Wall clock time and date at job start Tue Mar 31 2020 14:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47220 * 2 1 4 4 O 1.42898 * 109.47010 * 240.00008 * 2 1 3 5 5 C 1.42898 * 113.99937 * 90.00123 * 4 2 1 6 6 C 1.53004 * 109.46808 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.48372 * 304.97433 * 6 5 4 8 8 C 1.53099 * 109.47974 * 184.94033 * 6 5 4 9 9 C 1.53175 * 109.16345 * 182.41041 * 8 6 5 10 10 C 1.53173 * 109.03819 * 56.98272 * 9 8 6 11 11 C 1.53094 * 109.16177 * 303.02054 * 10 9 8 12 12 O 1.42900 * 109.41827 * 57.60527 * 11 10 9 13 13 C 1.50696 * 109.46807 * 120.00207 * 2 1 3 14 14 O 1.21299 * 120.00443 * 115.00521 * 13 2 1 15 15 N 1.34783 * 119.99945 * 294.99730 * 13 2 1 16 16 C 1.40590 * 120.00010 * 180.02562 * 15 13 2 17 17 C 1.40656 * 126.08445 * 359.97438 * 16 15 13 18 18 N 1.30904 * 108.38793 * 179.97438 * 17 16 15 19 19 N 1.40065 * 108.40957 * 359.97438 * 18 17 16 20 20 C 1.37325 * 126.07140 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99654 * 180.02562 * 20 19 18 22 22 C 1.38981 * 119.99678 * 0.02807 * 20 19 18 23 23 N 1.31291 * 120.00546 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99673 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47414 * 59.99835 * 24 22 20 26 26 H 1.48500 * 109.47052 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47103 * 299.99486 * 24 22 20 28 28 C 1.35686 * 126.08374 * 180.28539 * 16 15 13 29 29 H 1.08999 * 109.47460 * 300.00156 * 1 2 3 30 30 H 1.09000 * 109.47285 * 60.00313 * 1 2 3 31 31 H 1.08997 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47359 * 299.99240 * 5 4 2 33 33 H 1.08999 * 109.47276 * 60.00291 * 5 4 2 34 34 H 1.08998 * 109.52001 * 302.31754 * 8 6 5 35 35 H 1.09004 * 109.52097 * 62.50229 * 8 6 5 36 36 H 1.08998 * 109.54123 * 297.11332 * 9 8 6 37 37 H 1.09002 * 109.53991 * 176.85173 * 9 8 6 38 38 H 1.08996 * 109.52539 * 183.11660 * 10 9 8 39 39 H 1.09002 * 109.57658 * 62.95619 * 10 9 8 40 40 H 1.09000 * 109.47918 * 297.61976 * 11 10 9 41 41 H 1.09008 * 109.47955 * 177.59169 * 11 10 9 42 42 H 0.97000 * 119.99979 * 0.02562 * 15 13 2 43 43 H 1.08001 * 125.80230 * 0.02562 * 17 16 15 44 44 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 45 45 H 1.07998 * 126.24303 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7091 -0.6407 -3.4788 7 1 3.6083 -1.1823 -3.1854 8 6 3.0338 0.2931 -4.6478 9 6 3.4851 -0.5432 -5.8490 10 6 2.3852 -1.5505 -6.1980 11 6 2.0855 -2.4131 -4.9692 12 8 1.7017 -1.5714 -3.8800 13 6 2.0323 -0.7104 1.2304 14 8 2.6531 -1.7468 1.1215 15 7 1.7918 -0.1942 2.4520 16 6 2.2608 -0.8567 3.5999 17 6 2.9899 -2.0594 3.6226 18 7 3.2479 -2.3624 4.8696 19 7 2.6968 -1.3693 5.6893 20 6 2.7543 -1.3290 7.0608 21 1 2.2927 -0.5129 7.5968 22 6 3.4064 -2.3385 7.7588 23 7 3.9671 -3.3308 7.1072 24 14 3.4851 -2.2833 9.6244 25 1 2.1075 -2.2961 10.1786 26 1 4.2310 -3.4665 10.1235 27 1 4.1801 -1.0433 10.0540 28 6 2.0857 -0.4528 4.8834 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.2538 0.6546 -2.5589 33 1 2.9320 0.9513 -2.0450 34 1 2.1450 0.8647 -4.9151 35 1 3.8331 0.9753 -4.3579 36 1 4.4019 -1.0767 -5.5981 37 1 3.6643 0.1111 -6.7022 38 1 2.7206 -2.1871 -7.0167 39 1 1.4830 -1.0171 -6.4974 40 1 2.9766 -2.9780 -4.6955 41 1 1.2736 -3.1034 -5.1988 42 1 1.2952 0.6344 2.5392 43 1 3.2870 -2.6344 2.7580 44 1 4.4225 -4.0351 7.5944 45 1 1.5621 0.4343 5.2078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139317025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:48 Heat of formation + Delta-G solvation = -76.169219 kcal Electronic energy + Delta-G solvation = -26873.261713 eV Core-core repulsion = 22891.731174 eV Total energy + Delta-G solvation = -3981.530539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74612 -40.70059 -40.23296 -38.42445 -35.92030 -35.02840 -34.55124 -33.49649 -32.31940 -31.83212 -29.48196 -27.97699 -26.93383 -25.39657 -24.77667 -23.14751 -22.86159 -21.83814 -21.22169 -21.07035 -19.32365 -18.27387 -17.88275 -17.53360 -17.38997 -16.90361 -16.66434 -16.33114 -15.93784 -15.67911 -15.50041 -15.34715 -15.19301 -14.89052 -14.76994 -14.50067 -13.69471 -13.59871 -13.52714 -13.45568 -13.32285 -13.23528 -12.88625 -12.84838 -12.73463 -12.41723 -12.15713 -12.13621 -11.96220 -11.82673 -11.58843 -11.26688 -10.99706 -10.87071 -10.80756 -10.41148 -10.33961 -10.09788 -8.52589 -8.45919 -6.23712 1.22926 1.40016 1.53006 1.56908 1.85546 1.87477 2.17802 2.51213 2.76809 2.81567 3.01067 3.10090 3.75538 3.84998 3.91868 3.94149 3.98198 4.06277 4.08423 4.18717 4.31758 4.42121 4.45022 4.50476 4.60093 4.65225 4.67941 4.75078 4.84896 4.87351 4.93664 5.00757 5.05786 5.08799 5.11638 5.16514 5.23903 5.29997 5.37515 5.47068 5.96263 6.12638 6.31120 6.34431 6.73932 6.78312 7.41141 7.48539 7.68800 8.53414 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034197 B = 0.002044 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.600279 B =13695.104402 C =14094.280268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 H 0.124 0.876 4 O -0.386 6.386 5 C 0.061 3.939 6 C 0.086 3.914 7 H 0.046 0.954 8 C -0.141 4.141 9 C -0.124 4.124 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.397 6.397 13 C 0.492 3.508 14 O -0.571 6.571 15 N -0.610 5.610 16 C -0.043 4.043 17 C -0.064 4.064 18 N -0.311 5.311 19 N -0.168 5.168 20 C -0.354 4.354 21 H 0.143 0.857 22 C -0.009 4.009 23 N -0.827 5.827 24 Si 1.021 2.979 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.252 1.252 28 C -0.077 4.077 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.422 0.578 43 H 0.161 0.839 44 H 0.276 0.724 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 13.502 -21.615 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.142 0.858 4 O -0.304 6.304 5 C -0.015 4.015 6 C 0.028 3.972 7 H 0.064 0.936 8 C -0.178 4.178 9 C -0.161 4.161 10 C -0.189 4.189 11 C -0.026 4.026 12 O -0.316 6.316 13 C 0.280 3.720 14 O -0.449 6.449 15 N -0.257 5.257 16 C -0.150 4.150 17 C -0.239 4.239 18 N -0.143 5.143 19 N 0.063 4.937 20 C -0.485 4.485 21 H 0.161 0.839 22 C -0.221 4.221 23 N -0.455 5.455 24 Si 0.839 3.161 25 H -0.176 1.176 26 H -0.205 1.205 27 H -0.176 1.176 28 C -0.228 4.228 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.117 0.883 42 H 0.260 0.740 43 H 0.178 0.822 44 H 0.086 0.914 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.098 11.534 -20.842 24.359 hybrid contribution -0.050 0.389 0.055 0.396 sum -5.148 11.923 -20.787 24.510 Atomic orbital electron populations 1.22223 0.91636 1.03037 1.05120 1.21892 0.96240 0.96507 0.82919 0.85832 1.88095 1.86918 1.35709 1.19719 1.22879 1.01869 0.92393 0.84310 1.22199 0.90828 0.90709 0.93426 0.93629 1.22105 1.03221 0.98099 0.94402 1.21618 0.98075 0.98134 0.98294 1.22170 0.99946 0.98859 0.97908 1.22746 1.00822 0.92638 0.86414 1.87962 1.40845 1.50827 1.51996 1.21264 0.80067 0.85651 0.85047 1.90600 1.41899 1.25781 1.86605 1.42323 1.54744 1.26241 1.02411 1.17337 1.12479 0.98622 0.86517 1.24113 1.05453 0.98761 0.95597 1.78152 1.23378 1.12926 0.99882 1.44857 1.30088 1.12890 1.05882 1.20609 1.38522 1.12195 0.77129 0.83922 1.26930 0.94127 0.93849 1.07158 1.70406 1.27038 1.09030 1.38998 0.84632 0.79696 0.78767 0.72961 1.17628 1.20473 1.17591 1.22016 1.10923 1.00993 0.88833 0.88704 0.88815 0.93657 0.90487 0.89526 0.89919 0.89078 0.92062 0.89421 0.89408 0.90771 0.93945 0.88310 0.74020 0.82228 0.91446 0.79040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.48 71.98 0.68 -2.46 16 2 C 0.09 2.12 3.13 29.85 0.09 2.21 16 3 H 0.12 2.00 7.79 -2.39 -0.02 1.98 16 4 O -0.39 -11.50 9.49 -125.59 -1.19 -12.69 16 5 C 0.06 1.22 5.41 71.98 0.39 1.61 16 6 C 0.09 1.79 2.93 30.63 0.09 1.88 16 7 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 8 C -0.14 -1.83 5.42 30.69 0.17 -1.67 16 9 C -0.12 -1.46 6.03 30.71 0.19 -1.27 16 10 C -0.15 -1.92 6.14 30.68 0.19 -1.73 16 11 C 0.05 0.93 6.84 72.01 0.49 1.42 16 12 O -0.40 -9.84 10.37 -144.36 -1.50 -11.34 16 13 C 0.49 18.10 7.15 87.65 0.63 18.73 16 14 O -0.57 -27.95 13.66 15.90 0.22 -27.73 16 15 N -0.61 -21.13 5.43 -303.92 -1.65 -22.78 16 16 C -0.04 -2.04 6.90 37.73 0.26 -1.78 16 17 C -0.06 -3.67 10.85 85.42 0.93 -2.74 16 18 N -0.31 -19.40 10.40 -56.46 -0.59 -19.98 16 19 N -0.17 -9.49 3.74 -190.01 -0.71 -10.20 16 20 C -0.35 -18.89 10.25 84.01 0.86 -18.02 16 21 H 0.14 6.51 7.83 -2.91 -0.02 6.49 16 22 C -0.01 -0.49 5.50 84.95 0.47 -0.02 16 23 N -0.83 -48.82 11.81 21.66 0.26 -48.56 16 24 Si 1.02 38.99 29.55 68.60 2.03 41.01 16 25 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 26 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 28 C -0.08 -3.59 11.49 83.38 0.96 -2.64 16 29 H 0.09 1.37 7.92 -2.39 -0.02 1.35 16 30 H 0.09 1.33 7.87 -2.39 -0.02 1.31 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.21 7.87 -2.39 -0.02 1.19 16 33 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.42 9.94 8.61 -92.71 -0.80 9.14 16 43 H 0.16 9.46 5.92 -2.91 -0.02 9.44 16 44 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.19 6.81 8.06 -2.91 -0.02 6.79 16 Total: -1.00 -85.80 372.96 3.45 -82.34 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.20 Total: 36.41 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 6.39 Total: -6.48 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.69 Total: -101.52 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -2.47 Total: -51.76 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.01 kcal Total: -85.80 3.45 -82.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139317025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.175 kcal (2) G-P(sol) polarization free energy of solvation -85.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds