Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 114.00361 * 2 1 4 4 C 1.53001 * 109.47422 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47207 * 64.99662 * 4 3 2 6 6 C 1.35760 * 116.99545 * 180.02562 * 5 4 3 7 7 C 1.38902 * 119.60257 * 179.72826 * 6 5 4 8 8 C 1.38335 * 119.17976 * 179.79196 * 7 6 5 9 9 C 1.39363 * 118.42542 * 0.47298 * 8 7 6 10 10 N 1.40191 * 120.42160 * 179.72257 * 9 8 7 11 11 C 1.34774 * 119.99974 * 325.06437 * 10 9 8 12 12 O 1.21597 * 120.00329 * 4.64190 * 11 10 9 13 13 N 1.34778 * 119.99694 * 184.63501 * 11 10 9 14 14 C 1.46492 * 120.00195 * 0.02562 * 13 11 10 15 15 C 1.46503 * 119.99667 * 179.97438 * 13 11 10 16 16 H 1.08996 * 109.47397 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46915 * 240.00221 * 15 13 11 18 18 C 1.50706 * 109.46814 * 120.00870 * 15 13 11 19 19 H 1.07997 * 120.00014 * 359.97438 * 18 15 13 20 20 C 1.37876 * 119.99805 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00097 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.47246 * 89.99966 * 22 20 18 24 24 H 1.48497 * 109.47177 * 210.00331 * 22 20 18 25 25 H 1.48505 * 109.47137 * 329.99896 * 22 20 18 26 26 C 1.38640 * 119.15147 * 359.75083 * 9 8 7 27 27 N 1.31952 * 120.74372 * 0.02562 * 26 9 8 28 28 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47346 * 300.00126 * 1 2 3 30 30 H 1.09002 * 109.47056 * 59.99752 * 1 2 3 31 31 H 1.09001 * 109.46815 * 60.00110 * 3 2 1 32 32 H 1.09001 * 109.46653 * 299.99871 * 3 2 1 33 33 H 1.09001 * 109.47215 * 185.00106 * 4 3 2 34 34 H 1.09005 * 109.46807 * 304.99789 * 4 3 2 35 35 H 1.07997 * 120.40991 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.78413 * 180.24061 * 8 7 6 37 37 H 0.96995 * 119.99816 * 145.06270 * 10 9 8 38 38 H 1.09001 * 109.47536 * 89.99073 * 14 13 11 39 39 H 1.08994 * 109.47396 * 209.99546 * 14 13 11 40 40 H 1.09004 * 109.47195 * 329.99637 * 14 13 11 41 41 H 1.09003 * 109.46745 * 180.02562 * 17 15 13 42 42 H 1.08996 * 109.47483 * 300.00432 * 17 15 13 43 43 H 1.08992 * 109.46887 * 60.00686 * 17 15 13 44 44 H 0.97000 * 119.99840 * 180.02562 * 21 20 18 45 45 H 1.08008 * 119.63029 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3005 0.3979 -1.3834 7 6 5.7772 -0.1907 -2.5478 8 6 7.1401 -0.3676 -2.7050 9 6 7.9856 0.0457 -1.6771 10 7 9.3733 -0.1189 -1.7899 11 6 9.8746 -1.1968 -2.4250 12 8 9.1256 -1.9825 -2.9731 13 7 11.2061 -1.4038 -2.4527 14 6 12.1083 -0.4576 -1.7920 15 6 11.7509 -2.5758 -3.1425 16 1 10.9345 -3.1585 -3.5690 17 6 12.5278 -3.4387 -2.1460 18 6 12.6752 -2.1254 -4.2443 19 1 12.8399 -1.0716 -4.4140 20 6 13.3106 -3.0587 -5.0357 21 7 13.1096 -4.3419 -4.8295 22 14 14.4557 -2.5004 -6.4019 23 1 15.8367 -2.3764 -5.8705 24 1 14.4363 -3.4972 -7.5024 25 1 14.0042 -1.1835 -6.9190 26 6 7.4369 0.6212 -0.5414 27 7 6.1317 0.7782 -0.4282 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.9786 2.1765 0.0889 34 1 3.8514 0.5682 0.8410 35 1 5.0924 -0.5028 -3.3224 36 1 7.5391 -0.8188 -3.6014 37 1 9.9725 0.5429 -1.4110 38 1 12.2656 -0.7665 -0.7585 39 1 13.0641 -0.4408 -2.3156 40 1 11.6666 0.5388 -1.8101 41 1 12.9336 -4.3104 -2.6594 42 1 13.3442 -2.8558 -1.7198 43 1 11.8593 -3.7644 -1.3492 44 1 13.5569 -4.9984 -5.3860 45 1 8.0850 0.9439 0.2601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176526247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = -57.855633 kcal Electronic energy + Delta-G solvation = -26771.980521 eV Core-core repulsion = 22791.244119 eV Total energy + Delta-G solvation = -3980.736402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80585 -39.66060 -38.44975 -37.44519 -35.61316 -34.43395 -32.86271 -32.15336 -30.96500 -29.63652 -28.28643 -26.64981 -26.19130 -25.24252 -24.23885 -23.21592 -22.46271 -21.16863 -19.31000 -18.54757 -17.96688 -17.13864 -16.98438 -16.66290 -16.17135 -16.00642 -15.55916 -15.27413 -15.17686 -14.88456 -14.34804 -14.27395 -13.60141 -13.47939 -13.31720 -13.14645 -12.67918 -12.65666 -12.56594 -12.51605 -11.89297 -11.68801 -11.63781 -11.56327 -11.15436 -11.09412 -10.85986 -10.71799 -10.34434 -10.29747 -10.19462 -10.05720 -9.76942 -9.56113 -9.24364 -9.08122 -8.45981 -7.91612 -7.53611 -6.09846 -4.18078 1.20198 1.41403 2.91587 3.16584 3.24596 3.32350 3.35258 3.41486 3.63248 3.98870 4.29406 4.34737 4.48887 4.64088 4.82210 4.92283 4.96873 5.02070 5.04895 5.12910 5.21421 5.22388 5.35106 5.37607 5.47416 5.55211 5.70922 5.86816 5.92017 6.17694 6.28117 6.42137 6.66603 6.77294 6.78303 6.88470 6.98215 7.10977 7.31028 7.42341 7.64893 7.77320 7.87213 8.03206 8.17750 8.57265 8.82323 9.13909 9.48738 10.95361 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.002140 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.596127 B =13081.171770 C =13371.319254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.074 3.926 5 O -0.301 6.301 6 C 0.293 3.707 7 C -0.166 4.166 8 C -0.043 4.043 9 C 0.097 3.903 10 N -0.689 5.689 11 C 0.697 3.303 12 O -0.581 6.581 13 N -0.602 5.602 14 C 0.084 3.916 15 C 0.272 3.728 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.102 3.898 27 N -0.524 5.524 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.142 0.858 36 H 0.162 0.838 37 H 0.404 0.596 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.029 0.971 43 H 0.011 0.989 44 H 0.264 0.736 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.294 13.464 10.910 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.016 4.016 4 C -0.001 4.001 5 O -0.208 6.208 6 C 0.114 3.886 7 C -0.188 4.188 8 C -0.071 4.071 9 C -0.002 4.002 10 N -0.340 5.340 11 C 0.399 3.601 12 O -0.459 6.459 13 N -0.336 5.336 14 C -0.061 4.061 15 C 0.172 3.828 16 H 0.083 0.917 17 C -0.205 4.205 18 C -0.566 4.566 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.524 5.524 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.056 4.056 27 N -0.248 5.248 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.179 0.821 37 H 0.241 0.759 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.048 0.952 43 H 0.030 0.970 44 H 0.074 0.926 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.123 12.782 10.995 24.031 hybrid contribution 1.273 0.590 -0.979 1.711 sum -15.850 13.372 10.016 23.030 Atomic orbital electron populations 1.22756 0.80968 1.02988 0.99857 1.87993 1.19710 1.27221 1.95381 1.22653 0.92066 0.85671 1.01201 1.22578 0.92264 0.98821 0.86462 1.86281 1.18006 1.76990 1.39566 1.19700 0.83669 0.94168 0.91090 1.21019 0.95760 1.04037 0.97940 1.21764 0.91390 0.95002 0.98913 1.18430 0.84098 1.02628 0.95048 1.42813 1.04260 1.25552 1.61397 1.15995 0.83500 0.80889 0.79744 1.90862 1.57521 1.47228 1.50243 1.47614 1.02389 1.27818 1.55784 1.21559 0.96453 0.90916 0.97128 1.18922 0.94157 0.80612 0.89132 0.91662 1.22101 0.98481 1.02351 0.97594 1.21315 1.26870 0.93214 1.15199 0.92240 1.24892 0.96700 0.94827 0.97381 1.69878 1.42957 1.00130 1.39461 0.86479 0.80764 0.78485 0.81551 1.20632 1.21093 1.19968 1.22056 0.89757 0.98933 0.94850 1.67202 1.04487 1.22920 1.30176 0.89486 0.94145 0.93973 0.91194 0.92243 0.90181 0.90818 0.84015 0.82105 0.75885 0.93714 0.89577 0.93503 0.88727 0.95166 0.96959 0.92626 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.10 10.67 -40.08 -0.43 -4.53 16 3 C 0.06 0.51 6.32 37.16 0.23 0.74 16 4 C 0.07 0.77 5.69 37.16 0.21 0.98 16 5 O -0.30 -4.05 10.08 -23.84 -0.24 -4.29 16 6 C 0.29 4.23 7.49 -17.15 -0.13 4.10 16 7 C -0.17 -2.41 10.04 -39.30 -0.39 -2.80 16 8 C -0.04 -0.69 8.80 -39.13 -0.34 -1.03 16 9 C 0.10 1.46 6.32 -83.47 -0.53 0.93 16 10 N -0.69 -10.58 5.24 -14.10 -0.07 -10.65 16 11 C 0.70 14.19 8.14 -86.92 -0.71 13.49 16 12 O -0.58 -14.00 13.15 5.28 0.07 -13.93 16 13 N -0.60 -12.41 2.75 -181.00 -0.50 -12.90 16 14 C 0.08 1.30 9.24 59.84 0.55 1.86 16 15 C 0.27 6.79 2.64 -69.07 -0.18 6.61 16 16 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 17 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 18 C -0.53 -13.88 7.99 -34.44 -0.28 -14.15 16 19 H 0.06 1.53 7.34 -52.49 -0.39 1.15 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 22 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.10 1.33 11.11 -17.35 -0.19 1.14 16 27 N -0.52 -7.28 9.20 -13.18 -0.12 -7.40 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.16 2.89 6.32 -52.49 -0.33 2.56 16 37 H 0.40 4.80 6.52 -40.82 -0.27 4.54 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.44 7.02 -51.93 -0.36 1.08 16 40 H 0.05 0.56 6.30 -51.93 -0.33 0.24 16 41 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 42 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -32.70 374.07 -6.98 -39.68 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.53 Total: 5.10 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -0.40 Total: 11.70 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.07 Total: -55.03 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.60 Total: -22.76 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.70 -6.98 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176526247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.179 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds