Wall clock time and date at job start Tue Mar 31 2020 14:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47313 * 2 1 4 4 C 1.47439 * 110.99969 * 56.53427 * 3 2 1 5 5 C 1.54312 * 107.23430 * 123.25772 * 4 3 2 6 6 C 1.55144 * 103.01867 * 22.28791 * 5 4 3 7 7 C 1.47840 * 111.00336 * 177.38229 * 3 2 1 8 8 H 1.09001 * 110.36890 * 332.57344 * 7 3 2 9 9 C 1.52994 * 110.37738 * 94.80648 * 7 3 2 10 10 N 1.46507 * 109.47102 * 297.13201 * 9 7 3 11 11 C 1.34772 * 119.99890 * 173.44565 * 10 9 7 12 12 S 1.71195 * 120.00214 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.40610 * 120.00057 * 184.63480 * 13 11 10 15 15 C 1.40659 * 126.07817 * 319.55521 * 14 13 11 16 16 N 1.30910 * 108.38651 * 179.73249 * 15 14 13 17 17 N 1.40067 * 108.40834 * 0.38288 * 16 15 14 18 18 C 1.37319 * 126.07354 * 179.87465 * 17 16 15 19 19 H 1.08001 * 120.00101 * 179.69323 * 18 17 16 20 20 C 1.38986 * 119.99804 * 359.41384 * 18 17 16 21 21 N 1.31301 * 119.99937 * 0.27930 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 180.27346 * 20 18 17 23 23 H 1.48503 * 109.47007 * 90.00269 * 22 20 18 24 24 H 1.48501 * 109.47065 * 210.00511 * 22 20 18 25 25 H 1.48498 * 109.47238 * 330.00374 * 22 20 18 26 26 C 1.35669 * 126.08519 * 139.53076 * 14 13 11 27 27 H 1.09000 * 109.46825 * 62.65920 * 1 2 3 28 28 H 1.08997 * 109.46615 * 182.65800 * 1 2 3 29 29 H 1.08996 * 109.46900 * 302.65874 * 1 2 3 30 30 H 1.09005 * 109.46886 * 239.99903 * 2 1 3 31 31 H 1.09002 * 109.47156 * 120.00469 * 2 1 3 32 32 H 1.09002 * 109.89012 * 242.66668 * 4 3 2 33 33 H 1.09010 * 109.88702 * 3.69204 * 4 3 2 34 34 H 1.09001 * 110.70938 * 140.66928 * 5 4 3 35 35 H 1.08997 * 110.70977 * 263.90087 * 5 4 3 36 36 H 1.08995 * 110.98807 * 206.25551 * 6 5 4 37 37 H 1.09000 * 110.99308 * 82.43714 * 6 5 4 38 38 H 1.08999 * 109.46963 * 177.13747 * 9 7 3 39 39 H 1.08999 * 109.47396 * 57.13350 * 9 7 3 40 40 H 0.96994 * 119.99771 * 353.45379 * 10 9 7 41 41 H 0.97003 * 120.00493 * 4.63832 * 13 11 10 42 42 H 1.07995 * 125.80496 * 359.97438 * 15 14 13 43 43 H 0.97003 * 119.99607 * 180.02562 * 21 20 18 44 44 H 1.07999 * 126.24352 * 0.04064 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4803 2.1361 1.1483 5 6 2.6844 2.6845 1.9423 6 6 3.8228 2.6946 0.8883 7 6 3.4963 1.4249 0.0630 8 1 3.8788 0.5358 0.5642 9 6 4.0867 1.5377 -1.3439 10 7 3.7310 0.3468 -2.1196 11 6 4.0305 0.2834 -3.4321 12 16 4.8258 1.5946 -4.1931 13 7 3.7028 -0.8119 -4.1458 14 6 4.1007 -0.9201 -5.4901 15 6 4.0923 0.1151 -6.4423 16 7 4.5356 -0.3640 -7.5771 17 7 4.8350 -1.7205 -7.3977 18 6 5.3227 -2.5745 -8.3561 19 1 5.5245 -3.6060 -8.1079 20 6 5.5511 -2.1128 -9.6469 21 7 5.3057 -0.8587 -9.9486 22 14 6.2073 -3.2764 -10.9526 23 1 5.0704 -3.9264 -11.6528 24 1 7.0208 -2.5127 -11.9325 25 1 7.0523 -4.3150 -10.3105 26 6 4.5614 -2.0414 -6.0994 27 1 -0.3633 0.4720 -0.9129 28 1 -0.3632 -1.0266 0.0477 29 1 -0.3633 0.5545 0.8652 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.8626 2.9615 0.7943 33 1 0.8876 1.4737 1.7793 34 1 2.4823 3.6938 2.3009 35 1 2.9330 2.0224 2.7717 36 1 4.7985 2.6092 1.3665 37 1 3.7713 3.5883 0.2665 38 1 5.1717 1.6171 -1.2772 39 1 3.6869 2.4244 -1.8357 40 1 3.2800 -0.3959 -1.6886 41 1 3.1925 -1.5257 -3.7322 42 1 3.7778 1.1331 -6.2661 43 1 5.4648 -0.5366 -10.8497 44 1 4.6882 -3.0110 -5.6409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145466718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:16 Heat of formation + Delta-G solvation = 91.448012 kcal Electronic energy + Delta-G solvation = -24672.850002 eV Core-core repulsion = 21173.633514 eV Total energy + Delta-G solvation = -3499.216488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58424 -40.72943 -39.20509 -36.30190 -35.08749 -34.40600 -32.25589 -31.40219 -29.62614 -29.38859 -26.98342 -26.17674 -25.03949 -23.56777 -22.52113 -21.90735 -21.54880 -21.06584 -19.73090 -19.02797 -17.94585 -17.65145 -17.32991 -16.71036 -16.29167 -15.95448 -15.83540 -15.45108 -15.29996 -15.10488 -14.86888 -14.55512 -14.11145 -14.01672 -13.55782 -13.47536 -13.20347 -12.89214 -12.81061 -12.72512 -12.54040 -12.28355 -12.13318 -12.09791 -12.06859 -12.00901 -11.77360 -11.56285 -11.33389 -10.87855 -10.45343 -10.08438 -9.29771 -9.07563 -8.66648 -8.44066 -8.22881 -6.21876 0.41537 1.04449 1.33006 1.40741 1.57680 1.62979 1.82354 2.15971 2.46529 2.62221 2.85932 3.03300 3.11677 3.60680 3.69783 3.94509 4.08361 4.19889 4.24424 4.28770 4.43509 4.51567 4.55475 4.60677 4.63770 4.71204 4.83286 4.91186 4.98358 5.01195 5.02621 5.03241 5.09437 5.14672 5.24362 5.30691 5.32556 5.37538 5.62188 5.94635 5.98127 6.04799 6.12255 6.38051 6.54143 6.80416 7.47095 7.70797 8.54616 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002448 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.522036 B =11436.302886 C =11925.353615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 N -0.543 5.543 4 C 0.039 3.961 5 C -0.134 4.134 6 C -0.119 4.119 7 C 0.065 3.935 8 H 0.076 0.924 9 C 0.148 3.852 10 N -0.659 5.659 11 C 0.579 3.421 12 S -0.742 6.742 13 N -0.561 5.561 14 C -0.069 4.069 15 C 0.012 3.988 16 N -0.315 5.315 17 N -0.168 5.168 18 C -0.355 4.355 19 H 0.140 0.860 20 C -0.006 4.006 21 N -0.822 5.822 22 Si 1.018 2.982 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.245 1.245 26 C -0.055 4.055 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.407 0.593 41 H 0.416 0.584 42 H 0.164 0.836 43 H 0.276 0.724 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -2.480 25.807 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 N -0.268 5.268 4 C -0.088 4.088 5 C -0.173 4.173 6 C -0.157 4.157 7 C -0.044 4.044 8 H 0.094 0.906 9 C 0.024 3.976 10 N -0.292 5.292 11 C 0.215 3.785 12 S -0.617 6.617 13 N -0.184 5.184 14 C -0.176 4.176 15 C -0.167 4.167 16 N -0.144 5.144 17 N 0.066 4.934 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.218 4.218 21 N -0.449 5.449 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.169 1.169 26 C -0.208 4.208 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.249 0.751 41 H 0.256 0.744 42 H 0.181 0.819 43 H 0.086 0.914 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.281 -0.927 23.415 24.539 hybrid contribution -0.491 -1.726 1.352 2.247 sum -7.772 -2.652 24.768 26.094 Atomic orbital electron populations 1.21860 0.94126 1.02524 1.02290 1.22382 0.96837 0.88843 1.00442 1.63517 1.06218 1.13661 1.43410 1.22879 0.97433 0.98027 0.90440 1.22762 0.94141 1.02735 0.97619 1.22667 0.99957 0.96319 0.96788 1.22840 0.88087 1.00185 0.93283 0.90623 1.21713 0.99939 0.86265 0.89722 1.44952 1.58112 1.21810 1.04352 1.21586 0.83250 0.89054 0.84650 1.93502 1.60798 1.31305 1.76116 1.41027 1.50657 1.17833 1.08868 1.16746 1.21985 0.95336 0.83566 1.24093 1.02933 0.99655 0.90026 1.78251 1.24395 0.90431 1.21305 1.44853 1.35773 1.06248 1.06492 1.20588 1.44495 0.93761 0.89700 0.84221 1.26871 0.95728 0.98221 1.00944 1.70408 1.37384 1.16143 1.20990 0.84610 0.78534 0.77130 0.76036 1.18669 1.20390 1.16856 1.22035 1.11676 1.00247 0.86856 0.93332 0.90985 0.91656 0.91770 0.93229 0.91140 0.91198 0.89611 0.90361 0.88968 0.90834 0.90449 0.90934 0.75093 0.74384 0.81859 0.91420 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.77 71.98 0.70 -1.02 16 2 C 0.04 0.51 5.24 86.30 0.45 0.96 16 3 N -0.54 -7.92 4.86 -860.66 -4.19 -12.11 16 4 C 0.04 0.45 6.11 86.64 0.53 0.98 16 5 C -0.13 -1.21 6.94 31.77 0.22 -0.99 16 6 C -0.12 -1.40 6.50 31.98 0.21 -1.19 16 7 C 0.06 0.92 2.66 45.38 0.12 1.04 16 8 H 0.08 0.87 7.73 -2.39 -0.02 0.85 16 9 C 0.15 3.21 4.90 86.38 0.42 3.64 16 10 N -0.66 -15.15 5.34 -350.17 -1.87 -17.02 16 11 C 0.58 19.67 7.93 179.06 1.42 21.09 16 12 S -0.74 -34.46 24.99 -56.49 -1.41 -35.87 16 13 N -0.56 -18.55 5.47 -190.41 -1.04 -19.59 16 14 C -0.07 -3.10 6.36 37.73 0.24 -2.86 16 15 C 0.01 0.66 10.04 85.42 0.86 1.52 16 16 N -0.31 -19.08 10.40 -56.46 -0.59 -19.66 16 17 N -0.17 -9.30 3.74 -190.01 -0.71 -10.01 16 18 C -0.35 -18.82 10.25 84.01 0.86 -17.96 16 19 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 20 C -0.01 -0.30 5.50 84.95 0.47 0.17 16 21 N -0.82 -48.09 11.81 21.66 0.26 -47.83 16 22 Si 1.02 39.01 29.55 68.60 2.03 41.03 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 26 C -0.06 -2.52 11.49 83.37 0.96 -1.56 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 6.21 -2.39 -0.01 0.64 16 30 H 0.06 0.77 5.38 -2.38 -0.01 0.76 16 31 H 0.05 0.46 8.03 -2.39 -0.02 0.44 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.65 6.11 -2.38 -0.01 0.63 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 2.02 7.72 -2.39 -0.02 2.00 16 40 H 0.41 6.57 5.60 -92.71 -0.52 6.05 16 41 H 0.42 9.66 8.84 -92.71 -0.82 8.84 16 42 H 0.16 9.08 6.40 -3.44 -0.02 9.06 16 43 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.19 6.64 8.06 -2.91 -0.02 6.62 16 Total: -1.00 -80.06 362.44 -0.37 -80.43 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.31 Total: 36.83 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 7.46 Total: 3.81 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -8.14 Total: -126.23 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 16 Polarization: -34.46 SS G_CDS: -1.41 Total: -35.87 kcal Total: -80.06 -0.37 -80.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145466718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.877 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds