Wall clock time and date at job start Tue Mar 31 2020 13:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47417 * 2 1 4 4 H 1.08996 * 109.47179 * 54.99759 * 3 2 1 5 5 C 1.50703 * 109.47258 * 175.00265 * 3 2 1 6 6 H 1.08002 * 119.99715 * 120.00051 * 5 3 2 7 7 C 1.37871 * 119.99940 * 299.99995 * 5 3 2 8 8 N 1.31513 * 120.00150 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 120.00005 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.46828 * 90.00184 * 9 7 5 11 11 H 1.48500 * 109.46843 * 210.00133 * 9 7 5 12 12 H 1.48496 * 109.47027 * 330.00331 * 9 7 5 13 13 N 1.46500 * 109.46992 * 295.00507 * 3 2 1 14 14 C 1.34771 * 120.00389 * 84.99756 * 13 3 2 15 15 O 1.21594 * 120.00002 * 359.97438 * 14 13 3 16 16 N 1.34779 * 120.00422 * 179.97438 * 14 13 3 17 17 C 1.40181 * 120.00289 * 185.30458 * 16 14 13 18 18 C 1.39361 * 120.42503 * 32.62644 * 17 16 14 19 19 C 1.38327 * 118.42822 * 179.75074 * 18 17 16 20 20 C 1.38906 * 119.18252 * 0.53262 * 19 18 17 21 21 O 1.35758 * 119.60607 * 179.72848 * 20 19 18 22 22 C 1.42897 * 116.99329 * 179.72966 * 21 20 19 23 23 C 1.53002 * 109.46746 * 179.97438 * 22 21 20 24 24 O 1.42904 * 109.47022 * 65.00168 * 23 22 21 25 25 C 1.42901 * 113.99895 * 180.02562 * 24 23 22 26 26 N 1.32205 * 120.77759 * 359.45682 * 20 19 18 27 27 C 1.31947 * 121.71943 * 0.26896 * 26 20 19 28 28 H 1.09004 * 109.46673 * 300.00049 * 1 2 3 29 29 H 1.08996 * 109.47424 * 59.99762 * 1 2 3 30 30 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46673 * 239.99951 * 2 1 3 32 32 H 1.08996 * 109.47424 * 120.00238 * 2 1 3 33 33 H 0.96999 * 120.00350 * 179.97438 * 8 7 5 34 34 H 0.97011 * 120.00029 * 264.99650 * 13 3 2 35 35 H 0.97002 * 119.99752 * 5.30211 * 16 14 13 36 36 H 1.08006 * 120.78468 * 0.04791 * 18 17 16 37 37 H 1.08004 * 120.41147 * 180.26112 * 19 18 17 38 38 H 1.08999 * 109.47394 * 60.00375 * 22 21 20 39 39 H 1.09001 * 109.47317 * 299.99948 * 22 21 20 40 40 H 1.09004 * 109.47101 * 184.99634 * 23 22 21 41 41 H 1.08998 * 109.47405 * 304.99937 * 23 22 21 42 42 H 1.08999 * 109.47654 * 59.99691 * 25 24 23 43 43 H 1.09001 * 109.47070 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.47040 * 299.99300 * 25 24 23 45 45 H 1.08002 * 119.63315 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 5.4540 0.8802 1.3361 9 14 3.0964 0.1100 2.5706 10 1 2.8745 -1.3260 2.2645 11 1 3.7943 0.2359 3.8754 12 1 1.7882 0.8093 2.6394 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4319 16 7 0.0787 3.2674 -2.5183 17 6 -1.1411 3.9530 -2.6021 18 6 -1.6622 4.6054 -1.4863 19 6 -2.8663 5.2735 -1.6168 20 6 -3.5173 5.2629 -2.8438 21 8 -4.7023 5.9112 -2.9800 22 6 -5.3204 5.8691 -4.2677 23 6 -6.6365 6.6483 -4.2273 24 8 -6.3649 8.0299 -3.9832 25 6 -7.5332 8.8506 -3.9256 26 7 -2.9940 4.6333 -3.8819 27 6 -1.8450 3.9903 -3.7961 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8771 0.4824 2.1130 34 1 2.2719 2.1231 -1.9979 35 1 0.6663 3.2271 -3.2890 36 1 -1.1358 4.5937 -0.5433 37 1 -3.2972 5.7934 -0.7739 38 1 -5.5202 4.8331 -4.5412 39 1 -4.6547 6.3177 -5.0051 40 1 -7.1509 6.5424 -5.1824 41 1 -7.2670 6.2555 -3.4296 42 1 -8.1820 8.5035 -3.1214 43 1 -7.2424 9.8840 -3.7368 44 1 -8.0666 8.7905 -4.8743 45 1 -1.4481 3.4877 -4.6658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157139865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:15 Heat of formation + Delta-G solvation = -64.812192 kcal Electronic energy + Delta-G solvation = -26807.650545 eV Core-core repulsion = 22826.612483 eV Total energy + Delta-G solvation = -3981.038061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89495 -39.76013 -38.52337 -37.52967 -35.77167 -34.35111 -32.57710 -32.20888 -31.60121 -30.84375 -28.81414 -27.33597 -26.68854 -24.33402 -23.38130 -22.64798 -22.46090 -21.02226 -19.90175 -18.79987 -18.36082 -17.46265 -17.17524 -16.86486 -16.28565 -16.02227 -15.69726 -15.55893 -15.30756 -14.90162 -14.46835 -14.32198 -13.80316 -13.56944 -13.47568 -13.24436 -13.11687 -12.74606 -12.66531 -12.47698 -12.03025 -11.93348 -11.83712 -11.69195 -11.22390 -11.11838 -10.93077 -10.67422 -10.42111 -10.11493 -9.97909 -9.89821 -9.75215 -9.46674 -9.29905 -9.23741 -8.79818 -8.21962 -7.76535 -6.24335 -4.27322 1.12063 1.31973 2.83054 3.05913 3.21646 3.34019 3.36515 3.38735 3.49808 3.90040 4.25265 4.28648 4.59518 4.64336 4.78079 4.87656 4.90212 4.97402 4.99919 5.04907 5.09467 5.18362 5.28944 5.32420 5.42352 5.62172 5.77884 5.95412 6.01244 6.08906 6.15419 6.29959 6.59716 6.67262 6.71535 6.75742 6.79537 6.91280 7.07206 7.22460 7.25938 7.42403 7.47474 7.79574 8.21977 8.54630 8.73963 9.01050 9.36217 10.87546 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033580 B = 0.002139 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.635124 B =13089.525766 C =13208.580681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.259 3.741 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.709 5.709 14 C 0.695 3.305 15 O -0.579 6.579 16 N -0.688 5.688 17 C 0.099 3.901 18 C -0.044 4.044 19 C -0.165 4.165 20 C 0.294 3.706 21 O -0.301 6.301 22 C 0.075 3.925 23 C 0.060 3.940 24 O -0.385 6.385 25 C 0.031 3.969 26 N -0.523 5.523 27 C 0.103 3.897 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.406 0.594 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 9.687 -12.920 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.360 5.360 14 C 0.395 3.605 15 O -0.457 6.457 16 N -0.337 5.337 17 C 0.001 3.999 18 C -0.072 4.072 19 C -0.186 4.186 20 C 0.114 3.886 21 O -0.208 6.208 22 C -0.001 4.001 23 C -0.016 4.016 24 O -0.304 6.304 25 C -0.066 4.066 26 N -0.246 5.246 27 C -0.056 4.056 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.241 0.759 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.770 9.793 -12.455 26.925 hybrid contribution 0.372 -0.786 0.490 0.998 sum -21.398 9.007 -11.965 26.118 Atomic orbital electron populations 1.21851 0.96840 0.98928 1.02308 1.22314 0.94439 1.00010 1.01112 1.19087 0.95470 0.88216 0.81667 0.93161 1.21022 0.88510 1.39955 1.07928 0.90174 1.24818 0.94879 0.95114 0.97657 1.69859 1.08685 1.44375 1.29829 0.86904 0.80971 0.79968 0.80904 1.20237 1.22144 1.18395 1.45451 1.13190 1.58591 1.18805 1.16068 0.83430 0.78603 0.82376 1.90901 1.51777 1.64692 1.38364 1.42663 1.19804 1.56101 1.15168 1.18379 0.88739 0.96962 0.95839 1.21582 0.94574 0.91360 0.99644 1.20989 0.96426 1.04487 0.96722 1.19696 0.86575 0.92057 0.90257 1.86282 1.31517 1.69340 1.33689 1.22586 0.93178 0.99977 0.84363 1.22658 0.96049 0.82196 1.00718 1.87981 1.31108 1.18007 1.93278 1.22758 0.88286 0.95601 0.99935 1.67207 1.13598 1.12732 1.31107 1.22053 0.89250 0.97463 0.96822 0.92853 0.92961 0.95107 0.92319 0.92729 0.92230 0.77368 0.75903 0.82531 0.84010 0.90141 0.90797 0.91148 0.92192 0.93945 0.89500 0.94116 0.82407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.16 0.32 -2.50 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.16 16 3 C 0.26 5.89 1.83 -69.08 -0.13 5.77 16 4 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 5 C -0.54 -14.01 9.31 -34.44 -0.32 -14.33 16 6 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.89 13.96 55.43 0.77 -25.11 16 9 Si 0.88 21.33 24.41 -169.99 -4.15 17.18 16 10 H -0.28 -6.47 6.83 56.52 0.39 -6.09 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 13 N -0.71 -13.11 5.03 -59.81 -0.30 -13.41 16 14 C 0.69 12.23 6.90 -86.92 -0.60 11.63 16 15 O -0.58 -11.97 11.16 5.28 0.06 -11.91 16 16 N -0.69 -9.16 5.37 -14.10 -0.08 -9.24 16 17 C 0.10 1.35 6.31 -83.47 -0.53 0.82 16 18 C -0.04 -0.64 8.76 -39.13 -0.34 -0.98 16 19 C -0.17 -2.21 10.03 -39.30 -0.39 -2.60 16 20 C 0.29 3.98 7.49 -17.14 -0.13 3.85 16 21 O -0.30 -3.85 10.08 -23.84 -0.24 -4.09 16 22 C 0.07 0.73 5.69 37.16 0.21 0.94 16 23 C 0.06 0.48 6.32 37.16 0.23 0.71 16 24 O -0.38 -3.84 10.67 -40.09 -0.43 -4.27 16 25 C 0.03 0.19 11.01 101.05 1.11 1.31 16 26 N -0.52 -6.81 9.20 -13.18 -0.12 -6.93 16 27 C 0.10 1.23 11.11 -17.35 -0.19 1.03 16 28 H 0.05 1.12 7.84 -51.93 -0.41 0.72 16 29 H 0.05 1.03 5.64 -51.93 -0.29 0.73 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.39 6.29 8.56 -40.82 -0.35 5.94 16 35 H 0.41 3.99 8.84 -40.82 -0.36 3.62 16 36 H 0.16 2.51 6.47 -52.48 -0.34 2.17 16 37 H 0.14 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -32.57 366.99 -6.45 -39.03 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.51 Total: 8.64 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.99 Total: 4.57 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.61 Total: -20.26 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.15 Total: 17.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.57 -6.45 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157139865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.784 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds