Wall clock time and date at job start Tue Mar 31 2020 14:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47394 * 2 1 4 4 C 1.46498 * 119.99561 * 269.72407 * 3 2 1 5 5 C 1.50701 * 109.47580 * 89.99657 * 4 3 2 6 6 H 1.08005 * 119.99527 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00195 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99975 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47038 * 60.00307 * 9 7 5 11 11 H 1.48502 * 109.47138 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47654 * 300.00112 * 9 7 5 13 13 C 1.34772 * 120.00204 * 89.99017 * 3 2 1 14 14 O 1.21597 * 119.99676 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00447 * 0.02562 * 13 3 2 16 16 C 1.40441 * 120.00401 * 174.79645 * 15 13 3 17 17 C 1.40616 * 120.08280 * 57.73872 * 16 15 13 18 18 C 1.36360 * 119.24385 * 179.97438 * 17 16 15 19 19 C 1.40496 * 119.40089 * 0.02562 * 18 17 16 20 20 O 1.22099 * 119.92690 * 180.02562 * 19 18 17 21 21 N 1.34636 * 120.14747 * 359.97438 * 19 18 17 22 22 C 1.46504 * 119.60926 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47029 * 89.99978 * 22 21 19 24 24 O 1.42904 * 109.46865 * 64.99970 * 23 22 21 25 25 C 1.42894 * 113.99765 * 180.02562 * 24 23 22 26 26 C 1.35868 * 120.08695 * 237.46841 * 16 15 13 27 27 H 1.08998 * 109.47099 * 300.00441 * 1 2 3 28 28 H 1.09003 * 109.46784 * 60.00473 * 1 2 3 29 29 H 1.08993 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47799 * 239.99813 * 2 1 3 31 31 H 1.09000 * 109.47050 * 119.99077 * 2 1 3 32 32 H 1.08998 * 109.46940 * 209.99738 * 4 3 2 33 33 H 1.09006 * 109.47213 * 329.99471 * 4 3 2 34 34 H 0.96998 * 119.99677 * 180.02562 * 8 7 5 35 35 H 0.97008 * 119.99343 * 354.80288 * 15 13 3 36 36 H 1.07999 * 120.37696 * 0.03384 * 17 16 15 37 37 H 1.08001 * 120.29810 * 180.02562 * 18 17 16 38 38 H 1.08995 * 109.47111 * 210.00327 * 22 21 19 39 39 H 1.09001 * 109.47002 * 330.00683 * 22 21 19 40 40 H 1.08995 * 109.47113 * 185.00344 * 23 22 21 41 41 H 1.09005 * 109.47044 * 305.00737 * 23 22 21 42 42 H 1.09008 * 109.47319 * 300.00223 * 25 24 23 43 43 H 1.09001 * 109.47692 * 60.00261 * 25 24 23 44 44 H 1.08998 * 109.47401 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.70200 * 359.97052 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2683 2.0697 -1.2688 5 6 1.0145 2.7794 -1.7108 6 1 0.1207 2.7229 -1.1071 7 6 1.0085 3.5008 -2.8857 8 7 2.0967 3.5692 -3.6210 9 14 -0.5459 4.3799 -3.4339 10 1 -0.9440 5.3711 -2.4022 11 1 -0.2922 5.0789 -4.7193 12 1 -1.6372 3.3892 -3.6156 13 6 2.2429 2.0167 1.1671 14 8 2.6487 3.1629 1.1670 15 7 2.0186 1.3814 2.3344 16 6 2.3550 2.0027 3.5481 17 6 1.7993 3.2514 3.8785 18 6 2.1375 3.8390 5.0616 19 6 3.0333 3.1860 5.9248 20 8 3.3423 3.7032 6.9868 21 7 3.5509 1.9908 5.5840 22 6 4.4835 1.3201 6.4933 23 6 3.7017 0.4234 7.4554 24 8 3.0693 -0.6264 6.7205 25 6 2.3084 -1.5255 7.5296 26 6 3.2141 1.3963 4.4085 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.0696 2.7966 -1.1360 33 1 2.5599 1.3417 -2.0259 34 1 2.0925 4.0771 -4.4474 35 1 1.6248 0.4948 2.3361 36 1 1.1118 3.7391 3.2033 37 1 1.7204 4.7977 5.3327 38 1 5.1805 0.7128 5.9159 39 1 5.0372 2.0672 7.0619 40 1 4.3850 -0.0063 8.1879 41 1 2.9438 1.0151 7.9688 42 1 2.9624 -1.9957 8.2640 43 1 1.5215 -0.9740 8.0443 44 1 1.8610 -2.2929 6.8979 45 1 3.6359 0.4350 4.1548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162847981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:39 Heat of formation + Delta-G solvation = -84.022559 kcal Electronic energy + Delta-G solvation = -27826.554192 eV Core-core repulsion = 23844.683107 eV Total energy + Delta-G solvation = -3981.871085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52855 -41.11886 -38.85972 -38.25557 -36.98132 -36.24399 -34.98831 -34.25014 -31.48736 -31.26734 -30.10051 -28.60550 -27.29850 -25.39162 -25.18926 -24.31721 -24.11254 -22.84285 -20.91553 -19.50071 -18.76554 -18.54473 -18.28957 -17.79262 -17.30804 -17.27300 -16.98070 -16.63693 -16.19958 -15.97557 -15.73687 -15.40414 -15.13065 -15.01043 -14.47738 -14.38260 -14.13085 -13.76027 -13.63827 -13.58701 -13.38202 -13.22819 -12.96816 -12.92810 -12.72857 -12.60373 -12.49039 -12.16262 -12.13667 -11.76914 -11.62095 -11.21364 -11.10850 -11.03406 -10.67917 -10.57980 -10.48080 -9.41674 -8.76053 -8.15620 -6.28349 -0.17812 0.69123 1.38732 1.42413 1.43409 1.49554 1.97346 2.29077 2.42770 2.57496 2.81004 3.09804 3.15482 3.67813 3.71891 3.91965 3.93715 4.11676 4.15396 4.19344 4.39497 4.50127 4.50818 4.51953 4.58041 4.60123 4.69502 4.73525 4.90737 4.93591 5.02445 5.04953 5.11457 5.13863 5.28420 5.37846 5.55784 5.66135 5.76288 5.85730 5.98946 6.13176 6.14317 6.15554 6.80652 6.90637 7.18090 7.38023 7.77253 8.90586 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.003041 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.195287 B = 9204.870767 C = 9990.863548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.613 5.613 4 C 0.278 3.722 5 C -0.531 4.531 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.261 1.261 13 C 0.699 3.301 14 O -0.628 6.628 15 N -0.668 5.668 16 C 0.039 3.961 17 C 0.005 3.995 18 C -0.259 4.259 19 C 0.508 3.492 20 O -0.595 6.595 21 N -0.479 5.479 22 C 0.090 3.910 23 C 0.049 3.951 24 O -0.405 6.405 25 C 0.029 3.971 26 C 0.158 3.842 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.103 0.897 32 H -0.003 1.003 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.419 0.581 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.099 0.901 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 -16.360 20.832 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.348 5.348 4 C 0.156 3.844 5 C -0.570 4.570 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.206 1.206 11 H -0.207 1.207 12 H -0.185 1.185 13 C 0.401 3.599 14 O -0.508 6.508 15 N -0.324 5.324 16 C -0.059 4.059 17 C -0.018 4.018 18 C -0.281 4.281 19 C 0.312 3.688 20 O -0.482 6.482 21 N -0.188 5.188 22 C -0.030 4.030 23 C -0.028 4.028 24 O -0.324 6.324 25 C -0.067 4.067 26 C 0.027 3.973 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.015 0.985 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.168 0.832 38 H 0.150 0.850 39 H 0.132 0.868 40 H 0.114 0.886 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.117 0.883 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.556 -15.237 21.091 26.066 hybrid contribution -1.110 0.757 -0.565 1.457 sum 0.446 -14.480 20.526 25.123 Atomic orbital electron populations 1.22190 0.95659 1.02884 1.01665 1.21710 0.95032 0.81044 1.03968 1.47431 1.67647 1.15077 1.04616 1.18657 0.95196 0.91411 0.79118 1.21714 0.98005 1.31236 1.06064 0.92675 1.25772 0.99465 0.97101 0.96754 1.70035 1.29308 1.42670 1.14994 0.85591 0.79880 0.78839 0.77227 1.20649 1.20689 1.18515 1.16101 0.78655 0.84095 0.81088 1.90890 1.54640 1.18686 1.86605 1.42127 1.67688 1.21616 1.01016 1.16498 1.04014 0.96376 0.89029 1.21597 0.93308 0.93258 0.93667 1.21951 1.05646 1.04084 0.96463 1.17144 0.83037 0.81061 0.87575 1.90902 1.64712 1.66371 1.26237 1.45325 1.38276 1.17704 1.17491 1.22371 0.91295 0.96322 0.93047 1.22876 0.96862 0.88806 0.94267 1.87808 1.67937 1.40935 1.35736 1.22886 0.94774 0.92818 0.96263 1.22110 0.91635 0.99186 0.84332 0.93197 0.94215 0.88841 0.90014 0.87947 0.98456 0.95467 0.92612 0.74047 0.86174 0.83159 0.85049 0.86823 0.88625 0.94239 0.92532 0.94497 0.88275 0.78144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 10.24 71.98 0.74 -3.55 16 2 C 0.10 2.83 5.89 86.38 0.51 3.34 16 3 N -0.61 -24.54 2.46 -844.19 -2.07 -26.61 16 4 C 0.28 14.51 5.21 85.63 0.45 14.96 16 5 C -0.53 -29.84 8.94 25.60 0.23 -29.61 16 6 H 0.06 3.06 7.42 -2.91 -0.02 3.04 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.70 28.13 8.14 179.06 1.46 29.59 16 14 O -0.63 -32.37 15.02 -4.02 -0.06 -32.43 16 15 N -0.67 -18.48 5.13 -317.64 -1.63 -20.11 16 16 C 0.04 1.04 5.77 37.79 0.22 1.26 16 17 C 0.01 0.16 8.91 22.41 0.20 0.36 16 18 C -0.26 -7.78 9.98 22.38 0.22 -7.56 16 19 C 0.51 14.96 7.40 84.81 0.63 15.59 16 20 O -0.59 -20.56 16.63 -5.64 -0.09 -20.65 16 21 N -0.48 -10.45 2.57 -650.34 -1.67 -12.13 16 22 C 0.09 1.30 5.77 86.38 0.50 1.80 16 23 C 0.05 0.63 6.28 71.98 0.45 1.08 16 24 O -0.40 -5.49 10.14 -148.98 -1.51 -7.00 16 25 C 0.03 0.26 11.01 113.37 1.25 1.51 16 26 C 0.16 3.19 9.66 83.50 0.81 4.00 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.34 7.28 -2.39 -0.02 1.32 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.18 7.89 -2.39 -0.02 2.16 16 31 H 0.10 1.82 6.44 -2.39 -0.02 1.81 16 32 H 0.00 -0.16 7.41 -2.39 -0.02 -0.18 16 33 H 0.03 1.44 7.89 -2.38 -0.02 1.42 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.42 8.26 6.63 -92.70 -0.62 7.64 16 36 H 0.12 4.13 7.92 -2.91 -0.02 4.10 16 37 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.13 1.11 8.02 -2.39 -0.02 1.09 16 39 H 0.11 1.78 7.38 -2.39 -0.02 1.76 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 43 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.20 2.56 8.04 -2.91 -0.02 2.53 16 Total: -1.00 -82.15 380.45 3.77 -78.38 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.38 Total: 15.62 kcal Atomic # 6 Polarization: 25.56 SS G_CDS: 8.11 Total: 33.67 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.09 Total: -114.43 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -1.66 Total: -60.08 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -82.15 3.77 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162847981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.645 kcal (2) G-P(sol) polarization free energy of solvation -82.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds