Wall clock time and date at job start Tue Mar 31 2020 14:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47313 * 2 1 4 4 C 1.47439 * 110.99969 * 56.53427 * 3 2 1 5 5 C 1.54312 * 107.23430 * 123.25772 * 4 3 2 6 6 C 1.55144 * 103.01867 * 22.28791 * 5 4 3 7 7 C 1.47840 * 111.00336 * 177.38229 * 3 2 1 8 8 H 1.09001 * 110.36890 * 332.57344 * 7 3 2 9 9 C 1.52994 * 110.37738 * 94.80648 * 7 3 2 10 10 N 1.46507 * 109.47102 * 297.13201 * 9 7 3 11 11 C 1.34772 * 119.99890 * 173.44565 * 10 9 7 12 12 S 1.71195 * 120.00214 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.40610 * 120.00057 * 184.63480 * 13 11 10 15 15 C 1.40659 * 126.07817 * 319.55521 * 14 13 11 16 16 N 1.30910 * 108.38651 * 179.73249 * 15 14 13 17 17 N 1.40067 * 108.40834 * 0.38288 * 16 15 14 18 18 C 1.37319 * 126.07354 * 179.87465 * 17 16 15 19 19 H 1.08001 * 120.00101 * 179.69323 * 18 17 16 20 20 C 1.38986 * 119.99804 * 359.41384 * 18 17 16 21 21 N 1.31301 * 119.99937 * 0.27930 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 180.27346 * 20 18 17 23 23 H 1.48503 * 109.47007 * 90.00269 * 22 20 18 24 24 H 1.48501 * 109.47065 * 210.00511 * 22 20 18 25 25 H 1.48498 * 109.47238 * 330.00374 * 22 20 18 26 26 C 1.35669 * 126.08519 * 139.53076 * 14 13 11 27 27 H 1.09000 * 109.46825 * 62.65920 * 1 2 3 28 28 H 1.08997 * 109.46615 * 182.65800 * 1 2 3 29 29 H 1.08996 * 109.46900 * 302.65874 * 1 2 3 30 30 H 1.09005 * 109.46886 * 239.99903 * 2 1 3 31 31 H 1.09002 * 109.47156 * 120.00469 * 2 1 3 32 32 H 1.09002 * 109.89012 * 242.66668 * 4 3 2 33 33 H 1.09010 * 109.88702 * 3.69204 * 4 3 2 34 34 H 1.09001 * 110.70938 * 140.66928 * 5 4 3 35 35 H 1.08997 * 110.70977 * 263.90087 * 5 4 3 36 36 H 1.08995 * 110.98807 * 206.25551 * 6 5 4 37 37 H 1.09000 * 110.99308 * 82.43714 * 6 5 4 38 38 H 1.08999 * 109.46963 * 177.13747 * 9 7 3 39 39 H 1.08999 * 109.47396 * 57.13350 * 9 7 3 40 40 H 0.96994 * 119.99771 * 353.45379 * 10 9 7 41 41 H 0.97003 * 120.00493 * 4.63832 * 13 11 10 42 42 H 1.07995 * 125.80496 * 359.97438 * 15 14 13 43 43 H 0.97003 * 119.99607 * 180.02562 * 21 20 18 44 44 H 1.07999 * 126.24352 * 0.04064 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4803 2.1361 1.1483 5 6 2.6844 2.6845 1.9423 6 6 3.8228 2.6946 0.8883 7 6 3.4963 1.4249 0.0630 8 1 3.8788 0.5358 0.5642 9 6 4.0867 1.5377 -1.3439 10 7 3.7310 0.3468 -2.1196 11 6 4.0305 0.2834 -3.4321 12 16 4.8258 1.5946 -4.1931 13 7 3.7028 -0.8119 -4.1458 14 6 4.1007 -0.9201 -5.4901 15 6 4.0923 0.1151 -6.4423 16 7 4.5356 -0.3640 -7.5771 17 7 4.8350 -1.7205 -7.3977 18 6 5.3227 -2.5745 -8.3561 19 1 5.5245 -3.6060 -8.1079 20 6 5.5511 -2.1128 -9.6469 21 7 5.3057 -0.8587 -9.9486 22 14 6.2073 -3.2764 -10.9526 23 1 5.0704 -3.9264 -11.6528 24 1 7.0208 -2.5127 -11.9325 25 1 7.0523 -4.3150 -10.3105 26 6 4.5614 -2.0414 -6.0994 27 1 -0.3633 0.4720 -0.9129 28 1 -0.3632 -1.0266 0.0477 29 1 -0.3633 0.5545 0.8652 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.8626 2.9615 0.7943 33 1 0.8876 1.4737 1.7793 34 1 2.4823 3.6938 2.3009 35 1 2.9330 2.0224 2.7717 36 1 4.7985 2.6092 1.3665 37 1 3.7713 3.5883 0.2665 38 1 5.1717 1.6171 -1.2772 39 1 3.6869 2.4244 -1.8357 40 1 3.2800 -0.3959 -1.6886 41 1 3.1925 -1.5257 -3.7322 42 1 3.7778 1.1331 -6.2661 43 1 5.4648 -0.5366 -10.8497 44 1 4.6882 -3.0110 -5.6409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145466718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:17 Heat of formation + Delta-G solvation = 115.091622 kcal Electronic energy + Delta-G solvation = -24671.824738 eV Core-core repulsion = 21173.633514 eV Total energy + Delta-G solvation = -3498.191224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.05018 -39.60098 -37.83897 -34.87607 -33.85328 -33.23617 -30.59300 -30.12870 -28.97684 -27.75006 -25.63268 -24.69381 -23.74835 -22.70213 -21.15483 -20.61338 -20.52911 -19.70251 -18.15178 -17.43604 -17.03760 -16.34113 -15.83009 -15.43348 -14.97223 -14.75271 -14.73479 -14.40768 -13.92577 -13.75220 -13.51339 -13.41706 -13.03944 -12.94724 -12.61267 -12.09272 -11.96216 -11.69448 -11.61416 -11.55600 -11.44839 -11.33383 -11.21444 -11.11014 -11.03570 -10.87496 -10.51612 -10.42788 -9.62493 -9.12580 -8.69869 -8.67108 -8.08216 -7.35207 -6.82382 -6.54080 -6.41091 -4.21416 1.94803 2.55587 2.97913 3.05695 3.11721 3.14998 3.47791 3.59779 3.80211 4.02379 4.21159 4.29945 4.42217 4.55280 4.65400 4.79850 4.83288 4.87698 4.90987 5.04309 5.08227 5.11489 5.28347 5.40473 5.44832 5.47027 5.60575 5.61960 5.72899 5.83865 5.87196 5.98010 6.24274 6.31626 6.52648 6.60152 6.70694 6.73654 6.96503 7.18874 7.27622 7.51438 7.88528 7.92734 8.29846 8.71751 9.38093 9.69384 10.41476 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002448 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.522036 B =11436.302886 C =11925.353615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 N -0.522 5.522 4 C 0.040 3.960 5 C -0.142 4.142 6 C -0.118 4.118 7 C 0.056 3.944 8 H 0.059 0.941 9 C 0.148 3.852 10 N -0.695 5.695 11 C 0.552 3.448 12 S -0.647 6.647 13 N -0.572 5.572 14 C -0.087 4.087 15 C 0.030 3.970 16 N -0.264 5.264 17 N -0.141 5.141 18 C -0.324 4.324 19 H 0.116 0.884 20 C 0.047 3.953 21 N -0.765 5.765 22 Si 0.934 3.066 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.264 1.264 26 C -0.063 4.063 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.385 0.615 41 H 0.389 0.611 42 H 0.175 0.825 43 H 0.276 0.724 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 0.242 22.952 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.083 4.083 3 N -0.247 5.247 4 C -0.088 4.088 5 C -0.180 4.180 6 C -0.157 4.157 7 C -0.053 4.053 8 H 0.077 0.923 9 C 0.023 3.977 10 N -0.329 5.329 11 C 0.192 3.808 12 S -0.520 6.520 13 N -0.191 5.191 14 C -0.194 4.194 15 C -0.149 4.149 16 N -0.093 5.093 17 N 0.095 4.905 18 C -0.456 4.456 19 H 0.133 0.867 20 C -0.170 4.170 21 N -0.390 5.390 22 Si 0.758 3.242 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.188 1.188 26 C -0.216 4.216 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.224 0.776 41 H 0.224 0.776 42 H 0.192 0.808 43 H 0.086 0.914 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.838 1.830 20.455 21.645 hybrid contribution -0.501 -2.619 1.961 3.310 sum -7.339 -0.789 22.416 23.600 Atomic orbital electron populations 1.21884 0.94387 1.01878 1.02933 1.22340 0.96592 0.89366 1.00036 1.63600 1.06275 1.12742 1.42083 1.22873 0.96989 0.98183 0.90712 1.22786 0.95398 1.01954 0.97904 1.22649 0.98689 0.97600 0.96751 1.22940 0.87954 0.98708 0.95687 0.92324 1.21593 0.99937 0.87913 0.88208 1.44949 1.60722 1.20896 1.06372 1.22198 0.84350 0.90870 0.83360 1.93204 1.56827 1.27625 1.74383 1.41407 1.50139 1.17030 1.10550 1.16830 1.23799 0.96718 0.82028 1.24103 1.02229 0.99308 0.89268 1.78353 1.22777 0.88628 1.19509 1.44596 1.34260 1.06700 1.04934 1.19865 1.43903 0.92714 0.89110 0.86675 1.25648 0.96167 0.96619 0.98611 1.70223 1.34996 1.13474 1.20357 0.85834 0.79086 0.79546 0.79720 1.19602 1.20019 1.18833 1.21311 1.13826 0.98554 0.87953 0.91506 0.92133 0.92314 0.91324 0.94775 0.90266 0.92371 0.90408 0.91600 0.90289 0.89595 0.90088 0.88584 0.77632 0.77570 0.80792 0.91373 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.77 37.16 0.36 -0.70 16 2 C 0.05 0.34 5.24 -3.82 -0.02 0.32 16 3 N -0.52 -4.42 4.86 -223.38 -1.09 -5.51 16 4 C 0.04 0.28 6.11 -2.84 -0.02 0.26 16 5 C -0.14 -0.84 6.94 -24.91 -0.17 -1.01 16 6 C -0.12 -0.82 6.50 -24.59 -0.16 -0.98 16 7 C 0.06 0.46 2.66 -66.19 -0.18 0.29 16 8 H 0.06 0.46 7.73 -51.93 -0.40 0.05 16 9 C 0.15 1.70 4.90 -4.04 -0.02 1.68 16 10 N -0.69 -8.72 5.34 -62.03 -0.33 -9.05 16 11 C 0.55 9.68 7.93 -86.92 -0.69 8.99 16 12 S -0.65 -14.56 24.99 -107.50 -2.69 -17.24 16 13 N -0.57 -10.03 5.47 -11.54 -0.06 -10.10 16 14 C -0.09 -1.98 6.36 -83.83 -0.53 -2.51 16 15 C 0.03 0.80 10.04 -17.03 -0.17 0.62 16 16 N -0.26 -7.70 10.40 30.80 0.32 -7.38 16 17 N -0.14 -3.86 3.74 -11.41 -0.04 -3.90 16 18 C -0.32 -8.58 10.25 -14.82 -0.15 -8.74 16 19 H 0.12 2.73 7.83 -52.49 -0.41 2.31 16 20 C 0.05 1.23 5.50 -17.50 -0.10 1.13 16 21 N -0.76 -21.50 11.81 55.50 0.66 -20.85 16 22 Si 0.93 19.03 29.55 -169.99 -5.02 14.00 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.06 -1.47 11.49 -16.39 -0.19 -1.66 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 6.21 -51.93 -0.32 0.05 16 30 H 0.07 0.53 5.38 -51.93 -0.28 0.25 16 31 H 0.03 0.23 8.03 -51.93 -0.42 -0.19 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.36 6.11 -51.92 -0.32 0.04 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.65 8.06 -51.93 -0.42 0.24 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.10 1.32 7.72 -51.93 -0.40 0.92 16 40 H 0.39 3.79 5.60 -40.82 -0.23 3.56 16 41 H 0.39 5.23 8.84 -40.82 -0.36 4.86 16 42 H 0.18 4.57 6.40 -51.66 -0.33 4.24 16 43 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -34.33 362.44 -11.23 -45.56 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.40 Total: 11.31 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.03 Total: -2.31 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.55 Total: -56.78 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 16 Polarization: -14.56 SS G_CDS: -2.69 Total: -17.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.33 -11.23 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145466718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.653 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds