Wall clock time and date at job start Tue Mar 31 2020 13:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47417 * 2 1 4 4 H 1.08996 * 109.47179 * 54.99759 * 3 2 1 5 5 C 1.50703 * 109.47258 * 175.00265 * 3 2 1 6 6 H 1.08002 * 119.99715 * 120.00051 * 5 3 2 7 7 C 1.37871 * 119.99940 * 299.99995 * 5 3 2 8 8 N 1.31513 * 120.00150 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 120.00005 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.46828 * 90.00184 * 9 7 5 11 11 H 1.48500 * 109.46843 * 210.00133 * 9 7 5 12 12 H 1.48496 * 109.47027 * 330.00331 * 9 7 5 13 13 N 1.46500 * 109.46992 * 295.00507 * 3 2 1 14 14 C 1.34771 * 120.00389 * 84.99756 * 13 3 2 15 15 O 1.21594 * 120.00002 * 359.97438 * 14 13 3 16 16 N 1.34779 * 120.00422 * 179.97438 * 14 13 3 17 17 C 1.40181 * 120.00289 * 185.30458 * 16 14 13 18 18 C 1.39361 * 120.42503 * 32.62644 * 17 16 14 19 19 C 1.38327 * 118.42822 * 179.75074 * 18 17 16 20 20 C 1.38906 * 119.18252 * 0.53262 * 19 18 17 21 21 O 1.35758 * 119.60607 * 179.72848 * 20 19 18 22 22 C 1.42897 * 116.99329 * 179.72966 * 21 20 19 23 23 C 1.53002 * 109.46746 * 179.97438 * 22 21 20 24 24 O 1.42904 * 109.47022 * 65.00168 * 23 22 21 25 25 C 1.42901 * 113.99895 * 180.02562 * 24 23 22 26 26 N 1.32205 * 120.77759 * 359.45682 * 20 19 18 27 27 C 1.31947 * 121.71943 * 0.26896 * 26 20 19 28 28 H 1.09004 * 109.46673 * 300.00049 * 1 2 3 29 29 H 1.08996 * 109.47424 * 59.99762 * 1 2 3 30 30 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46673 * 239.99951 * 2 1 3 32 32 H 1.08996 * 109.47424 * 120.00238 * 2 1 3 33 33 H 0.96999 * 120.00350 * 179.97438 * 8 7 5 34 34 H 0.97011 * 120.00029 * 264.99650 * 13 3 2 35 35 H 0.97002 * 119.99752 * 5.30211 * 16 14 13 36 36 H 1.08006 * 120.78468 * 0.04791 * 18 17 16 37 37 H 1.08004 * 120.41147 * 180.26112 * 19 18 17 38 38 H 1.08999 * 109.47394 * 60.00375 * 22 21 20 39 39 H 1.09001 * 109.47317 * 299.99948 * 22 21 20 40 40 H 1.09004 * 109.47101 * 184.99634 * 23 22 21 41 41 H 1.08998 * 109.47405 * 304.99937 * 23 22 21 42 42 H 1.08999 * 109.47654 * 59.99691 * 25 24 23 43 43 H 1.09001 * 109.47070 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.47040 * 299.99300 * 25 24 23 45 45 H 1.08002 * 119.63315 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 5.4540 0.8802 1.3361 9 14 3.0964 0.1100 2.5706 10 1 2.8745 -1.3260 2.2645 11 1 3.7943 0.2359 3.8754 12 1 1.7882 0.8093 2.6394 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4319 16 7 0.0787 3.2674 -2.5183 17 6 -1.1411 3.9530 -2.6021 18 6 -1.6622 4.6054 -1.4863 19 6 -2.8663 5.2735 -1.6168 20 6 -3.5173 5.2629 -2.8438 21 8 -4.7023 5.9112 -2.9800 22 6 -5.3204 5.8691 -4.2677 23 6 -6.6365 6.6483 -4.2273 24 8 -6.3649 8.0299 -3.9832 25 6 -7.5332 8.8506 -3.9256 26 7 -2.9940 4.6333 -3.8819 27 6 -1.8450 3.9903 -3.7961 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8771 0.4824 2.1130 34 1 2.2719 2.1231 -1.9979 35 1 0.6663 3.2271 -3.2890 36 1 -1.1358 4.5937 -0.5433 37 1 -3.2972 5.7934 -0.7739 38 1 -5.5202 4.8331 -4.5412 39 1 -4.6547 6.3177 -5.0051 40 1 -7.1509 6.5424 -5.1824 41 1 -7.2670 6.2555 -3.4296 42 1 -8.1820 8.5035 -3.1214 43 1 -7.2424 9.8840 -3.7368 44 1 -8.0666 8.7905 -4.8743 45 1 -1.4481 3.4877 -4.6658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157139865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:15 Heat of formation + Delta-G solvation = -90.900204 kcal Electronic energy + Delta-G solvation = -26808.781806 eV Core-core repulsion = 22826.612483 eV Total energy + Delta-G solvation = -3982.169322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00907 -41.00157 -39.39083 -38.38290 -37.32231 -35.67472 -34.41931 -33.44155 -33.04087 -31.68832 -30.01660 -29.02421 -27.23477 -25.28283 -24.83249 -24.09544 -23.36804 -22.44298 -21.48526 -20.07056 -19.49907 -18.78808 -18.22463 -17.84653 -17.68340 -17.32509 -16.68270 -16.48336 -16.28982 -16.09248 -15.98848 -15.41326 -15.16947 -15.05445 -14.67313 -14.42657 -14.26317 -14.10435 -13.79619 -13.73439 -13.54941 -13.26057 -12.95241 -12.75390 -12.52791 -12.49615 -12.39352 -12.01621 -11.83526 -11.49680 -11.43661 -11.22577 -11.15705 -10.85812 -10.80302 -10.66616 -10.41357 -9.81338 -8.85735 -8.36234 -6.41506 0.10533 0.23720 1.29204 1.37735 1.47025 1.66124 2.07319 2.16148 2.27716 2.79808 2.82823 3.00069 3.28416 3.38810 3.88830 3.94731 4.01007 4.11432 4.19629 4.26972 4.34898 4.42511 4.44941 4.49157 4.54119 4.57512 4.64292 4.69600 4.83070 4.85489 4.87701 5.02236 5.06501 5.14060 5.22142 5.24747 5.42434 5.53180 5.65633 5.66878 5.96925 6.17309 6.29262 6.29803 6.61546 6.78427 7.14918 7.25409 7.63478 8.78688 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033580 B = 0.002139 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.635124 B =13089.525766 C =13208.580681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C 0.268 3.732 4 H 0.025 0.975 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.708 5.708 14 C 0.697 3.303 15 O -0.610 6.610 16 N -0.668 5.668 17 C 0.084 3.916 18 C -0.057 4.057 19 C -0.172 4.172 20 C 0.289 3.711 21 O -0.313 6.313 22 C 0.069 3.931 23 C 0.061 3.939 24 O -0.418 6.418 25 C 0.025 3.975 26 N -0.526 5.526 27 C 0.119 3.881 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.269 0.731 34 H 0.406 0.594 35 H 0.425 0.575 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 9.276 -14.633 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.176 4.176 3 C 0.163 3.837 4 H 0.043 0.957 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.361 5.361 14 C 0.398 3.602 15 O -0.490 6.490 16 N -0.318 5.318 17 C -0.014 4.014 18 C -0.085 4.085 19 C -0.193 4.193 20 C 0.110 3.890 21 O -0.220 6.220 22 C -0.006 4.006 23 C -0.015 4.015 24 O -0.338 6.338 25 C -0.070 4.070 26 N -0.249 5.249 27 C -0.040 4.040 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.241 0.759 35 H 0.264 0.736 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -23.904 9.410 -14.235 29.370 hybrid contribution 0.960 -0.532 0.909 1.425 sum -22.944 8.877 -13.326 27.979 Atomic orbital electron populations 1.21721 0.95276 1.00240 1.01546 1.22228 0.95727 0.98634 1.01055 1.18672 0.92980 0.89298 0.82738 0.95749 1.21265 0.90287 1.38432 1.06930 0.92364 1.25513 0.95686 0.95946 0.99819 1.69968 1.10241 1.46160 1.30823 0.86064 0.79383 0.79961 0.78378 1.18651 1.22304 1.18353 1.45106 1.14090 1.58943 1.17953 1.16068 0.82676 0.78428 0.83059 1.90892 1.52521 1.65701 1.39869 1.42295 1.20093 1.54993 1.14450 1.18489 0.89026 0.97574 0.96331 1.21492 0.95146 0.92423 0.99391 1.21063 0.96220 1.04649 0.97383 1.19841 0.86886 0.91926 0.90330 1.86278 1.31206 1.69103 1.35456 1.22833 0.93760 1.01017 0.82946 1.22769 0.95059 0.81271 1.02419 1.87926 1.33182 1.19082 1.93615 1.22923 0.87562 0.95383 1.01169 1.67319 1.13930 1.12869 1.30821 1.22552 0.88286 0.96049 0.97084 0.94523 0.92825 0.92666 0.91189 0.93884 0.92132 0.75891 0.73649 0.84556 0.83117 0.89055 0.91368 0.88269 0.91729 0.93295 0.89058 0.92391 0.78837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 8.51 71.98 0.61 -4.32 16 2 C -0.14 -5.74 5.11 30.59 0.16 -5.58 16 3 C 0.27 12.11 1.83 44.24 0.08 12.19 16 4 H 0.02 1.25 6.63 -2.39 -0.02 1.23 16 5 C -0.53 -27.97 9.31 25.60 0.24 -27.73 16 6 H 0.06 3.26 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.67 5.45 84.65 0.46 2.13 16 8 N -0.93 -55.08 13.96 21.44 0.30 -54.78 16 9 Si 0.93 44.05 24.41 68.60 1.67 45.72 16 10 H -0.26 -11.58 6.83 99.48 0.68 -10.91 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.26 -12.09 6.53 99.48 0.65 -11.45 16 13 N -0.71 -25.60 5.03 -461.41 -2.32 -27.91 16 14 C 0.70 23.87 6.90 179.06 1.24 25.11 16 15 O -0.61 -25.04 11.16 -4.01 -0.04 -25.08 16 16 N -0.67 -16.57 5.37 -316.77 -1.70 -18.27 16 17 C 0.08 2.14 6.31 38.17 0.24 2.38 16 18 C -0.06 -1.63 8.76 22.56 0.20 -1.44 16 19 C -0.17 -4.55 10.03 22.45 0.23 -4.32 16 20 C 0.29 7.51 7.49 84.80 0.63 8.15 16 21 O -0.31 -7.69 10.08 -86.20 -0.87 -8.56 16 22 C 0.07 1.25 5.69 71.98 0.41 1.66 16 23 C 0.06 0.85 6.32 71.98 0.45 1.30 16 24 O -0.42 -7.81 10.67 -144.34 -1.54 -9.35 16 25 C 0.03 0.28 11.01 113.37 1.25 1.53 16 26 N -0.53 -12.59 9.20 -308.44 -2.84 -15.43 16 27 C 0.12 2.52 11.11 84.77 0.94 3.46 16 28 H 0.04 1.49 7.84 -2.38 -0.02 1.47 16 29 H 0.05 2.00 5.64 -2.39 -0.01 1.98 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.04 1.89 3.22 -2.39 -0.01 1.89 16 33 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.41 12.51 8.56 -92.70 -0.79 11.71 16 35 H 0.42 7.22 8.84 -92.71 -0.82 6.40 16 36 H 0.14 4.50 6.47 -2.91 -0.02 4.48 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -70.61 366.99 -0.87 -71.47 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.67 Total: 27.66 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 7.14 Total: 14.52 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -6.56 Total: -116.39 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.45 Total: -42.99 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Total: -70.61 -0.87 -71.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157139865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.425 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds