Wall clock time and date at job start Tue Mar 31 2020 14:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 O 1.42904 * 109.47362 * 120.00056 * 2 1 3 5 5 C 1.42895 * 114.00002 * 270.00121 * 4 2 1 6 6 C 1.52995 * 109.47248 * 179.97438 * 5 4 2 7 7 H 1.08994 * 109.48317 * 54.97328 * 6 5 4 8 8 C 1.53092 * 109.48144 * 174.99972 * 6 5 4 9 9 C 1.53174 * 109.16438 * 177.59151 * 8 6 5 10 10 C 1.53181 * 109.03603 * 303.01796 * 9 8 6 11 11 C 1.53095 * 109.16422 * 56.97878 * 10 9 8 12 12 O 1.42907 * 109.41526 * 302.39305 * 11 10 9 13 13 C 1.50700 * 109.46915 * 239.99799 * 2 1 3 14 14 O 1.21304 * 120.00154 * 245.00035 * 13 2 1 15 15 N 1.34782 * 119.99924 * 65.00220 * 13 2 1 16 16 C 1.40597 * 119.99766 * 179.97438 * 15 13 2 17 17 C 1.40637 * 126.08318 * 359.69043 * 16 15 13 18 18 N 1.30913 * 108.38840 * 180.26058 * 17 16 15 19 19 N 1.40069 * 108.40359 * 0.02562 * 18 17 16 20 20 C 1.37322 * 126.06662 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99975 * 174.15136 * 20 19 18 22 22 C 1.38983 * 120.00052 * 354.15291 * 20 19 18 23 23 N 1.31293 * 120.00219 * 5.94003 * 22 20 19 24 24 Si 1.86805 * 120.00091 * 185.93808 * 22 20 19 25 25 H 1.48500 * 109.47081 * 94.97874 * 24 22 20 26 26 H 1.48493 * 109.47461 * 214.97798 * 24 22 20 27 27 H 1.48503 * 109.46911 * 334.98521 * 24 22 20 28 28 C 1.35677 * 126.07832 * 180.02562 * 16 15 13 29 29 H 1.09007 * 109.47616 * 59.99845 * 1 2 3 30 30 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47071 * 300.00149 * 1 2 3 32 32 H 1.09001 * 109.46711 * 299.99863 * 5 4 2 33 33 H 1.08999 * 109.47213 * 59.99086 * 5 4 2 34 34 H 1.09004 * 109.52033 * 297.49431 * 8 6 5 35 35 H 1.09003 * 109.52596 * 57.61758 * 8 6 5 36 36 H 1.09002 * 109.54572 * 62.88018 * 9 8 6 37 37 H 1.09004 * 109.54769 * 183.06289 * 9 8 6 38 38 H 1.08998 * 109.52420 * 176.88560 * 10 9 8 39 39 H 1.09001 * 109.52259 * 297.01024 * 10 9 8 40 40 H 1.08998 * 109.48084 * 62.37570 * 11 10 9 41 41 H 1.08996 * 109.47711 * 182.41203 * 11 10 9 42 42 H 0.96995 * 119.99675 * 359.97438 * 15 13 2 43 43 H 1.08006 * 125.80870 * 0.24006 * 17 16 15 44 44 H 0.96999 * 119.99960 * 180.02562 * 23 22 20 45 45 H 1.08003 * 126.24792 * 359.77240 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6408 3.4791 7 1 3.6064 -1.1838 3.1860 8 6 3.0340 0.2930 4.6476 9 6 3.4842 -0.5434 5.8492 10 6 2.3829 -1.5490 6.1987 11 6 2.0818 -2.4118 4.9704 12 8 1.6991 -1.5699 3.8808 13 6 2.0322 -0.7105 -1.2304 14 8 2.6530 -1.7469 -1.1215 15 7 1.7918 -0.1942 -2.4520 16 6 2.2609 -0.8568 -3.6000 17 6 2.9955 -2.0558 -3.6222 18 7 3.2560 -2.3575 -4.8691 19 7 2.7008 -1.3668 -5.6890 20 6 2.7599 -1.3256 -7.0604 21 1 2.2165 -0.5652 -7.6017 22 6 3.5190 -2.2623 -7.7517 23 7 4.0845 -3.2553 -7.1052 24 14 3.7348 -2.1086 -9.6009 25 1 5.0009 -1.3900 -9.8935 26 1 3.7827 -3.4630 -10.2079 27 1 2.5922 -1.3505 -10.1712 28 6 2.0908 -0.4498 -4.8830 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9319 0.9513 2.0449 33 1 1.2538 0.6547 2.5588 34 1 3.8343 0.9738 4.3574 35 1 2.1464 0.8669 4.9140 36 1 4.4002 -1.0784 5.5985 37 1 3.6659 0.1112 6.7017 38 1 2.7174 -2.1856 7.0178 39 1 1.4821 -1.0133 6.4983 40 1 2.9721 -2.9780 4.6969 41 1 1.2690 -3.1006 5.2004 42 1 1.2951 0.6344 -2.5392 43 1 3.2943 -2.6300 -2.7575 44 1 4.6146 -3.9088 -7.5876 45 1 1.5686 0.4383 -5.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139317364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:58 Heat of formation + Delta-G solvation = -50.935949 kcal Electronic energy + Delta-G solvation = -26871.902398 eV Core-core repulsion = 22891.466055 eV Total energy + Delta-G solvation = -3980.436342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.03878 -39.67106 -38.84628 -37.23156 -34.15590 -33.88459 -33.22539 -32.60373 -30.99936 -30.12897 -27.65958 -27.22621 -25.12451 -24.47879 -23.69943 -22.36980 -20.99664 -20.61274 -20.12476 -19.33144 -17.55548 -17.00127 -16.74925 -16.64496 -16.09257 -15.42687 -15.31025 -14.98562 -14.86210 -14.71399 -14.38365 -14.11469 -13.82604 -13.52963 -13.11165 -12.98369 -12.86658 -12.75487 -12.70356 -12.30513 -11.94766 -11.67038 -11.63147 -11.49380 -11.39316 -11.25039 -11.24015 -10.92491 -10.86555 -10.55676 -10.50736 -10.09621 -9.80914 -9.65058 -9.13102 -8.93400 -8.74494 -8.01465 -6.65770 -6.52908 -4.19414 2.87013 3.04246 3.07101 3.11042 3.12964 3.53941 3.71231 3.82486 4.02111 4.44651 4.46239 4.50416 4.56289 4.72857 4.74034 4.84002 4.89838 4.97522 5.04264 5.10979 5.12028 5.20063 5.22505 5.28917 5.39512 5.45266 5.50383 5.56435 5.60730 5.67470 5.71308 5.77286 5.95073 6.10642 6.27648 6.49708 6.91027 6.98950 7.03225 7.10235 7.21887 7.29471 7.90045 8.23583 8.32423 8.68229 8.92191 9.42161 9.71304 10.43462 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033815 B = 0.002046 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.842781 B =13682.447314 C =14078.859770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 H 0.081 0.919 4 O -0.345 6.345 5 C 0.067 3.933 6 C 0.093 3.907 7 H 0.069 0.931 8 C -0.148 4.148 9 C -0.122 4.122 10 C -0.157 4.157 11 C 0.059 3.941 12 O -0.368 6.368 13 C 0.499 3.501 14 O -0.514 6.514 15 N -0.624 5.624 16 C -0.057 4.057 17 C -0.033 4.033 18 N -0.261 5.261 19 N -0.144 5.144 20 C -0.324 4.324 21 H 0.116 0.884 22 C 0.046 3.954 23 N -0.770 5.770 24 Si 0.934 3.066 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.264 1.264 28 C -0.083 4.083 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.396 0.604 43 H 0.176 0.824 44 H 0.274 0.726 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 9.957 21.307 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 H 0.098 0.902 4 O -0.263 6.263 5 C -0.010 4.010 6 C 0.035 3.965 7 H 0.087 0.913 8 C -0.186 4.186 9 C -0.159 4.159 10 C -0.195 4.195 11 C -0.018 4.018 12 O -0.287 6.287 13 C 0.283 3.717 14 O -0.389 6.389 15 N -0.268 5.268 16 C -0.163 4.163 17 C -0.209 4.209 18 N -0.092 5.092 19 N 0.088 4.912 20 C -0.456 4.456 21 H 0.134 0.866 22 C -0.171 4.171 23 N -0.396 5.396 24 Si 0.758 3.242 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.234 4.234 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.229 0.771 43 H 0.193 0.807 44 H 0.085 0.915 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.656 7.931 20.490 22.274 hybrid contribution -0.407 1.509 -0.096 1.566 sum -4.063 9.440 20.394 22.837 Atomic orbital electron populations 1.22217 0.93794 1.04028 1.02579 1.21830 0.94935 0.95864 0.85911 0.90160 1.88127 1.86478 1.33327 1.18361 1.22587 1.00186 0.92456 0.85730 1.22050 0.92011 0.90423 0.92009 0.91271 1.22139 1.02333 0.98556 0.95584 1.21567 0.98467 0.97991 0.97882 1.22217 0.99606 0.98899 0.98793 1.22570 1.00943 0.92285 0.85958 1.88018 1.39797 1.50084 1.50770 1.20080 0.81650 0.86298 0.83645 1.90617 1.39500 1.23041 1.85705 1.42411 1.54876 1.25616 1.03921 1.17254 1.14296 1.00125 0.84601 1.24123 1.03331 0.96996 0.96440 1.78251 1.21612 1.10587 0.98736 1.44542 1.29347 1.12118 1.05162 1.19858 1.31874 1.16751 0.77141 0.86644 1.25644 0.95522 0.94724 1.01222 1.70227 1.23920 1.08987 1.36494 0.85820 0.79332 0.78405 0.80622 1.19682 1.20128 1.18806 1.21242 1.12534 1.00299 0.89330 0.91048 0.90897 0.91580 0.91796 0.92427 0.90573 0.90832 0.91593 0.91328 0.90930 0.91104 0.93063 0.88846 0.77149 0.80747 0.91498 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.48 37.15 0.35 -1.51 16 2 C 0.08 1.03 3.13 -27.89 -0.09 0.94 16 3 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 4 O -0.35 -5.26 9.49 -59.67 -0.57 -5.82 16 5 C 0.07 0.73 5.41 37.16 0.20 0.93 16 6 C 0.09 0.99 2.93 -26.69 -0.08 0.91 16 7 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.15 -1.12 5.42 -26.59 -0.14 -1.26 16 9 C -0.12 -0.82 6.03 -26.55 -0.16 -0.98 16 10 C -0.16 -1.10 6.14 -26.59 -0.16 -1.27 16 11 C 0.06 0.54 6.84 37.21 0.25 0.80 16 12 O -0.37 -4.54 10.37 -40.01 -0.42 -4.95 16 13 C 0.50 9.26 7.15 -10.98 -0.08 9.18 16 14 O -0.51 -12.05 13.66 -14.32 -0.20 -12.25 16 15 N -0.62 -11.28 5.43 -10.00 -0.05 -11.34 16 16 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 17 C -0.03 -0.91 10.85 -17.04 -0.18 -1.09 16 18 N -0.26 -7.76 10.42 30.80 0.32 -7.44 16 19 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 20 C -0.32 -8.68 10.24 -14.82 -0.15 -8.83 16 21 H 0.12 2.76 7.84 -52.48 -0.41 2.34 16 22 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 23 N -0.77 -21.86 11.84 55.49 0.66 -21.20 16 24 Si 0.93 19.15 29.56 -169.99 -5.02 14.12 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 28 C -0.08 -1.98 11.49 -16.40 -0.19 -2.17 16 29 H 0.07 0.66 7.92 -51.92 -0.41 0.25 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.40 5.35 8.61 -40.82 -0.35 5.00 16 43 H 0.18 4.78 5.92 -52.48 -0.31 4.47 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.15 2.84 8.06 -52.48 -0.42 2.42 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -36.18 373.00 -7.71 -43.89 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.91 Total: 8.59 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.10 Total: -5.16 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.88 Total: -44.04 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -1.18 Total: -23.03 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.18 -7.71 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139317364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.044 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds