Wall clock time and date at job start Tue Mar 31 2020 14:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47220 * 2 1 4 4 O 1.42898 * 109.47010 * 240.00008 * 2 1 3 5 5 C 1.42898 * 113.99937 * 90.00123 * 4 2 1 6 6 C 1.53004 * 109.46808 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.48372 * 304.97433 * 6 5 4 8 8 C 1.53099 * 109.47974 * 184.94033 * 6 5 4 9 9 C 1.53175 * 109.16345 * 182.41041 * 8 6 5 10 10 C 1.53173 * 109.03819 * 56.98272 * 9 8 6 11 11 C 1.53094 * 109.16177 * 303.02054 * 10 9 8 12 12 O 1.42900 * 109.41827 * 57.60527 * 11 10 9 13 13 C 1.50696 * 109.46807 * 120.00207 * 2 1 3 14 14 O 1.21299 * 120.00443 * 115.00521 * 13 2 1 15 15 N 1.34783 * 119.99945 * 294.99730 * 13 2 1 16 16 C 1.40590 * 120.00010 * 180.02562 * 15 13 2 17 17 C 1.40656 * 126.08445 * 359.97438 * 16 15 13 18 18 N 1.30904 * 108.38793 * 179.97438 * 17 16 15 19 19 N 1.40065 * 108.40957 * 359.97438 * 18 17 16 20 20 C 1.37325 * 126.07140 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99654 * 180.02562 * 20 19 18 22 22 C 1.38981 * 119.99678 * 0.02807 * 20 19 18 23 23 N 1.31291 * 120.00546 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99673 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47414 * 59.99835 * 24 22 20 26 26 H 1.48500 * 109.47052 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47103 * 299.99486 * 24 22 20 28 28 C 1.35686 * 126.08374 * 180.28539 * 16 15 13 29 29 H 1.08999 * 109.47460 * 300.00156 * 1 2 3 30 30 H 1.09000 * 109.47285 * 60.00313 * 1 2 3 31 31 H 1.08997 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47359 * 299.99240 * 5 4 2 33 33 H 1.08999 * 109.47276 * 60.00291 * 5 4 2 34 34 H 1.08998 * 109.52001 * 302.31754 * 8 6 5 35 35 H 1.09004 * 109.52097 * 62.50229 * 8 6 5 36 36 H 1.08998 * 109.54123 * 297.11332 * 9 8 6 37 37 H 1.09002 * 109.53991 * 176.85173 * 9 8 6 38 38 H 1.08996 * 109.52539 * 183.11660 * 10 9 8 39 39 H 1.09002 * 109.57658 * 62.95619 * 10 9 8 40 40 H 1.09000 * 109.47918 * 297.61976 * 11 10 9 41 41 H 1.09008 * 109.47955 * 177.59169 * 11 10 9 42 42 H 0.97000 * 119.99979 * 0.02562 * 15 13 2 43 43 H 1.08001 * 125.80230 * 0.02562 * 17 16 15 44 44 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 45 45 H 1.07998 * 126.24303 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7091 -0.6407 -3.4788 7 1 3.6083 -1.1823 -3.1854 8 6 3.0338 0.2931 -4.6478 9 6 3.4851 -0.5432 -5.8490 10 6 2.3852 -1.5505 -6.1980 11 6 2.0855 -2.4131 -4.9692 12 8 1.7017 -1.5714 -3.8800 13 6 2.0323 -0.7104 1.2304 14 8 2.6531 -1.7468 1.1215 15 7 1.7918 -0.1942 2.4520 16 6 2.2608 -0.8567 3.5999 17 6 2.9899 -2.0594 3.6226 18 7 3.2479 -2.3624 4.8696 19 7 2.6968 -1.3693 5.6893 20 6 2.7543 -1.3290 7.0608 21 1 2.2927 -0.5129 7.5968 22 6 3.4064 -2.3385 7.7588 23 7 3.9671 -3.3308 7.1072 24 14 3.4851 -2.2833 9.6244 25 1 2.1075 -2.2961 10.1786 26 1 4.2310 -3.4665 10.1235 27 1 4.1801 -1.0433 10.0540 28 6 2.0857 -0.4528 4.8834 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.2538 0.6546 -2.5589 33 1 2.9320 0.9513 -2.0450 34 1 2.1450 0.8647 -4.9151 35 1 3.8331 0.9753 -4.3579 36 1 4.4019 -1.0767 -5.5981 37 1 3.6643 0.1111 -6.7022 38 1 2.7206 -2.1871 -7.0167 39 1 1.4830 -1.0171 -6.4974 40 1 2.9766 -2.9780 -4.6955 41 1 1.2736 -3.1034 -5.1988 42 1 1.2952 0.6344 2.5392 43 1 3.2870 -2.6344 2.7580 44 1 4.4225 -4.0351 7.5944 45 1 1.5621 0.4343 5.2078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139317025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:49 Heat of formation + Delta-G solvation = -50.720013 kcal Electronic energy + Delta-G solvation = -26872.158153 eV Core-core repulsion = 22891.731174 eV Total energy + Delta-G solvation = -3980.426978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.03674 -39.67035 -38.84461 -37.23078 -34.15440 -33.88506 -33.22317 -32.60235 -30.99730 -30.12669 -27.65534 -27.22581 -25.12297 -24.47759 -23.69799 -22.36921 -20.99463 -20.61130 -20.12279 -19.33102 -17.55229 -16.99953 -16.74748 -16.64465 -16.09157 -15.42220 -15.30605 -14.98501 -14.86206 -14.71433 -14.38306 -14.11364 -13.82830 -13.53329 -13.10196 -12.98175 -12.86402 -12.75495 -12.70150 -12.29904 -11.94686 -11.66221 -11.62634 -11.49283 -11.38716 -11.25797 -11.20466 -10.93414 -10.87992 -10.55761 -10.53501 -10.09869 -9.80751 -9.64926 -9.12082 -8.93431 -8.74303 -8.01434 -6.65509 -6.51862 -4.18991 2.87708 3.04571 3.07392 3.10404 3.12513 3.54051 3.71477 3.82827 4.02226 4.44912 4.46464 4.50449 4.56300 4.72910 4.74099 4.84050 4.89903 4.97577 5.05543 5.11101 5.12133 5.20171 5.22625 5.28988 5.39540 5.45341 5.50486 5.56462 5.60774 5.67574 5.71402 5.77355 5.95116 6.10809 6.27865 6.49548 6.90846 6.98643 7.03413 7.10428 7.22143 7.29800 7.89899 8.23835 8.32651 8.68528 8.92465 9.42173 9.71650 10.44137 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034197 B = 0.002044 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.600279 B =13695.104402 C =14094.280268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 H 0.081 0.919 4 O -0.345 6.345 5 C 0.067 3.933 6 C 0.093 3.907 7 H 0.069 0.931 8 C -0.148 4.148 9 C -0.122 4.122 10 C -0.157 4.157 11 C 0.059 3.941 12 O -0.368 6.368 13 C 0.499 3.501 14 O -0.514 6.514 15 N -0.624 5.624 16 C -0.058 4.058 17 C -0.034 4.034 18 N -0.260 5.260 19 N -0.143 5.143 20 C -0.324 4.324 21 H 0.115 0.885 22 C 0.046 3.954 23 N -0.770 5.770 24 Si 0.935 3.065 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.084 4.084 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.396 0.604 43 H 0.176 0.824 44 H 0.275 0.725 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 9.957 -21.275 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 H 0.098 0.902 4 O -0.263 6.263 5 C -0.010 4.010 6 C 0.035 3.965 7 H 0.087 0.913 8 C -0.186 4.186 9 C -0.159 4.159 10 C -0.195 4.195 11 C -0.018 4.018 12 O -0.287 6.287 13 C 0.283 3.717 14 O -0.389 6.389 15 N -0.268 5.268 16 C -0.163 4.163 17 C -0.209 4.209 18 N -0.091 5.091 19 N 0.089 4.911 20 C -0.456 4.456 21 H 0.133 0.867 22 C -0.171 4.171 23 N -0.397 5.397 24 Si 0.758 3.242 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.235 4.235 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.228 0.772 43 H 0.193 0.807 44 H 0.086 0.914 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.600 7.921 -20.459 22.232 hybrid contribution -0.476 1.476 0.107 1.554 sum -4.075 9.397 -20.352 22.784 Atomic orbital electron populations 1.22217 0.93796 1.04028 1.02577 1.21830 0.94934 0.95862 0.85913 0.90162 1.88127 1.86481 1.33324 1.18359 1.22589 1.00178 0.92456 0.85732 1.22053 0.92036 0.90393 0.92013 0.91273 1.22142 1.02330 0.98562 0.95581 1.21566 0.98475 0.97981 0.97882 1.22216 0.99614 0.98899 0.98793 1.22571 1.00935 0.92290 0.85968 1.88015 1.39860 1.49995 1.50796 1.20077 0.81655 0.86299 0.83643 1.90615 1.39502 1.23044 1.85701 1.42410 1.54859 1.25624 1.03924 1.17256 1.14430 1.00015 0.84589 1.24126 1.03600 0.96768 0.96422 1.78253 1.21412 1.10770 0.98692 1.44538 1.29082 1.12342 1.05150 1.19805 1.37806 1.10900 0.77072 0.86704 1.25637 0.95373 0.94867 1.01265 1.70207 1.25311 1.07710 1.36461 0.85902 0.79085 0.78538 0.80637 1.19183 1.20162 1.19201 1.21239 1.12263 1.00652 0.89349 0.91049 0.91583 0.90898 0.92421 0.91800 0.90832 0.90565 0.91583 0.91329 0.90929 0.91104 0.93068 0.88847 0.77154 0.80748 0.91430 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.48 37.16 0.35 -1.51 16 2 C 0.08 1.03 3.13 -27.88 -0.09 0.94 16 3 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 4 O -0.35 -5.26 9.49 -59.69 -0.57 -5.83 16 5 C 0.07 0.73 5.41 37.16 0.20 0.93 16 6 C 0.09 0.99 2.93 -26.68 -0.08 0.91 16 7 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.15 -1.12 5.42 -26.59 -0.14 -1.26 16 9 C -0.12 -0.82 6.03 -26.55 -0.16 -0.98 16 10 C -0.16 -1.10 6.14 -26.59 -0.16 -1.27 16 11 C 0.06 0.54 6.84 37.21 0.25 0.80 16 12 O -0.37 -4.54 10.37 -40.07 -0.42 -4.96 16 13 C 0.50 9.27 7.15 -10.98 -0.08 9.19 16 14 O -0.51 -12.06 13.66 -14.32 -0.20 -12.26 16 15 N -0.62 -11.29 5.43 -10.00 -0.05 -11.35 16 16 C -0.06 -1.36 6.90 -83.84 -0.58 -1.93 16 17 C -0.03 -0.92 10.85 -17.03 -0.18 -1.10 16 18 N -0.26 -7.75 10.40 30.80 0.32 -7.43 16 19 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 20 C -0.32 -8.67 10.25 -14.82 -0.15 -8.82 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 22 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 23 N -0.77 -21.88 11.81 55.49 0.66 -21.23 16 24 Si 0.93 19.14 29.55 -169.99 -5.02 14.11 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 29 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 30 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 33 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.40 5.36 8.61 -40.82 -0.35 5.01 16 43 H 0.18 4.79 5.92 -52.49 -0.31 4.48 16 44 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -36.17 372.96 -7.72 -43.88 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.91 Total: 8.66 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.10 Total: -5.19 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.88 Total: -44.04 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -1.18 Total: -23.04 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.17 -7.72 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139317025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.837 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds