 120.00485 * 179.97438 * 14 13 11 37 37 H 0.96997 * 120.00392 * 118.91466 * 20 19 9 38 38 H 1.09001 * 109.47030 * 179.97438 * 25 23 21 39 39 H 1.08996 * 109.46763 * 300.00512 * 25 23 21 40 40 H 1.09006 * 109.46628 * 60.00322 * 25 23 21 41 41 H 1.09008 * 109.46959 * 294.99759 * 26 23 21 42 42 H 1.08995 * 109.47407 * 54.99484 * 26 23 21 43 43 H 1.09003 * 109.46936 * 59.99546 * 27 26 23 44 44 H 1.08999 * 109.47029 * 179.97438 * 27 26 23 45 45 H 1.08998 * 109.46730 * 299.99354 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3506 1.5457 0.0005 5 8 4.0913 0.5814 0.0005 6 6 3.9115 2.9018 0.0000 7 6 3.1825 4.1142 -0.0004 8 7 4.0342 5.1004 0.0052 9 7 5.3349 4.5853 0.0002 10 6 6.5683 5.3758 0.0009 11 6 6.7336 6.0501 -1.3366 12 1 5.9937 5.9048 -2.1098 13 6 7.8263 6.8576 -1.5712 14 7 8.7271 7.0349 -0.6296 15 14 8.0273 7.6996 -3.2266 16 1 6.8641 8.5892 -3.4737 17 1 9.2751 8.5047 -3.2242 18 1 8.1025 6.6740 -4.2977 19 6 5.2622 3.2396 0.0003 20 7 6.3304 2.3583 0.0005 21 6 7.2094 2.3647 -1.0211 22 8 7.1120 3.1949 -1.8998 23 6 8.3132 1.3400 -1.0719 24 1 8.9396 1.4365 -0.1850 25 6 7.7049 -0.0633 -1.1162 26 6 9.1634 1.5676 -2.3233 27 6 10.3558 0.6090 -2.3112 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1065 4.2064 -0.0012 34 1 7.4197 4.7205 0.1851 35 1 6.5152 6.1313 0.7847 36 1 9.4961 7.6027 -0.7948 37 1 6.4460 1.7365 0.7359 38 1 8.5034 -0.8044 -1.1533 39 1 7.0996 -0.2251 -0.2243 40 1 7.0785 -0.1598 -2.0030 41 1 8.5588 1.3843 -3.2116 42 1 9.5242 2.5961 -2.3353 43 1 9.9950 -0.4195 -2.2992 44 1 10.9612 0.7709 -3.2030 45 1 10.9604 0.7923 -1.4230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136856539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:33 Heat of formation + Delta-G solvation = -82.816463 kcal Electronic energy + Delta-G solvation = -28492.193887 eV Core-core repulsion = 24510.375102 eV Total energy + Delta-G solvation = -3981.818785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74742 -41.00747 -40.67496 -37.44749 -36.51935 -36.01416 -35.70902 -33.61789 -32.49982 -31.21414 -30.03860 -29.28990 -26.43794 -25.72251 -24.63442 -23.70633 -23.27607 -21.85542 -21.15756 -20.90017 -19.13730 -18.83715 -18.29224 -18.12921 -17.41921 -17.20478 -16.74780 -16.61342 -16.04390 -15.72164 -15.34047 -15.14876 -14.88644 -14.69404 -14.44178 -14.38003 -14.18148 -13.80699 -13.55105 -13.49814 -13.05725 -12.98668 -12.80531 -12.78431 -12.59919 -12.55016 -12.47221 -12.33794 -12.23319 -11.87687 -11.76255 -11.61657 -11.40667 -11.37297 -11.22062 -10.87728 -10.73051 -10.20062 -9.66353 -8.34859 -6.42835 0.20908 1.07101 1.24449 1.31448 1.34976 1.43183 1.53401 1.82486 2.08455 2.24444 2.35152 2.98434 3.53818 3.66168 3.81063 3.90647 3.96118 4.11539 4.16893 4.19000 4.33621 4.41917 4.47755 4.51967 4.58531 4.68548 4.74270 4.83048 4.93886 4.96409 4.99245 5.01756 5.02629 5.10919 5.21861 5.22608 5.36007 5.47736 5.49354 5.53477 5.54210 5.77583 5.93070 6.20991 6.56069 6.67870 6.88602 7.09797 7.23128 8.74434 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004869 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.853383 B = 5749.258566 C = 7833.303974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.558 3.442 5 O -0.539 6.539 6 C -0.319 4.319 7 C 0.105 3.895 8 N -0.313 5.313 9 N -0.327 5.327 10 C 0.280 3.720 11 C -0.514 4.514 12 H 0.040 0.960 13 C 0.022 3.978 14 N -0.922 5.922 15 Si 0.962 3.038 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.281 1.281 19 C 0.371 3.629 20 N -0.646 5.646 21 C 0.502 3.498 22 O -0.530 6.530 23 C -0.094 4.094 24 H 0.122 0.878 25 C -0.133 4.133 26 C -0.107 4.107 27 C -0.142 4.142 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.271 0.729 37 H 0.433 0.567 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -18.531 3.226 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 O -0.271 6.271 4 C 0.405 3.595 5 O -0.431 6.431 6 C -0.334 4.334 7 C -0.081 4.081 8 N -0.134 5.134 9 N -0.106 5.106 10 C 0.161 3.839 11 C -0.552 4.552 12 H 0.058 0.942 13 C -0.178 4.178 14 N -0.561 5.561 15 Si 0.787 3.213 16 H -0.194 1.194 17 H -0.193 1.193 18 H -0.207 1.207 19 C 0.141 3.859 20 N -0.302 5.302 21 C 0.290 3.710 22 O -0.402 6.402 23 C -0.115 4.115 24 H 0.139 0.861 25 C -0.190 4.190 26 C -0.145 4.145 27 C -0.199 4.199 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.248 0.752 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.275 0.725 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.569 -16.786 2.614 18.214 hybrid contribution 0.290 -0.218 -0.467 0.592 sum -6.279 -17.004 2.146 18.253 Atomic orbital electron populations 1.21824 0.90382 1.04334 1.03692 1.23291 0.96937 0.78910 1.02578 1.86545 1.22376 1.33817 1.84368 1.19468 0.80887 0.87376 0.71779 1.90759 1.60828 1.42365 1.49122 1.18992 0.90363 0.93137 1.30946 1.24554 1.01298 0.87381 0.94905 1.77221 0.86782 1.23889 1.25498 1.49530 1.07597 1.03739 1.49718 1.19262 0.76484 0.90007 0.98126 1.20994 1.07991 1.28462 0.97794 0.94150 1.25557 0.94770 0.96700 1.00751 1.69965 1.12252 1.39369 1.34555 0.85544 0.78069 0.78263 0.79420 1.19443 1.19330 1.20655 1.18251 0.88801 0.82620 0.96203 1.42704 1.25019 1.36484 1.25949 1.21995 0.82858 0.85627 0.80523 1.90931 1.72540 1.38274 1.38436 1.21387 0.93576 0.94186 1.02324 0.86066 1.21784 1.01672 0.92906 1.02657 1.21335 0.97292 0.99896 0.95983 1.21778 0.96310 0.99314 1.02510 0.88050 0.91098 0.91562 0.91680 0.90885 0.75153 0.94234 0.95136 0.92028 0.72543 0.88226 0.91073 0.93626 0.92869 0.94215 0.90363 0.92287 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.29 71.98 0.74 -1.08 16 2 C 0.06 1.08 6.20 71.98 0.45 1.53 16 3 O -0.35 -9.34 10.07 -57.40 -0.58 -9.92 16 4 C 0.56 17.96 7.94 70.05 0.56 18.52 16 5 O -0.54 -18.04 16.09 19.53 0.31 -17.72 16 6 C -0.32 -11.69 6.15 -20.02 -0.12 -11.82 16 7 C 0.11 3.73 11.86 85.71 1.02 4.75 16 8 N -0.31 -13.99 12.47 -56.23 -0.70 -14.70 16 9 N -0.33 -15.66 3.53 -347.31 -1.23 -16.89 16 10 C 0.28 15.23 5.29 85.63 0.45 15.69 16 11 C -0.51 -30.68 8.21 25.60 0.21 -30.47 16 12 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 13 C 0.02 1.28 5.46 84.65 0.46 1.74 16 14 N -0.92 -54.35 13.29 21.45 0.28 -54.06 16 15 Si 0.96 46.90 29.54 68.60 2.03 48.92 16 16 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 19 C 0.37 15.39 6.64 132.54 0.88 16.27 16 20 N -0.65 -23.03 4.25 -307.36 -1.30 -24.33 16 21 C 0.50 19.26 6.22 87.66 0.55 19.81 16 22 O -0.53 -26.51 13.64 -3.01 -0.04 -26.55 16 23 C -0.09 -2.54 2.72 -11.54 -0.03 -2.57 16 24 H 0.12 2.72 8.14 -2.38 -0.02 2.71 16 25 C -0.13 -2.77 8.85 71.98 0.64 -2.14 16 26 C -0.11 -3.09 4.75 30.59 0.15 -2.95 16 27 C -0.14 -2.82 9.67 71.98 0.70 -2.12 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.23 5.83 8.06 -2.91 -0.02 5.80 16 34 H 0.04 2.21 6.91 -2.39 -0.02 2.19 16 35 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 37 H 0.43 12.16 8.38 -92.71 -0.78 11.38 16 38 H 0.10 1.46 6.56 -2.39 -0.02 1.45 16 39 H 0.07 1.41 7.67 -2.39 -0.02 1.39 16 40 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.04 1.43 7.95 -2.39 -0.02 1.41 16 43 H 0.08 1.21 6.57 -2.39 -0.02 1.19 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -76.55 382.22 5.64 -70.91 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.23 Total: 19.19 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 6.63 Total: 25.16 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -2.95 Total: -109.98 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -0.30 Total: -54.19 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -76.55 5.64 -70.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136856539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.908 kcal (2) G-P(sol) polarization free energy of solvation -76.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds