Wall clock time and date at job start Tue Mar 31 2020 14:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47394 * 2 1 4 4 C 1.46498 * 119.99561 * 269.72407 * 3 2 1 5 5 C 1.50701 * 109.47580 * 89.99657 * 4 3 2 6 6 H 1.08005 * 119.99527 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00195 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99975 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47038 * 60.00307 * 9 7 5 11 11 H 1.48502 * 109.47138 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47654 * 300.00112 * 9 7 5 13 13 C 1.34772 * 120.00204 * 89.99017 * 3 2 1 14 14 O 1.21597 * 119.99676 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00447 * 0.02562 * 13 3 2 16 16 C 1.40441 * 120.00401 * 174.79645 * 15 13 3 17 17 C 1.40616 * 120.08280 * 57.73872 * 16 15 13 18 18 C 1.36360 * 119.24385 * 179.97438 * 17 16 15 19 19 C 1.40496 * 119.40089 * 0.02562 * 18 17 16 20 20 O 1.22099 * 119.92690 * 180.02562 * 19 18 17 21 21 N 1.34636 * 120.14747 * 359.97438 * 19 18 17 22 22 C 1.46504 * 119.60926 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47029 * 89.99978 * 22 21 19 24 24 O 1.42904 * 109.46865 * 64.99970 * 23 22 21 25 25 C 1.42894 * 113.99765 * 180.02562 * 24 23 22 26 26 C 1.35868 * 120.08695 * 237.46841 * 16 15 13 27 27 H 1.08998 * 109.47099 * 300.00441 * 1 2 3 28 28 H 1.09003 * 109.46784 * 60.00473 * 1 2 3 29 29 H 1.08993 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47799 * 239.99813 * 2 1 3 31 31 H 1.09000 * 109.47050 * 119.99077 * 2 1 3 32 32 H 1.08998 * 109.46940 * 209.99738 * 4 3 2 33 33 H 1.09006 * 109.47213 * 329.99471 * 4 3 2 34 34 H 0.96998 * 119.99677 * 180.02562 * 8 7 5 35 35 H 0.97008 * 119.99343 * 354.80288 * 15 13 3 36 36 H 1.07999 * 120.37696 * 0.03384 * 17 16 15 37 37 H 1.08001 * 120.29810 * 180.02562 * 18 17 16 38 38 H 1.08995 * 109.47111 * 210.00327 * 22 21 19 39 39 H 1.09001 * 109.47002 * 330.00683 * 22 21 19 40 40 H 1.08995 * 109.47113 * 185.00344 * 23 22 21 41 41 H 1.09005 * 109.47044 * 305.00737 * 23 22 21 42 42 H 1.09008 * 109.47319 * 300.00223 * 25 24 23 43 43 H 1.09001 * 109.47692 * 60.00261 * 25 24 23 44 44 H 1.08998 * 109.47401 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.70200 * 359.97052 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2683 2.0697 -1.2688 5 6 1.0145 2.7794 -1.7108 6 1 0.1207 2.7229 -1.1071 7 6 1.0085 3.5008 -2.8857 8 7 2.0967 3.5692 -3.6210 9 14 -0.5459 4.3799 -3.4339 10 1 -0.9440 5.3711 -2.4022 11 1 -0.2922 5.0789 -4.7193 12 1 -1.6372 3.3892 -3.6156 13 6 2.2429 2.0167 1.1671 14 8 2.6487 3.1629 1.1670 15 7 2.0186 1.3814 2.3344 16 6 2.3550 2.0027 3.5481 17 6 1.7993 3.2514 3.8785 18 6 2.1375 3.8390 5.0616 19 6 3.0333 3.1860 5.9248 20 8 3.3423 3.7032 6.9868 21 7 3.5509 1.9908 5.5840 22 6 4.4835 1.3201 6.4933 23 6 3.7017 0.4234 7.4554 24 8 3.0693 -0.6264 6.7205 25 6 2.3084 -1.5255 7.5296 26 6 3.2141 1.3963 4.4085 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.0696 2.7966 -1.1360 33 1 2.5599 1.3417 -2.0259 34 1 2.0925 4.0771 -4.4474 35 1 1.6248 0.4948 2.3361 36 1 1.1118 3.7391 3.2033 37 1 1.7204 4.7977 5.3327 38 1 5.1805 0.7128 5.9159 39 1 5.0372 2.0672 7.0619 40 1 4.3850 -0.0063 8.1879 41 1 2.9438 1.0151 7.9688 42 1 2.9624 -1.9957 8.2640 43 1 1.5215 -0.9740 8.0443 44 1 1.8610 -2.2929 6.8979 45 1 3.6359 0.4350 4.1548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162847981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:40 Heat of formation + Delta-G solvation = -59.439612 kcal Electronic energy + Delta-G solvation = -27825.488195 eV Core-core repulsion = 23844.683107 eV Total energy + Delta-G solvation = -3980.805089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42997 -39.64763 -38.23629 -36.99624 -35.57127 -34.94242 -33.43003 -32.52841 -30.46204 -30.02788 -28.80221 -26.95650 -26.65130 -24.45859 -23.71453 -22.97116 -22.77570 -21.72878 -19.49736 -18.25487 -17.59112 -17.15515 -16.70520 -16.60933 -16.42468 -16.35773 -15.96813 -15.30999 -14.88649 -14.66201 -14.43693 -14.13627 -14.04903 -13.55555 -13.22327 -13.00021 -12.84699 -12.78164 -12.61376 -12.39533 -12.17647 -12.03779 -11.75770 -11.58305 -11.42721 -11.18516 -11.00435 -10.74776 -10.50780 -10.19651 -10.12115 -10.04477 -9.88329 -9.61341 -9.38484 -9.12814 -8.41080 -7.80209 -7.54168 -6.02432 -4.06419 0.90390 1.87729 2.46336 3.28323 3.31068 3.32641 3.37583 3.41499 3.69365 3.91277 4.36969 4.46974 4.52539 4.55797 4.65823 4.84241 4.95108 4.96554 4.98446 5.10716 5.18069 5.27903 5.30792 5.31612 5.34671 5.39808 5.67651 5.74188 5.87028 6.05394 6.06610 6.24875 6.27527 6.45219 6.65107 6.73048 6.79232 6.97472 7.13101 7.35433 7.53478 7.68482 7.95905 8.04154 8.25563 8.62411 8.94244 9.29568 9.58868 11.05573 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.003041 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.195287 B = 9204.870767 C = 9990.863548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 N -0.609 5.609 4 C 0.261 3.739 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.701 3.299 14 O -0.572 6.572 15 N -0.696 5.696 16 C 0.071 3.929 17 C 0.010 3.990 18 C -0.245 4.245 19 C 0.514 3.486 20 O -0.566 6.566 21 N -0.485 5.485 22 C 0.098 3.902 23 C 0.045 3.955 24 O -0.390 6.390 25 C 0.033 3.967 26 C 0.120 3.880 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.400 0.600 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -13.423 19.577 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 N -0.344 5.344 4 C 0.142 3.858 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.403 3.597 14 O -0.448 6.448 15 N -0.352 5.352 16 C -0.028 4.028 17 C -0.014 4.014 18 C -0.267 4.267 19 C 0.317 3.683 20 O -0.451 6.451 21 N -0.197 5.197 22 C -0.024 4.024 23 C -0.033 4.033 24 O -0.309 6.309 25 C -0.063 4.063 26 C -0.008 4.008 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.106 0.894 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.894 -12.202 19.784 23.321 hybrid contribution -1.260 -0.059 -0.262 1.289 sum 0.634 -12.261 19.521 23.061 Atomic orbital electron populations 1.22266 0.96326 1.00917 1.03563 1.21335 0.94525 0.83913 1.01450 1.47591 1.67360 1.13212 1.06206 1.19228 0.97420 0.92292 0.76874 1.21434 0.97509 1.31176 1.06112 0.92364 1.24922 0.96377 0.96286 0.96513 1.69916 1.27320 1.41722 1.14530 0.86599 0.83266 0.79916 0.77854 1.20227 1.21254 1.20322 1.15931 0.79183 0.84630 0.79969 1.90928 1.52246 1.15995 1.85614 1.42639 1.68588 1.21398 1.02554 1.16433 1.01751 0.95926 0.88658 1.21677 0.93292 0.92497 0.93884 1.21936 1.04887 1.03602 0.96312 1.17148 0.82939 0.80180 0.88021 1.90924 1.63573 1.65370 1.25193 1.45183 1.38885 1.18521 1.17141 1.22010 0.91439 0.96040 0.92915 1.22928 0.96987 0.89053 0.94310 1.87859 1.67560 1.40687 1.34834 1.22740 0.94722 0.93009 0.95833 1.21721 0.94270 0.98977 0.85870 0.93268 0.90394 0.92802 0.90375 0.92632 0.93805 0.94920 0.92706 0.76283 0.84273 0.83223 0.88231 0.86579 0.91433 0.92171 0.94008 0.94024 0.89380 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.65 5.89 -4.04 -0.02 1.63 16 3 N -0.61 -12.22 2.46 -180.80 -0.44 -12.66 16 4 C 0.26 6.60 5.21 -5.19 -0.03 6.57 16 5 C -0.52 -14.35 8.94 -34.44 -0.31 -14.65 16 6 H 0.06 1.59 7.42 -52.48 -0.39 1.20 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.70 14.13 8.14 -86.93 -0.71 13.42 16 14 O -0.57 -14.23 15.02 5.28 0.08 -14.15 16 15 N -0.70 -10.27 5.13 -14.37 -0.07 -10.34 16 16 C 0.07 1.01 5.77 -83.86 -0.48 0.52 16 17 C 0.01 0.15 8.91 -39.36 -0.35 -0.20 16 18 C -0.25 -3.59 9.98 -39.41 -0.39 -3.98 16 19 C 0.51 7.65 7.40 -15.47 -0.11 7.54 16 20 O -0.57 -9.74 16.63 4.83 0.08 -9.66 16 21 N -0.49 -5.81 2.57 -119.57 -0.31 -6.12 16 22 C 0.10 0.85 5.77 -4.04 -0.02 0.83 16 23 C 0.04 0.35 6.28 37.16 0.23 0.58 16 24 O -0.39 -3.34 10.14 -35.23 -0.36 -3.69 16 25 C 0.03 0.20 11.01 101.05 1.11 1.32 16 26 C 0.12 1.40 9.66 -16.57 -0.16 1.24 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.36 7.28 -51.93 -0.38 0.98 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 31 H 0.06 0.62 6.44 -51.93 -0.33 0.29 16 32 H 0.04 1.27 7.41 -51.93 -0.39 0.88 16 33 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.40 4.66 6.63 -40.82 -0.27 4.39 16 36 H 0.14 2.25 7.92 -52.49 -0.42 1.83 16 37 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 38 H 0.10 0.65 8.02 -51.93 -0.42 0.23 16 39 H 0.12 1.03 7.38 -51.93 -0.38 0.64 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 43 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.16 1.47 8.04 -52.49 -0.42 1.04 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -35.67 380.45 -7.27 -42.94 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.73 Total: 2.53 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: -0.96 Total: 14.38 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.09 Total: -54.66 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.20 Total: -27.51 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.67 -7.27 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162847981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.496 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds