Wall clock time and date at job start Tue Mar 31 2020 14:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 O 1.42904 * 109.47362 * 120.00056 * 2 1 3 5 5 C 1.42895 * 114.00002 * 270.00121 * 4 2 1 6 6 C 1.52995 * 109.47248 * 179.97438 * 5 4 2 7 7 H 1.08994 * 109.48317 * 54.97328 * 6 5 4 8 8 C 1.53092 * 109.48144 * 174.99972 * 6 5 4 9 9 C 1.53174 * 109.16438 * 177.59151 * 8 6 5 10 10 C 1.53181 * 109.03603 * 303.01796 * 9 8 6 11 11 C 1.53095 * 109.16422 * 56.97878 * 10 9 8 12 12 O 1.42907 * 109.41526 * 302.39305 * 11 10 9 13 13 C 1.50700 * 109.46915 * 239.99799 * 2 1 3 14 14 O 1.21304 * 120.00154 * 245.00035 * 13 2 1 15 15 N 1.34782 * 119.99924 * 65.00220 * 13 2 1 16 16 C 1.40597 * 119.99766 * 179.97438 * 15 13 2 17 17 C 1.40637 * 126.08318 * 359.69043 * 16 15 13 18 18 N 1.30913 * 108.38840 * 180.26058 * 17 16 15 19 19 N 1.40069 * 108.40359 * 0.02562 * 18 17 16 20 20 C 1.37322 * 126.06662 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99975 * 174.15136 * 20 19 18 22 22 C 1.38983 * 120.00052 * 354.15291 * 20 19 18 23 23 N 1.31293 * 120.00219 * 5.94003 * 22 20 19 24 24 Si 1.86805 * 120.00091 * 185.93808 * 22 20 19 25 25 H 1.48500 * 109.47081 * 94.97874 * 24 22 20 26 26 H 1.48493 * 109.47461 * 214.97798 * 24 22 20 27 27 H 1.48503 * 109.46911 * 334.98521 * 24 22 20 28 28 C 1.35677 * 126.07832 * 180.02562 * 16 15 13 29 29 H 1.09007 * 109.47616 * 59.99845 * 1 2 3 30 30 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47071 * 300.00149 * 1 2 3 32 32 H 1.09001 * 109.46711 * 299.99863 * 5 4 2 33 33 H 1.08999 * 109.47213 * 59.99086 * 5 4 2 34 34 H 1.09004 * 109.52033 * 297.49431 * 8 6 5 35 35 H 1.09003 * 109.52596 * 57.61758 * 8 6 5 36 36 H 1.09002 * 109.54572 * 62.88018 * 9 8 6 37 37 H 1.09004 * 109.54769 * 183.06289 * 9 8 6 38 38 H 1.08998 * 109.52420 * 176.88560 * 10 9 8 39 39 H 1.09001 * 109.52259 * 297.01024 * 10 9 8 40 40 H 1.08998 * 109.48084 * 62.37570 * 11 10 9 41 41 H 1.08996 * 109.47711 * 182.41203 * 11 10 9 42 42 H 0.96995 * 119.99675 * 359.97438 * 15 13 2 43 43 H 1.08006 * 125.80870 * 0.24006 * 17 16 15 44 44 H 0.96999 * 119.99960 * 180.02562 * 23 22 20 45 45 H 1.08003 * 126.24792 * 359.77240 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6408 3.4791 7 1 3.6064 -1.1838 3.1860 8 6 3.0340 0.2930 4.6476 9 6 3.4842 -0.5434 5.8492 10 6 2.3829 -1.5490 6.1987 11 6 2.0818 -2.4118 4.9704 12 8 1.6991 -1.5699 3.8808 13 6 2.0322 -0.7105 -1.2304 14 8 2.6530 -1.7469 -1.1215 15 7 1.7918 -0.1942 -2.4520 16 6 2.2609 -0.8568 -3.6000 17 6 2.9955 -2.0558 -3.6222 18 7 3.2560 -2.3575 -4.8691 19 7 2.7008 -1.3668 -5.6890 20 6 2.7599 -1.3256 -7.0604 21 1 2.2165 -0.5652 -7.6017 22 6 3.5190 -2.2623 -7.7517 23 7 4.0845 -3.2553 -7.1052 24 14 3.7348 -2.1086 -9.6009 25 1 5.0009 -1.3900 -9.8935 26 1 3.7827 -3.4630 -10.2079 27 1 2.5922 -1.3505 -10.1712 28 6 2.0908 -0.4498 -4.8830 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.9319 0.9513 2.0449 33 1 1.2538 0.6547 2.5588 34 1 3.8343 0.9738 4.3574 35 1 2.1464 0.8669 4.9140 36 1 4.4002 -1.0784 5.5985 37 1 3.6659 0.1112 6.7017 38 1 2.7174 -2.1856 7.0178 39 1 1.4821 -1.0133 6.4983 40 1 2.9721 -2.9780 4.6969 41 1 1.2690 -3.1006 5.2004 42 1 1.2951 0.6344 -2.5392 43 1 3.2943 -2.6300 -2.7575 44 1 4.6146 -3.9088 -7.5876 45 1 1.5686 0.4383 -5.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139317364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:58 Heat of formation + Delta-G solvation = -76.397741 kcal Electronic energy + Delta-G solvation = -26873.006504 eV Core-core repulsion = 22891.466055 eV Total energy + Delta-G solvation = -3981.540448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74811 -40.70053 -40.23231 -38.42405 -35.92063 -35.03026 -34.55042 -33.49712 -32.32120 -31.83259 -29.48479 -27.97680 -26.93544 -25.39686 -24.77708 -23.14765 -22.86256 -21.83910 -21.22167 -21.07042 -19.32685 -18.27466 -17.88340 -17.53457 -17.39489 -16.90372 -16.66481 -16.33193 -15.93784 -15.67523 -15.50336 -15.34725 -15.18742 -14.90251 -14.76956 -14.49984 -13.69648 -13.60260 -13.53330 -13.46245 -13.32397 -13.24299 -12.94170 -12.81862 -12.73202 -12.41774 -12.15678 -12.06163 -11.96295 -11.83623 -11.58839 -11.26701 -11.01995 -10.87085 -10.80511 -10.41236 -10.34069 -10.09838 -8.52783 -8.46837 -6.24058 1.21935 1.40076 1.51924 1.58760 1.85285 1.87156 2.17310 2.51081 2.76777 2.81555 3.01026 3.08835 3.75539 3.84976 3.91845 3.94085 3.98227 4.06316 4.08444 4.18701 4.31807 4.42110 4.44955 4.50402 4.60338 4.65197 4.67944 4.75112 4.84949 4.87330 4.93612 5.01376 5.05834 5.08687 5.11633 5.16456 5.23927 5.29917 5.37500 5.46909 5.96479 6.12605 6.31019 6.34331 6.73664 6.78228 7.41115 7.48584 7.68561 8.52986 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033815 B = 0.002046 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.842781 B =13682.447314 C =14078.859770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 H 0.124 0.876 4 O -0.386 6.386 5 C 0.061 3.939 6 C 0.086 3.914 7 H 0.046 0.954 8 C -0.141 4.141 9 C -0.124 4.124 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.397 6.397 13 C 0.492 3.508 14 O -0.571 6.571 15 N -0.610 5.610 16 C -0.043 4.043 17 C -0.064 4.064 18 N -0.312 5.312 19 N -0.169 5.169 20 C -0.353 4.353 21 H 0.143 0.857 22 C -0.009 4.009 23 N -0.826 5.826 24 Si 1.021 2.979 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.241 1.241 28 C -0.076 4.076 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.422 0.578 43 H 0.161 0.839 44 H 0.276 0.724 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 13.546 21.658 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.142 0.858 4 O -0.304 6.304 5 C -0.015 4.015 6 C 0.028 3.972 7 H 0.064 0.936 8 C -0.178 4.178 9 C -0.161 4.161 10 C -0.189 4.189 11 C -0.026 4.026 12 O -0.316 6.316 13 C 0.280 3.720 14 O -0.449 6.449 15 N -0.257 5.257 16 C -0.149 4.149 17 C -0.239 4.239 18 N -0.144 5.144 19 N 0.062 4.938 20 C -0.484 4.484 21 H 0.161 0.839 22 C -0.220 4.220 23 N -0.454 5.454 24 Si 0.839 3.161 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.163 1.163 28 C -0.226 4.226 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.117 0.883 42 H 0.260 0.740 43 H 0.178 0.822 44 H 0.086 0.914 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.139 11.585 20.882 24.427 hybrid contribution 0.007 0.401 -0.048 0.403 sum -5.132 11.986 20.834 24.577 Atomic orbital electron populations 1.22223 0.91627 1.03042 1.05122 1.21892 0.96245 0.96504 0.82917 0.85839 1.88095 1.86916 1.35710 1.19721 1.22876 1.01874 0.92392 0.84310 1.22194 0.90806 0.90738 0.93419 0.93631 1.22103 1.03223 0.98092 0.94409 1.21619 0.98069 0.98145 0.98292 1.22170 0.99936 0.98858 0.97912 1.22745 1.00835 0.92632 0.86401 1.87965 1.40778 1.50913 1.51970 1.21267 0.80061 0.85651 0.85048 1.90602 1.41898 1.25780 1.86607 1.42324 1.54759 1.26232 1.02406 1.17334 1.12359 0.98723 0.86530 1.24110 1.05171 0.98988 0.95614 1.78150 1.23600 1.12735 0.99931 1.44861 1.30342 1.12683 1.05889 1.20645 1.32728 1.17852 0.77217 0.83936 1.26933 0.94401 0.93706 1.06992 1.70417 1.25487 1.10468 1.39074 0.84557 0.79957 0.78401 0.73141 1.19174 1.20295 1.16336 1.22018 1.11126 1.00691 0.88813 0.88697 0.93648 0.88818 0.89527 0.90493 0.89093 0.89914 0.92077 0.89423 0.89408 0.90769 0.93940 0.88303 0.74013 0.82226 0.91446 0.79023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.48 71.98 0.68 -2.45 16 2 C 0.09 2.11 3.13 29.85 0.09 2.21 16 3 H 0.12 2.00 7.79 -2.39 -0.02 1.98 16 4 O -0.39 -11.49 9.49 -125.61 -1.19 -12.68 16 5 C 0.06 1.22 5.41 71.98 0.39 1.61 16 6 C 0.09 1.79 2.93 30.62 0.09 1.88 16 7 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 8 C -0.14 -1.84 5.42 30.68 0.17 -1.67 16 9 C -0.12 -1.46 6.03 30.71 0.19 -1.28 16 10 C -0.15 -1.91 6.14 30.69 0.19 -1.73 16 11 C 0.05 0.93 6.84 72.01 0.49 1.43 16 12 O -0.40 -9.83 10.37 -144.41 -1.50 -11.33 16 13 C 0.49 18.08 7.15 87.66 0.63 18.71 16 14 O -0.57 -27.92 13.66 15.88 0.22 -27.71 16 15 N -0.61 -21.10 5.43 -303.93 -1.65 -22.75 16 16 C -0.04 -2.04 6.90 37.73 0.26 -1.78 16 17 C -0.06 -3.64 10.85 85.42 0.93 -2.71 16 18 N -0.31 -19.44 10.42 -56.47 -0.59 -20.03 16 19 N -0.17 -9.51 3.74 -190.02 -0.71 -10.22 16 20 C -0.35 -18.88 10.24 84.01 0.86 -18.02 16 21 H 0.14 6.53 7.84 -2.91 -0.02 6.51 16 22 C -0.01 -0.47 5.50 84.95 0.47 -0.01 16 23 N -0.83 -48.79 11.84 21.66 0.26 -48.53 16 24 Si 1.02 39.02 29.56 68.60 2.03 41.05 16 25 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 26 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 27 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 28 C -0.08 -3.53 11.49 83.38 0.96 -2.58 16 29 H 0.09 1.36 7.92 -2.38 -0.02 1.34 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.32 7.87 -2.39 -0.02 1.30 16 32 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.08 1.21 7.87 -2.39 -0.02 1.19 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.42 9.92 8.61 -92.71 -0.80 9.12 16 43 H 0.16 9.45 5.92 -2.91 -0.02 9.43 16 44 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.19 6.81 8.06 -2.91 -0.02 6.78 16 Total: -1.00 -85.81 373.00 3.45 -82.36 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.20 Total: 36.20 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.39 Total: -6.37 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.69 Total: -101.53 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -2.47 Total: -51.72 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -85.81 3.45 -82.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139317364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.966 kcal (2) G-P(sol) polarization free energy of solvation -85.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds