Wall clock time and date at job start Tue Mar 31 2020 14:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46988 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46983 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99624 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99634 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99520 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00320 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46712 * 90.00023 * 15 13 11 17 17 H 1.48500 * 109.46916 * 209.99365 * 15 13 11 18 18 H 1.48499 * 109.47159 * 330.00030 * 15 13 11 19 19 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 20 20 O 1.21284 * 120.00151 * 240.00190 * 19 2 1 21 21 N 1.34778 * 120.00504 * 60.00004 * 19 2 1 22 22 C 1.46496 * 120.00311 * 180.02562 * 21 19 2 23 23 C 1.50707 * 109.46988 * 179.97438 * 22 21 19 24 24 C 1.34520 * 125.78627 * 90.00219 * 23 22 21 25 25 C 1.41381 * 106.83759 * 179.97438 * 24 23 22 26 26 C 1.34514 * 106.84029 * 0.02562 * 25 24 23 27 27 O 1.34297 * 125.78863 * 269.69048 * 23 22 21 28 28 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 30 30 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 31 31 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 32 32 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 33 33 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 34 34 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 35 35 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 36 36 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 37 37 H 1.08998 * 109.46983 * 299.99930 * 10 9 8 38 38 H 1.08997 * 109.47123 * 59.99717 * 10 9 8 39 39 H 0.97003 * 119.99577 * 179.97438 * 14 13 11 40 40 H 0.97006 * 119.99534 * 0.02562 * 21 19 2 41 41 H 1.09001 * 109.46995 * 299.99992 * 22 21 19 42 42 H 1.08994 * 109.47208 * 60.00147 * 22 21 19 43 43 H 1.07996 * 126.57832 * 0.03555 * 24 23 22 44 44 H 1.08001 * 126.57743 * 179.97438 * 25 24 23 45 45 H 1.08004 * 125.78538 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2436 -0.8731 5.8060 10 6 3.3842 -0.1111 7.1253 11 6 3.8943 -1.0448 8.1926 12 1 4.0975 -2.0783 7.9538 13 6 4.1017 -0.5794 9.4737 14 7 4.5464 -1.3944 10.4053 15 14 3.7496 1.2080 9.8868 16 1 2.3394 1.3446 10.3317 17 1 4.6572 1.6526 10.9748 18 1 3.9722 2.0475 8.6822 19 6 2.0324 -0.7104 -1.2304 20 8 2.7297 -1.6965 -1.1191 21 7 1.7069 -0.2500 -2.4545 22 6 2.1949 -0.9410 -3.6506 23 6 1.6921 -0.2309 -4.8812 24 6 2.3207 0.7698 -5.5240 25 6 1.5001 1.1344 -6.6159 26 6 0.4189 0.3352 -6.5748 27 8 0.5434 -0.4937 -5.5254 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 2.2490 -1.6317 1.1527 32 1 2.8216 -1.5960 3.4155 33 1 3.4269 0.8985 4.5936 34 1 1.7531 0.4685 5.0195 35 1 2.5412 -1.6967 5.9346 36 1 4.2154 -1.2673 5.5090 37 1 4.0866 0.7122 6.9962 38 1 2.4125 0.2834 7.4223 39 1 4.6927 -1.0669 11.3066 40 1 1.1495 0.5389 -2.5436 41 1 3.2849 -0.9414 -3.6507 42 1 1.8311 -1.9684 -3.6505 43 1 3.2705 1.2094 -5.2576 44 1 1.7021 1.9070 -7.3431 45 1 -0.4068 0.3534 -7.2708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170881399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:03 Heat of formation + Delta-G solvation = -87.304032 kcal Electronic energy + Delta-G solvation = -25693.167865 eV Core-core repulsion = 21711.154485 eV Total energy + Delta-G solvation = -3982.013381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.55631 -41.57846 -40.48889 -37.21163 -36.33706 -35.94425 -35.13524 -33.95685 -33.42905 -32.12070 -30.79972 -28.71009 -27.19115 -25.42002 -24.28634 -22.72166 -22.24225 -21.90899 -21.64553 -21.32481 -19.83900 -19.02046 -18.64155 -17.80331 -17.56646 -17.09719 -16.87598 -16.59074 -16.50408 -16.17797 -15.74473 -15.45537 -15.29011 -15.10539 -14.74844 -14.71567 -14.26650 -13.86432 -13.78135 -13.77713 -13.56176 -13.53446 -13.32888 -12.98252 -12.73241 -12.69851 -12.62371 -11.91722 -11.76519 -11.57308 -11.33470 -11.30002 -11.19653 -10.89168 -10.74492 -10.44915 -10.32418 -9.84812 -9.53941 -8.27855 -6.31857 0.57437 1.37751 1.38606 1.40198 1.45018 1.52401 1.66750 1.95766 2.10080 2.33379 2.38184 3.08059 3.25665 3.50150 3.61501 4.00248 4.08408 4.09685 4.12130 4.13913 4.24937 4.35270 4.48125 4.53938 4.62015 4.76702 4.88288 4.92877 4.93241 4.99248 5.05798 5.11126 5.15508 5.18984 5.34853 5.43438 5.53807 5.54738 5.58608 5.66721 5.94568 6.14504 6.28168 6.29284 6.76208 6.95143 7.03839 7.33030 7.52598 8.88648 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041126 B = 0.001587 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.676660 B =17642.893439 C =17860.461691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.114 0.886 4 N -0.725 5.725 5 C 0.706 3.294 6 O -0.629 6.629 7 N -0.733 5.733 8 C 0.148 3.852 9 C -0.101 4.101 10 C -0.011 4.011 11 C -0.532 4.532 12 H 0.036 0.964 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.247 1.247 19 C 0.522 3.478 20 O -0.564 6.564 21 N -0.709 5.709 22 C 0.206 3.794 23 C -0.054 4.054 24 C -0.186 4.186 25 C -0.232 4.232 26 C -0.026 4.026 27 O -0.188 6.188 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.266 0.734 40 H 0.417 0.583 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 5.049 -39.231 40.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.132 0.868 4 N -0.382 5.382 5 C 0.405 3.595 6 O -0.510 6.510 7 N -0.388 5.388 8 C 0.023 3.977 9 C -0.139 4.139 10 C -0.049 4.049 11 C -0.570 4.570 12 H 0.054 0.946 13 C -0.192 4.192 14 N -0.592 5.592 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.170 1.170 19 C 0.308 3.692 20 O -0.442 6.442 21 N -0.363 5.363 22 C 0.084 3.916 23 C -0.104 4.104 24 C -0.206 4.206 25 C -0.251 4.251 26 C -0.094 4.094 27 O -0.085 6.085 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.248 0.752 32 H 0.246 0.754 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.254 0.746 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.445 5.162 -38.844 40.553 hybrid contribution 0.270 0.036 0.539 0.604 sum -10.175 5.198 -38.304 39.972 Atomic orbital electron populations 1.22133 0.91378 1.03495 1.04226 1.20643 0.96537 0.97462 0.81738 0.86835 1.44740 1.71491 1.14541 1.07469 1.15946 0.78128 0.84598 0.80807 1.90886 1.58958 1.15822 1.85348 1.45076 1.70488 1.14620 1.08622 1.21168 1.00689 0.94494 0.81324 1.21489 1.00964 0.98008 0.93437 1.19460 0.96589 0.95873 0.93024 1.21482 1.43612 0.97133 0.94760 0.94575 1.25994 0.94395 1.02622 0.96217 1.70070 1.47934 1.37863 1.03338 0.85681 0.78577 0.79889 0.78665 1.19181 1.21080 1.16999 1.20617 0.79462 0.84048 0.85046 1.90726 1.39010 1.27550 1.86945 1.45866 1.53762 1.32542 1.04104 1.19544 0.99447 0.95216 0.77420 1.22174 0.87892 1.01679 0.98659 1.22018 1.02649 0.98633 0.97311 1.22224 0.96018 1.04825 1.02031 1.24878 1.02151 0.91496 0.90847 1.84043 1.37154 1.51493 1.35770 0.91477 0.92007 0.88442 0.75153 0.75450 0.92541 0.92242 0.91749 0.91939 0.95981 0.95999 0.92544 0.74557 0.87820 0.89866 0.82210 0.81499 0.74701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.38 71.98 0.68 -1.42 16 2 C 0.15 2.52 2.98 44.24 0.13 2.65 16 3 H 0.11 2.08 7.58 -2.39 -0.02 2.06 16 4 N -0.72 -15.71 4.96 -461.41 -2.29 -18.00 16 5 C 0.71 20.07 8.53 179.06 1.53 21.60 16 6 O -0.63 -22.23 16.01 -4.01 -0.06 -22.29 16 7 N -0.73 -19.92 5.56 -478.52 -2.66 -22.58 16 8 C 0.15 4.77 5.67 86.38 0.49 5.26 16 9 C -0.10 -3.71 5.27 30.60 0.16 -3.55 16 10 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 11 C -0.53 -30.51 9.66 25.60 0.25 -30.26 16 12 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 13 C 0.00 0.26 5.47 84.65 0.46 0.72 16 14 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 15 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 19 C 0.52 8.71 7.22 87.65 0.63 9.35 16 20 O -0.56 -13.23 15.84 -3.04 -0.05 -13.27 16 21 N -0.71 -7.75 5.44 -466.80 -2.54 -10.29 16 22 C 0.21 2.30 6.20 85.64 0.53 2.83 16 23 C -0.05 -0.60 6.69 24.84 0.17 -0.43 16 24 C -0.19 -1.84 10.81 22.19 0.24 -1.60 16 25 C -0.23 -1.85 10.91 22.19 0.24 -1.61 16 26 C -0.03 -0.19 12.09 66.97 0.81 0.62 16 27 O -0.19 -2.25 10.65 -2.45 -0.03 -2.27 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 0.74 7.57 -2.39 -0.02 0.72 16 31 H 0.41 8.09 7.80 -92.71 -0.72 7.37 16 32 H 0.41 9.08 8.49 -92.71 -0.79 8.29 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 38 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.42 2.84 7.88 -92.70 -0.73 2.11 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.24 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -78.11 385.25 -0.27 -78.38 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -1.27 Total: 19.73 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 6.44 Total: 3.74 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -7.19 Total: -110.48 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.14 Total: -37.84 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -78.11 -0.27 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170881399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.927 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds