Wall clock time and date at job start Tue Mar 31 2020 14:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47393 * 2 1 4 4 O 1.42899 * 109.47330 * 239.99848 * 2 1 3 5 5 C 1.42901 * 114.00128 * 89.99858 * 4 2 1 6 6 C 1.53000 * 109.47356 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.48115 * 54.97987 * 6 5 4 8 8 C 1.53098 * 109.47849 * 174.99966 * 6 5 4 9 9 C 1.53174 * 109.16083 * 177.59067 * 8 6 5 10 10 C 1.53186 * 109.03645 * 303.02102 * 9 8 6 11 11 C 1.53089 * 109.16451 * 56.98181 * 10 9 8 12 12 O 1.42903 * 109.47785 * 294.94240 * 6 5 4 13 13 C 1.50705 * 109.47433 * 120.00080 * 2 1 3 14 14 O 1.21300 * 120.00040 * 119.99423 * 13 2 1 15 15 N 1.34778 * 119.99569 * 300.00471 * 13 2 1 16 16 C 1.40592 * 119.99670 * 179.97438 * 15 13 2 17 17 C 1.40643 * 126.08611 * 0.02562 * 16 15 13 18 18 N 1.30906 * 108.39097 * 180.02562 * 17 16 15 19 19 N 1.40069 * 108.40575 * 359.97438 * 18 17 16 20 20 C 1.37325 * 126.06616 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99462 * 174.10550 * 20 19 18 22 22 C 1.38986 * 120.00182 * 354.11636 * 20 19 18 23 23 N 1.31285 * 120.00022 * 5.91187 * 22 20 19 24 24 Si 1.86803 * 119.99646 * 185.91697 * 22 20 19 25 25 H 1.48493 * 109.47177 * 94.98030 * 24 22 20 26 26 H 1.48504 * 109.47067 * 214.97751 * 24 22 20 27 27 H 1.48501 * 109.47469 * 334.97403 * 24 22 20 28 28 C 1.35686 * 126.08308 * 179.71043 * 16 15 13 29 29 H 1.08999 * 109.47092 * 60.00156 * 1 2 3 30 30 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47188 * 299.99640 * 1 2 3 32 32 H 1.09005 * 109.47173 * 300.00282 * 5 4 2 33 33 H 1.08999 * 109.46965 * 59.99725 * 5 4 2 34 34 H 1.08996 * 109.52101 * 297.49658 * 8 6 5 35 35 H 1.08999 * 109.52154 * 57.62228 * 8 6 5 36 36 H 1.08998 * 109.54672 * 62.88711 * 9 8 6 37 37 H 1.09001 * 109.54318 * 183.06706 * 9 8 6 38 38 H 1.09002 * 109.51925 * 176.88821 * 10 9 8 39 39 H 1.09003 * 109.51792 * 297.01103 * 10 9 8 40 40 H 1.08995 * 109.48178 * 62.37209 * 11 10 9 41 41 H 1.08999 * 109.47859 * 182.41094 * 11 10 9 42 42 H 0.96996 * 120.00403 * 359.97438 * 15 13 2 43 43 H 1.08000 * 125.80618 * 0.02562 * 17 16 15 44 44 H 0.97006 * 119.99981 * 179.97438 * 23 22 20 45 45 H 1.07996 * 126.24179 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7079 -0.6409 -3.4792 7 1 2.0195 -1.4637 -3.6716 8 6 2.7968 0.2512 -4.7202 9 6 3.3625 -0.5649 -5.8865 10 6 4.7253 -1.1359 -5.4821 11 6 4.5619 -1.9743 -4.2117 12 8 4.0030 -1.1635 -3.1761 13 6 2.0324 -0.7104 1.2305 14 8 2.7297 -1.6967 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 2.1749 -0.9130 3.6025 17 6 2.9869 -2.0612 3.6226 18 7 3.2142 -2.3845 4.8706 19 7 2.5595 -1.4591 5.6934 20 6 2.5570 -1.4583 7.0667 21 1 2.0978 -0.6425 7.6053 22 6 3.1456 -2.5070 7.7634 23 7 3.8046 -3.4385 7.1140 24 14 2.9988 -2.5912 9.6237 25 1 1.8511 -3.4588 9.9910 26 1 4.2484 -3.1559 10.1938 27 1 2.7806 -1.2258 10.1654 28 6 1.9288 -0.5556 4.8881 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.2537 0.6546 -2.5589 33 1 2.9319 0.9513 -2.0450 34 1 1.8026 0.6154 -4.9789 35 1 3.4525 1.0972 -4.5145 36 1 2.6811 -1.3816 -6.1245 37 1 3.4795 0.0783 -6.7587 38 1 5.1101 -1.7635 -6.2859 39 1 5.4211 -0.3184 -5.2933 40 1 3.8979 -2.8147 -4.4137 41 1 5.5357 -2.3480 -3.8952 42 1 1.1493 0.5388 2.5436 43 1 3.3596 -2.5868 2.7559 44 1 4.2157 -4.1703 7.6003 45 1 1.3393 0.2883 5.2144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139317256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:54 Heat of formation + Delta-G solvation = -76.258626 kcal Electronic energy + Delta-G solvation = -26941.216482 eV Core-core repulsion = 22959.682066 eV Total energy + Delta-G solvation = -3981.534416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74570 -40.69538 -40.22993 -38.42149 -35.92140 -35.03746 -34.55226 -33.48903 -32.32366 -31.82452 -29.46718 -27.98635 -26.92370 -25.35402 -24.81668 -23.13586 -22.86078 -21.85598 -21.21626 -21.04656 -19.31202 -18.25612 -17.93232 -17.51458 -17.40194 -16.92705 -16.65383 -16.25090 -16.05668 -15.59539 -15.46466 -15.41462 -15.15116 -14.88129 -14.77953 -14.52192 -13.64921 -13.58200 -13.52276 -13.42738 -13.27631 -13.24286 -13.00784 -12.91648 -12.78425 -12.28678 -12.13753 -12.05982 -11.97986 -11.83428 -11.57997 -11.23337 -11.01853 -10.89370 -10.81050 -10.38914 -10.33517 -10.09908 -8.52547 -8.46729 -6.24013 1.22299 1.39978 1.52509 1.58789 1.85652 1.88502 2.17527 2.51309 2.77694 2.83673 3.00837 3.08948 3.75143 3.85902 3.92305 3.94711 3.96879 4.05173 4.14160 4.17436 4.31296 4.41176 4.44859 4.49355 4.60303 4.66028 4.69975 4.75706 4.85252 4.87529 4.93590 5.01301 5.06384 5.08955 5.11332 5.17020 5.25100 5.29888 5.38013 5.47470 5.96512 6.13180 6.32571 6.36632 6.73678 6.78897 7.42215 7.48892 7.68633 8.53094 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.002152 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.180607 B =13009.978255 C =13791.937819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 H 0.119 0.881 4 O -0.385 6.385 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.058 0.942 8 C -0.141 4.141 9 C -0.121 4.121 10 C -0.153 4.153 11 C 0.051 3.949 12 O -0.405 6.405 13 C 0.490 3.510 14 O -0.570 6.570 15 N -0.611 5.611 16 C -0.043 4.043 17 C -0.064 4.064 18 N -0.312 5.312 19 N -0.168 5.168 20 C -0.353 4.353 21 H 0.144 0.856 22 C -0.009 4.009 23 N -0.827 5.827 24 Si 1.021 2.979 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.240 1.240 28 C -0.077 4.077 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.422 0.578 43 H 0.160 0.840 44 H 0.276 0.724 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 13.111 -22.034 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.137 0.863 4 O -0.304 6.304 5 C -0.015 4.015 6 C 0.027 3.973 7 H 0.076 0.924 8 C -0.178 4.178 9 C -0.159 4.159 10 C -0.190 4.190 11 C -0.026 4.026 12 O -0.324 6.324 13 C 0.277 3.723 14 O -0.448 6.448 15 N -0.258 5.258 16 C -0.149 4.149 17 C -0.239 4.239 18 N -0.144 5.144 19 N 0.062 4.938 20 C -0.484 4.484 21 H 0.161 0.839 22 C -0.221 4.221 23 N -0.455 5.455 24 Si 0.840 3.160 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.163 1.163 28 C -0.227 4.227 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.260 0.740 43 H 0.177 0.823 44 H 0.086 0.914 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.216 11.253 -21.181 24.778 hybrid contribution -0.287 0.308 0.009 0.421 sum -6.503 11.561 -21.172 24.984 Atomic orbital electron populations 1.22263 0.91026 1.03332 1.05470 1.21907 0.96467 0.96326 0.82951 0.86343 1.88084 1.86976 1.35497 1.19858 1.22903 1.01095 0.92504 0.84979 1.22277 0.84649 0.96265 0.94124 0.92438 1.22113 1.03680 0.98456 0.93589 1.21606 0.96059 1.00147 0.98049 1.22181 0.98652 1.00631 0.97574 1.22724 0.98800 0.92832 0.88234 1.88030 1.33250 1.68373 1.42789 1.21331 0.80672 0.85141 0.85111 1.90612 1.39217 1.28317 1.86642 1.42334 1.50991 1.30231 1.02241 1.17342 1.10886 1.00194 0.86493 1.24099 1.04708 0.99578 0.95559 1.78146 1.20797 1.15714 0.99761 1.44864 1.27723 1.15383 1.05790 1.20651 1.40327 1.10565 0.76898 0.83911 1.26942 0.93870 0.94105 1.07154 1.70419 1.25795 1.10202 1.39045 0.84551 0.78132 0.80302 0.73029 1.19187 1.20285 1.16297 1.22016 1.09959 1.01962 0.88753 0.88214 0.93221 0.88757 0.87971 0.92257 0.88237 0.90747 0.91389 0.89422 0.89294 0.91407 0.93275 0.89248 0.74046 0.82331 0.91447 0.78997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.42 71.98 0.68 -2.12 16 2 C 0.08 2.10 3.14 29.85 0.09 2.19 16 3 H 0.12 2.08 7.79 -2.39 -0.02 2.06 16 4 O -0.39 -11.46 9.49 -125.58 -1.19 -12.65 16 5 C 0.06 1.21 5.41 71.98 0.39 1.60 16 6 C 0.08 1.74 2.93 30.63 0.09 1.83 16 7 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 8 C -0.14 -1.78 5.42 30.69 0.17 -1.61 16 9 C -0.12 -1.38 6.03 30.71 0.19 -1.20 16 10 C -0.15 -2.17 6.14 30.69 0.19 -1.98 16 11 C 0.05 1.05 6.84 72.01 0.49 1.55 16 12 O -0.40 -11.32 10.37 -144.42 -1.50 -12.82 16 13 C 0.49 18.37 7.20 87.66 0.63 19.00 16 14 O -0.57 -28.55 13.65 15.94 0.22 -28.33 16 15 N -0.61 -21.49 5.36 -303.92 -1.63 -23.12 16 16 C -0.04 -2.05 6.90 37.73 0.26 -1.79 16 17 C -0.06 -3.73 10.85 85.42 0.93 -2.80 16 18 N -0.31 -19.62 10.42 -56.47 -0.59 -20.21 16 19 N -0.17 -9.58 3.74 -190.01 -0.71 -10.29 16 20 C -0.35 -18.99 10.24 84.01 0.86 -18.13 16 21 H 0.14 6.58 7.84 -2.91 -0.02 6.56 16 22 C -0.01 -0.50 5.50 84.95 0.47 -0.03 16 23 N -0.83 -49.11 11.84 21.66 0.26 -48.85 16 24 Si 1.02 39.26 29.56 68.60 2.03 41.29 16 25 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 27 H -0.24 -8.22 7.11 99.48 0.71 -7.51 16 28 C -0.08 -3.59 11.49 83.38 0.96 -2.63 16 29 H 0.10 1.06 7.87 -2.39 -0.02 1.04 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.20 7.56 -2.39 -0.02 1.18 16 32 H 0.10 1.17 7.87 -2.38 -0.02 1.15 16 33 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.42 10.12 8.24 -92.71 -0.76 9.35 16 43 H 0.16 9.55 5.92 -2.91 -0.02 9.54 16 44 H 0.28 15.06 8.31 -92.70 -0.77 14.29 16 45 H 0.19 6.89 8.06 -2.91 -0.02 6.86 16 Total: -1.00 -88.04 372.21 3.51 -84.54 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.24 Total: 36.58 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 6.39 Total: -6.14 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -2.67 Total: -102.47 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -2.47 Total: -53.80 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -88.04 3.51 -84.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139317256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.277 kcal (2) G-P(sol) polarization free energy of solvation -88.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds