Wall clock time and date at job start Tue Mar 31 2020 13:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47033 * 2 1 4 4 H 1.09001 * 109.47230 * 304.99852 * 3 2 1 5 5 C 1.50696 * 109.47147 * 184.99490 * 3 2 1 6 6 H 1.08000 * 119.99887 * 239.99753 * 5 3 2 7 7 C 1.37883 * 119.99722 * 60.00281 * 5 3 2 8 8 N 1.31505 * 119.99878 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99764 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47269 * 89.99862 * 9 7 5 11 11 H 1.48500 * 109.46966 * 209.99911 * 9 7 5 12 12 H 1.48502 * 109.47037 * 329.99661 * 9 7 5 13 13 N 1.46500 * 109.47118 * 64.99468 * 3 2 1 14 14 C 1.34771 * 120.00389 * 275.00076 * 13 3 2 15 15 O 1.21594 * 120.00002 * 359.97438 * 14 13 3 16 16 N 1.34779 * 120.00422 * 179.97438 * 14 13 3 17 17 C 1.40183 * 120.00466 * 184.67594 * 16 14 13 18 18 C 1.39369 * 120.42023 * 325.01969 * 17 16 14 19 19 C 1.38322 * 118.42395 * 179.75439 * 18 17 16 20 20 C 1.38907 * 119.18618 * 0.52556 * 19 18 17 21 21 O 1.35752 * 119.61115 * 179.73067 * 20 19 18 22 22 C 1.42900 * 117.00187 * 179.72708 * 21 20 19 23 23 C 1.52998 * 109.47356 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47177 * 65.00051 * 23 22 21 25 25 C 1.42903 * 113.99876 * 179.97438 * 24 23 22 26 26 N 1.32201 * 120.77587 * 359.45946 * 20 19 18 27 27 C 1.31954 * 121.72003 * 0.27570 * 26 20 19 28 28 H 1.09004 * 109.47328 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47374 * 300.00184 * 1 2 3 30 30 H 1.09005 * 109.47210 * 60.00344 * 1 2 3 31 31 H 1.08999 * 109.47374 * 239.99816 * 2 1 3 32 32 H 1.08998 * 109.46839 * 119.99675 * 2 1 3 33 33 H 0.97001 * 120.00000 * 179.97438 * 8 7 5 34 34 H 0.97011 * 120.00029 * 94.99970 * 13 3 2 35 35 H 0.97001 * 119.99846 * 4.67094 * 16 14 13 36 36 H 1.07997 * 120.78624 * 359.97438 * 18 17 16 37 37 H 1.08000 * 120.40640 * 180.26307 * 19 18 17 38 38 H 1.09002 * 109.46592 * 60.00308 * 22 21 20 39 39 H 1.08997 * 109.47201 * 300.00439 * 22 21 20 40 40 H 1.09000 * 109.46944 * 185.00410 * 23 22 21 41 41 H 1.09003 * 109.46763 * 305.00141 * 23 22 21 42 42 H 1.09003 * 109.46804 * 60.00444 * 25 24 23 43 43 H 1.08997 * 109.47197 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.47217 * 300.00286 * 25 24 23 45 45 H 1.08001 * 119.62614 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8890 0.6525 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3367 -2.1727 9 14 6.0050 0.8813 -1.3816 10 1 6.5549 -0.3500 -0.7599 11 1 6.3830 0.9225 -2.8170 12 1 6.5569 2.0739 -0.6900 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3413 2.6326 0.4316 16 7 0.0782 3.2666 2.5186 17 6 -1.2211 3.7697 2.6734 18 6 -1.8963 4.3259 1.5884 19 6 -3.1786 4.8052 1.7864 20 6 -3.7429 4.7270 3.0533 21 8 -4.9988 5.1998 3.2586 22 6 -5.5267 5.0859 4.5816 23 6 -6.9416 5.6670 4.6179 24 8 -7.8030 4.8752 3.7977 25 6 -9.1557 5.3345 3.7624 26 7 -3.0733 4.1928 4.0603 27 6 -1.8506 3.7207 3.9076 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8294 -0.0611 -2.9497 34 1 2.2718 2.1232 1.9979 35 1 0.7204 3.3518 3.2406 36 1 -1.4307 4.3782 0.6154 37 1 -3.7327 5.2388 0.9670 38 1 -4.8900 5.6350 5.2753 39 1 -5.5582 4.0355 4.8710 40 1 -7.3103 5.6615 5.6436 41 1 -6.9235 6.6907 4.2438 42 1 -9.1840 6.3514 3.3707 43 1 -9.7446 4.6812 3.1186 44 1 -9.5702 5.3217 4.7704 45 1 -1.3347 3.2909 4.7535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157140014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:18 Heat of formation + Delta-G solvation = -72.521818 kcal Electronic energy + Delta-G solvation = -26750.198116 eV Core-core repulsion = 22768.825741 eV Total energy + Delta-G solvation = -3981.372376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80134 -39.61032 -38.44764 -37.45068 -35.49309 -34.20361 -32.56540 -32.11929 -31.17668 -30.63731 -28.67747 -26.84179 -26.62865 -24.25481 -23.44021 -22.72866 -22.40252 -20.70163 -19.56915 -18.70311 -18.19243 -17.39854 -17.14404 -16.75173 -16.02265 -15.94679 -15.56104 -15.28662 -15.14501 -14.90822 -14.35479 -14.28332 -13.62350 -13.47401 -13.44454 -13.17570 -12.71004 -12.67481 -12.54057 -12.24369 -11.89504 -11.65822 -11.57265 -11.27359 -11.14061 -11.00702 -10.85014 -10.36950 -10.31748 -10.19178 -10.06565 -9.80156 -9.68419 -9.52151 -9.14368 -9.04932 -8.53785 -8.01413 -7.65381 -6.15130 -4.24676 1.18903 1.40045 2.90992 3.17068 3.22483 3.30093 3.32352 3.40709 3.65184 3.98982 4.29064 4.32367 4.63241 4.79979 4.84139 4.93284 4.98624 5.01353 5.04047 5.13453 5.16976 5.21642 5.34855 5.39436 5.48074 5.69363 5.85627 6.20549 6.39406 6.40596 6.47347 6.65782 6.76434 6.86381 6.96995 7.09391 7.29237 7.32034 7.35506 7.42391 7.61847 7.83127 7.86248 7.94537 8.16151 8.69665 8.80566 9.20037 9.43497 10.90134 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034442 B = 0.002078 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.769931 B =13469.318151 C =13799.992680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.717 5.717 14 C 0.693 3.307 15 O -0.578 6.578 16 N -0.691 5.691 17 C 0.098 3.902 18 C -0.043 4.043 19 C -0.167 4.167 20 C 0.293 3.707 21 O -0.301 6.301 22 C 0.074 3.926 23 C 0.061 3.939 24 O -0.384 6.384 25 C 0.031 3.969 26 N -0.525 5.525 27 C 0.102 3.898 28 H 0.021 0.979 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.161 0.839 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.040 0.960 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 10.098 14.813 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.455 6.455 16 N -0.341 5.341 17 C -0.001 4.001 18 C -0.071 4.071 19 C -0.188 4.188 20 C 0.114 3.886 21 O -0.209 6.209 22 C -0.001 4.001 23 C -0.016 4.016 24 O -0.303 6.303 25 C -0.066 4.066 26 N -0.248 5.248 27 C -0.056 4.056 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.019 9.817 14.221 24.254 hybrid contribution 1.883 0.111 0.216 1.899 sum -15.136 9.928 14.437 23.153 Atomic orbital electron populations 1.21813 0.98236 0.97947 1.01258 1.21961 0.92701 0.99837 1.02254 1.18737 0.94024 0.88913 0.79876 0.93160 1.21211 0.90613 1.39186 1.06342 0.92086 1.24878 0.98621 0.94796 0.95365 1.69889 1.35146 1.37432 1.09332 0.86445 0.84809 0.78412 0.77399 1.20560 1.21067 1.19902 1.45835 1.13199 1.58363 1.19364 1.16117 0.83704 0.78648 0.82189 1.90884 1.51845 1.64834 1.37983 1.42707 1.11344 1.61567 1.18438 1.18396 0.86979 0.99289 0.95392 1.21738 0.93243 0.91679 1.00394 1.21016 0.96254 1.05838 0.95723 1.19703 0.85176 0.93496 0.90252 1.86278 1.25889 1.76791 1.31902 1.22578 0.91863 1.02615 0.83064 1.22651 0.88938 0.95129 0.94875 1.87995 1.19537 1.53488 1.69286 1.22757 0.83056 0.99842 1.00915 1.67201 1.09364 1.15131 1.33111 1.22074 0.89402 0.97989 0.96163 0.95991 0.94334 0.93133 0.88240 0.95087 0.92506 0.78168 0.76158 0.82125 0.84063 0.90177 0.90818 0.91193 0.92243 0.93971 0.89485 0.94135 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.29 6.95 2.24 -69.08 -0.15 6.79 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.67 8.73 -34.44 -0.30 -13.97 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.72 -14.01 5.03 -59.81 -0.30 -14.31 16 14 C 0.69 13.06 6.99 -86.92 -0.61 12.45 16 15 O -0.58 -12.81 10.96 5.28 0.06 -12.75 16 16 N -0.69 -9.82 5.36 -14.10 -0.08 -9.89 16 17 C 0.10 1.41 6.32 -83.47 -0.53 0.88 16 18 C -0.04 -0.66 8.80 -39.13 -0.34 -1.00 16 19 C -0.17 -2.35 10.03 -39.30 -0.39 -2.74 16 20 C 0.29 4.15 7.49 -17.15 -0.13 4.02 16 21 O -0.30 -4.00 10.08 -23.81 -0.24 -4.24 16 22 C 0.07 0.76 5.69 37.16 0.21 0.97 16 23 C 0.06 0.50 6.32 37.16 0.23 0.73 16 24 O -0.38 -4.07 10.67 -40.08 -0.43 -4.49 16 25 C 0.03 0.21 11.01 101.05 1.11 1.32 16 26 N -0.52 -7.15 9.20 -13.18 -0.12 -7.27 16 27 C 0.10 1.29 11.11 -17.35 -0.19 1.10 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 30 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.39 6.42 8.56 -40.82 -0.35 6.07 16 35 H 0.40 4.27 8.84 -40.82 -0.36 3.91 16 36 H 0.16 2.73 6.32 -52.49 -0.33 2.39 16 37 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -31.54 373.54 -7.52 -39.07 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.63 Total: 10.36 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.02 Total: 6.30 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.13 Total: -55.04 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.61 Total: -21.48 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.54 -7.52 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157140014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.456 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds