Wall clock time and date at job start Tue Mar 31 2020 14:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47393 * 2 1 4 4 O 1.42899 * 109.47330 * 239.99848 * 2 1 3 5 5 C 1.42901 * 114.00128 * 89.99858 * 4 2 1 6 6 C 1.53000 * 109.47356 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.48115 * 54.97987 * 6 5 4 8 8 C 1.53098 * 109.47849 * 174.99966 * 6 5 4 9 9 C 1.53174 * 109.16083 * 177.59067 * 8 6 5 10 10 C 1.53186 * 109.03645 * 303.02102 * 9 8 6 11 11 C 1.53089 * 109.16451 * 56.98181 * 10 9 8 12 12 O 1.42903 * 109.47785 * 294.94240 * 6 5 4 13 13 C 1.50705 * 109.47433 * 120.00080 * 2 1 3 14 14 O 1.21300 * 120.00040 * 119.99423 * 13 2 1 15 15 N 1.34778 * 119.99569 * 300.00471 * 13 2 1 16 16 C 1.40592 * 119.99670 * 179.97438 * 15 13 2 17 17 C 1.40643 * 126.08611 * 0.02562 * 16 15 13 18 18 N 1.30906 * 108.39097 * 180.02562 * 17 16 15 19 19 N 1.40069 * 108.40575 * 359.97438 * 18 17 16 20 20 C 1.37325 * 126.06616 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99462 * 174.10550 * 20 19 18 22 22 C 1.38986 * 120.00182 * 354.11636 * 20 19 18 23 23 N 1.31285 * 120.00022 * 5.91187 * 22 20 19 24 24 Si 1.86803 * 119.99646 * 185.91697 * 22 20 19 25 25 H 1.48493 * 109.47177 * 94.98030 * 24 22 20 26 26 H 1.48504 * 109.47067 * 214.97751 * 24 22 20 27 27 H 1.48501 * 109.47469 * 334.97403 * 24 22 20 28 28 C 1.35686 * 126.08308 * 179.71043 * 16 15 13 29 29 H 1.08999 * 109.47092 * 60.00156 * 1 2 3 30 30 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47188 * 299.99640 * 1 2 3 32 32 H 1.09005 * 109.47173 * 300.00282 * 5 4 2 33 33 H 1.08999 * 109.46965 * 59.99725 * 5 4 2 34 34 H 1.08996 * 109.52101 * 297.49658 * 8 6 5 35 35 H 1.08999 * 109.52154 * 57.62228 * 8 6 5 36 36 H 1.08998 * 109.54672 * 62.88711 * 9 8 6 37 37 H 1.09001 * 109.54318 * 183.06706 * 9 8 6 38 38 H 1.09002 * 109.51925 * 176.88821 * 10 9 8 39 39 H 1.09003 * 109.51792 * 297.01103 * 10 9 8 40 40 H 1.08995 * 109.48178 * 62.37209 * 11 10 9 41 41 H 1.08999 * 109.47859 * 182.41094 * 11 10 9 42 42 H 0.96996 * 120.00403 * 359.97438 * 15 13 2 43 43 H 1.08000 * 125.80618 * 0.02562 * 17 16 15 44 44 H 0.97006 * 119.99981 * 179.97438 * 23 22 20 45 45 H 1.07996 * 126.24179 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7079 -0.6409 -3.4792 7 1 2.0195 -1.4637 -3.6716 8 6 2.7968 0.2512 -4.7202 9 6 3.3625 -0.5649 -5.8865 10 6 4.7253 -1.1359 -5.4821 11 6 4.5619 -1.9743 -4.2117 12 8 4.0030 -1.1635 -3.1761 13 6 2.0324 -0.7104 1.2305 14 8 2.7297 -1.6967 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 2.1749 -0.9130 3.6025 17 6 2.9869 -2.0612 3.6226 18 7 3.2142 -2.3845 4.8706 19 7 2.5595 -1.4591 5.6934 20 6 2.5570 -1.4583 7.0667 21 1 2.0978 -0.6425 7.6053 22 6 3.1456 -2.5070 7.7634 23 7 3.8046 -3.4385 7.1140 24 14 2.9988 -2.5912 9.6237 25 1 1.8511 -3.4588 9.9910 26 1 4.2484 -3.1559 10.1938 27 1 2.7806 -1.2258 10.1654 28 6 1.9288 -0.5556 4.8881 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.2537 0.6546 -2.5589 33 1 2.9319 0.9513 -2.0450 34 1 1.8026 0.6154 -4.9789 35 1 3.4525 1.0972 -4.5145 36 1 2.6811 -1.3816 -6.1245 37 1 3.4795 0.0783 -6.7587 38 1 5.1101 -1.7635 -6.2859 39 1 5.4211 -0.3184 -5.2933 40 1 3.8979 -2.8147 -4.4137 41 1 5.5357 -2.3480 -3.8952 42 1 1.1493 0.5388 2.5436 43 1 3.3596 -2.5868 2.7559 44 1 4.2157 -4.1703 7.6003 45 1 1.3393 0.2883 5.2144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139317256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:55 Heat of formation + Delta-G solvation = -50.072309 kcal Electronic energy + Delta-G solvation = -26940.080958 eV Core-core repulsion = 22959.682066 eV Total energy + Delta-G solvation = -3980.398892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.02102 -39.64413 -38.82887 -37.22023 -34.14024 -33.85568 -33.22219 -32.58384 -31.00258 -30.11128 -27.63100 -27.22591 -25.09714 -24.43997 -23.73055 -22.35124 -20.97997 -20.59365 -20.11458 -19.30299 -17.52297 -16.95612 -16.83525 -16.57281 -16.10678 -15.41389 -15.19873 -14.99606 -14.93050 -14.69914 -14.33343 -14.07335 -13.82129 -13.50999 -13.10696 -12.93355 -12.85911 -12.78247 -12.57257 -12.34643 -12.17850 -11.64909 -11.57057 -11.40945 -11.38810 -11.28120 -11.19821 -10.91095 -10.85055 -10.50670 -10.49656 -10.07719 -9.82776 -9.60396 -9.11274 -8.90834 -8.72459 -7.99661 -6.63734 -6.51379 -4.17793 2.88751 3.05323 3.07523 3.13000 3.14963 3.58716 3.73156 3.83357 4.02312 4.46344 4.47923 4.51644 4.58030 4.73190 4.74846 4.83861 4.89934 5.01205 5.05302 5.07078 5.12697 5.17515 5.23213 5.31342 5.42889 5.45191 5.48879 5.56581 5.60668 5.64271 5.71233 5.80565 5.96466 6.04050 6.29237 6.51661 6.92710 7.00680 7.06091 7.14540 7.23421 7.31497 7.91657 8.25884 8.34444 8.70188 8.95000 9.43906 9.73185 10.44985 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.002152 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.180607 B =13009.978255 C =13791.937819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 H 0.083 0.917 4 O -0.345 6.345 5 C 0.067 3.933 6 C 0.094 3.906 7 H 0.066 0.934 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.059 3.941 12 O -0.364 6.364 13 C 0.498 3.502 14 O -0.511 6.511 15 N -0.625 5.625 16 C -0.057 4.057 17 C -0.033 4.033 18 N -0.261 5.261 19 N -0.144 5.144 20 C -0.324 4.324 21 H 0.116 0.884 22 C 0.046 3.954 23 N -0.770 5.770 24 Si 0.934 3.066 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.264 1.264 28 C -0.083 4.083 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.395 0.605 43 H 0.176 0.824 44 H 0.274 0.726 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 9.809 -21.497 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.100 0.900 4 O -0.263 6.263 5 C -0.010 4.010 6 C 0.035 3.965 7 H 0.084 0.916 8 C -0.186 4.186 9 C -0.158 4.158 10 C -0.196 4.196 11 C -0.018 4.018 12 O -0.282 6.282 13 C 0.283 3.717 14 O -0.385 6.385 15 N -0.269 5.269 16 C -0.162 4.162 17 C -0.209 4.209 18 N -0.092 5.092 19 N 0.088 4.912 20 C -0.456 4.456 21 H 0.133 0.867 22 C -0.171 4.171 23 N -0.396 5.396 24 Si 0.758 3.242 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.234 4.234 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.228 0.772 43 H 0.193 0.807 44 H 0.085 0.915 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.854 7.881 -20.600 22.390 hybrid contribution -1.006 1.309 -0.014 1.651 sum -4.860 9.190 -20.614 23.087 Atomic orbital electron populations 1.22256 0.94003 1.03902 1.02659 1.21838 0.94566 0.96143 0.86067 0.89967 1.88118 1.86471 1.33208 1.18487 1.22590 0.99120 0.92963 0.86326 1.22030 0.86009 0.95823 0.92597 0.91556 1.22145 1.02195 0.99207 0.95103 1.21561 0.96810 0.99769 0.97680 1.22228 0.97826 1.00921 0.98622 1.22574 0.99196 0.92496 0.87488 1.88092 1.31725 1.67637 1.40780 1.20063 0.82211 0.85858 0.83605 1.90629 1.36682 1.25484 1.85695 1.42414 1.50967 1.29791 1.03747 1.17256 1.12841 1.01598 0.84526 1.24129 1.02788 0.97547 0.96409 1.78247 1.18796 1.13543 0.98588 1.44540 1.26864 1.14745 1.05057 1.19854 1.39689 1.09227 0.76862 0.86665 1.25640 0.95112 0.95111 1.01246 1.70226 1.23975 1.08997 1.36431 0.85823 0.78405 0.79264 0.80701 1.19684 1.20140 1.18821 1.21238 1.10989 1.01918 0.89292 0.91688 0.90963 0.90917 0.91886 0.92350 0.90681 0.90763 0.91700 0.91355 0.90925 0.91025 0.93184 0.88717 0.77195 0.80726 0.91508 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.42 37.16 0.35 -1.40 16 2 C 0.08 1.02 3.14 -27.88 -0.09 0.93 16 3 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 4 O -0.35 -5.25 9.49 -59.70 -0.57 -5.82 16 5 C 0.07 0.73 5.41 37.16 0.20 0.93 16 6 C 0.09 1.00 2.93 -26.68 -0.08 0.92 16 7 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 8 C -0.15 -1.11 5.42 -26.59 -0.14 -1.25 16 9 C -0.12 -0.82 6.03 -26.55 -0.16 -0.98 16 10 C -0.16 -1.19 6.14 -26.59 -0.16 -1.36 16 11 C 0.06 0.60 6.84 37.20 0.25 0.85 16 12 O -0.36 -4.93 10.37 -40.00 -0.41 -5.34 16 13 C 0.50 9.37 7.20 -10.98 -0.08 9.29 16 14 O -0.51 -12.19 13.65 -14.37 -0.20 -12.38 16 15 N -0.62 -11.41 5.36 -10.00 -0.05 -11.46 16 16 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 17 C -0.03 -0.91 10.85 -17.04 -0.18 -1.10 16 18 N -0.26 -7.81 10.42 30.80 0.32 -7.49 16 19 N -0.14 -4.04 3.74 -11.41 -0.04 -4.09 16 20 C -0.32 -8.73 10.24 -14.81 -0.15 -8.88 16 21 H 0.12 2.77 7.84 -52.48 -0.41 2.35 16 22 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 23 N -0.77 -21.97 11.84 55.49 0.66 -21.32 16 24 Si 0.93 19.25 29.56 -169.99 -5.02 14.22 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 29 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.63 7.56 -51.93 -0.39 0.23 16 32 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 33 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.40 5.40 8.24 -40.82 -0.34 5.06 16 43 H 0.18 4.85 5.92 -52.49 -0.31 4.54 16 44 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -36.76 372.21 -7.70 -44.46 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.88 Total: 8.65 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -1.11 Total: -5.04 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.88 Total: -44.36 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.18 Total: -23.54 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.76 -7.70 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139317256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.616 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds