Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 114.00361 * 2 1 4 4 C 1.53001 * 109.47422 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47207 * 64.99662 * 4 3 2 6 6 C 1.35760 * 116.99545 * 180.02562 * 5 4 3 7 7 C 1.38902 * 119.60257 * 179.72826 * 6 5 4 8 8 C 1.38335 * 119.17976 * 179.79196 * 7 6 5 9 9 C 1.39363 * 118.42542 * 0.47298 * 8 7 6 10 10 N 1.40191 * 120.42160 * 179.72257 * 9 8 7 11 11 C 1.34774 * 119.99974 * 325.06437 * 10 9 8 12 12 O 1.21597 * 120.00329 * 4.64190 * 11 10 9 13 13 N 1.34778 * 119.99694 * 184.63501 * 11 10 9 14 14 C 1.46492 * 120.00195 * 0.02562 * 13 11 10 15 15 C 1.46503 * 119.99667 * 179.97438 * 13 11 10 16 16 H 1.08996 * 109.47397 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46915 * 240.00221 * 15 13 11 18 18 C 1.50706 * 109.46814 * 120.00870 * 15 13 11 19 19 H 1.07997 * 120.00014 * 359.97438 * 18 15 13 20 20 C 1.37876 * 119.99805 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00097 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.47246 * 89.99966 * 22 20 18 24 24 H 1.48497 * 109.47177 * 210.00331 * 22 20 18 25 25 H 1.48505 * 109.47137 * 329.99896 * 22 20 18 26 26 C 1.38640 * 119.15147 * 359.75083 * 9 8 7 27 27 N 1.31952 * 120.74372 * 0.02562 * 26 9 8 28 28 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47346 * 300.00126 * 1 2 3 30 30 H 1.09002 * 109.47056 * 59.99752 * 1 2 3 31 31 H 1.09001 * 109.46815 * 60.00110 * 3 2 1 32 32 H 1.09001 * 109.46653 * 299.99871 * 3 2 1 33 33 H 1.09001 * 109.47215 * 185.00106 * 4 3 2 34 34 H 1.09005 * 109.46807 * 304.99789 * 4 3 2 35 35 H 1.07997 * 120.40991 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.78413 * 180.24061 * 8 7 6 37 37 H 0.96995 * 119.99816 * 145.06270 * 10 9 8 38 38 H 1.09001 * 109.47536 * 89.99073 * 14 13 11 39 39 H 1.08994 * 109.47396 * 209.99546 * 14 13 11 40 40 H 1.09004 * 109.47195 * 329.99637 * 14 13 11 41 41 H 1.09003 * 109.46745 * 180.02562 * 17 15 13 42 42 H 1.08996 * 109.47483 * 300.00432 * 17 15 13 43 43 H 1.08992 * 109.46887 * 60.00686 * 17 15 13 44 44 H 0.97000 * 119.99840 * 180.02562 * 21 20 18 45 45 H 1.08008 * 119.63029 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3005 0.3979 -1.3834 7 6 5.7772 -0.1907 -2.5478 8 6 7.1401 -0.3676 -2.7050 9 6 7.9856 0.0457 -1.6771 10 7 9.3733 -0.1189 -1.7899 11 6 9.8746 -1.1968 -2.4250 12 8 9.1256 -1.9825 -2.9731 13 7 11.2061 -1.4038 -2.4527 14 6 12.1083 -0.4576 -1.7920 15 6 11.7509 -2.5758 -3.1425 16 1 10.9345 -3.1585 -3.5690 17 6 12.5278 -3.4387 -2.1460 18 6 12.6752 -2.1254 -4.2443 19 1 12.8399 -1.0716 -4.4140 20 6 13.3106 -3.0587 -5.0357 21 7 13.1096 -4.3419 -4.8295 22 14 14.4557 -2.5004 -6.4019 23 1 15.8367 -2.3764 -5.8705 24 1 14.4363 -3.4972 -7.5024 25 1 14.0042 -1.1835 -6.9190 26 6 7.4369 0.6212 -0.5414 27 7 6.1317 0.7782 -0.4282 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.9786 2.1765 0.0889 34 1 3.8514 0.5682 0.8410 35 1 5.0924 -0.5028 -3.3224 36 1 7.5391 -0.8188 -3.6014 37 1 9.9725 0.5429 -1.4110 38 1 12.2656 -0.7665 -0.7585 39 1 13.0641 -0.4408 -2.3156 40 1 11.6666 0.5388 -1.8101 41 1 12.9336 -4.3104 -2.6594 42 1 13.3442 -2.8558 -1.7198 43 1 11.8593 -3.7644 -1.3492 44 1 13.5569 -4.9984 -5.3860 45 1 8.0850 0.9439 0.2601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176526247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = -81.531113 kcal Electronic energy + Delta-G solvation = -26773.007166 eV Core-core repulsion = 22791.244119 eV Total energy + Delta-G solvation = -3981.763048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02759 -41.00268 -39.37455 -38.36199 -37.26287 -35.88447 -34.69612 -33.30250 -31.95711 -31.19794 -29.53916 -27.60248 -27.27843 -27.23002 -25.26340 -24.50130 -23.39184 -22.73262 -20.83143 -19.65960 -19.33503 -18.56432 -18.04593 -17.87183 -17.64425 -16.97018 -16.76480 -16.43166 -16.35808 -16.03724 -15.97290 -15.44126 -14.93024 -14.64543 -14.46319 -14.41025 -14.32350 -13.95073 -13.70299 -13.48239 -13.24999 -13.07642 -12.86118 -12.70151 -12.62775 -12.53259 -12.46136 -12.18259 -12.11187 -12.01675 -11.51762 -11.25357 -11.12578 -10.83698 -10.65245 -10.52344 -10.40700 -9.43311 -8.85766 -8.12369 -6.28720 0.08644 0.22089 1.42977 1.44679 1.53889 1.66928 2.05742 2.14646 2.43430 2.78363 2.82873 3.05139 3.15703 3.32880 3.87030 3.94755 4.00108 4.11478 4.19463 4.36265 4.43733 4.45209 4.53785 4.57380 4.62811 4.68569 4.72178 4.75361 4.83773 4.87503 4.92510 5.00671 5.08453 5.09066 5.21458 5.45873 5.53713 5.64405 5.68433 5.96891 6.17191 6.17809 6.24245 6.28755 6.76123 6.79057 7.07804 7.38133 7.61993 8.91649 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.002140 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.596127 B =13081.171770 C =13371.319254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.061 3.939 4 C 0.068 3.932 5 O -0.312 6.312 6 C 0.293 3.707 7 C -0.174 4.174 8 C -0.058 4.058 9 C 0.077 3.923 10 N -0.665 5.665 11 C 0.692 3.308 12 O -0.628 6.628 13 N -0.610 5.610 14 C 0.078 3.922 15 C 0.278 3.722 16 H 0.011 0.989 17 C -0.132 4.132 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.271 1.271 26 C 0.123 3.877 27 N -0.524 5.524 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.423 0.577 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.018 0.982 44 H 0.264 0.736 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.271 16.149 12.611 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.015 4.015 4 C -0.007 4.007 5 O -0.220 6.220 6 C 0.114 3.886 7 C -0.195 4.195 8 C -0.086 4.086 9 C -0.021 4.021 10 N -0.318 5.318 11 C 0.393 3.607 12 O -0.509 6.509 13 N -0.343 5.343 14 C -0.064 4.064 15 C 0.175 3.825 16 H 0.029 0.971 17 C -0.190 4.190 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.186 4.186 21 N -0.556 5.556 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.196 1.196 26 C -0.035 4.035 27 N -0.248 5.248 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.168 0.832 36 H 0.151 0.849 37 H 0.264 0.736 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.115 15.541 12.744 26.398 hybrid contribution 1.120 -0.208 -1.443 1.838 sum -15.995 15.333 11.301 24.873 Atomic orbital electron populations 1.22919 0.79280 1.03683 1.01136 1.87935 1.21725 1.28681 1.95683 1.22783 0.90505 0.85232 1.02986 1.22864 0.93856 0.99106 0.84827 1.86281 1.17344 1.77134 1.41200 1.19810 0.84317 0.93595 0.90927 1.21069 0.95323 1.04403 0.98717 1.21611 0.92443 0.95818 0.98724 1.18576 0.83651 1.04065 0.95838 1.42381 1.04749 1.24341 1.60327 1.16162 0.83151 0.81562 0.79791 1.90839 1.58664 1.49247 1.52198 1.47450 1.03248 1.27693 1.55946 1.21839 0.95260 0.91764 0.97569 1.18477 0.92226 0.82017 0.89756 0.97113 1.21880 0.98798 1.01297 0.97067 1.21578 1.26783 0.93361 1.15730 0.91894 1.25731 0.98302 0.94873 0.99677 1.70026 1.43947 1.01181 1.40443 0.85446 0.79194 0.77819 0.78466 1.19258 1.21413 1.19593 1.22582 0.89780 0.96611 0.94550 1.67336 1.04697 1.22941 1.29802 0.89232 0.92314 0.93183 0.88167 0.91528 0.88584 0.91708 0.83153 0.84880 0.73587 0.91355 0.90675 0.89568 0.91375 0.93284 0.96295 0.92688 0.78547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.48 10.67 -144.35 -1.54 -10.02 16 3 C 0.06 0.90 6.32 71.98 0.45 1.35 16 4 C 0.07 1.30 5.69 71.98 0.41 1.71 16 5 O -0.31 -8.11 10.08 -86.23 -0.87 -8.98 16 6 C 0.29 8.17 7.49 84.80 0.63 8.81 16 7 C -0.17 -5.11 10.04 22.45 0.23 -4.88 16 8 C -0.06 -1.92 8.80 22.56 0.20 -1.72 16 9 C 0.08 2.23 6.32 38.17 0.24 2.47 16 10 N -0.67 -19.44 5.24 -316.77 -1.66 -21.09 16 11 C 0.69 28.36 8.14 179.05 1.46 29.82 16 12 O -0.63 -31.79 13.15 -4.02 -0.05 -31.84 16 13 N -0.61 -24.96 2.75 -844.83 -2.33 -27.28 16 14 C 0.08 2.24 9.24 127.77 1.18 3.42 16 15 C 0.28 14.23 2.64 44.25 0.12 14.35 16 16 H 0.01 0.67 6.90 -2.39 -0.02 0.66 16 17 C -0.13 -6.27 8.97 71.98 0.65 -5.63 16 18 C -0.54 -28.52 7.99 25.60 0.20 -28.32 16 19 H 0.06 3.23 7.34 -2.91 -0.02 3.21 16 20 C 0.01 0.74 5.30 84.65 0.45 1.19 16 21 N -0.92 -52.50 11.32 21.45 0.24 -52.26 16 22 Si 0.97 42.58 29.54 68.60 2.03 44.61 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C 0.12 2.88 11.11 84.77 0.94 3.82 16 27 N -0.52 -13.44 9.20 -308.45 -2.84 -16.27 16 28 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 34 H 0.06 1.34 8.10 -2.38 -0.02 1.32 16 35 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.13 5.15 6.32 -2.91 -0.02 5.13 16 37 H 0.42 8.69 6.52 -92.71 -0.60 8.09 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.35 7.02 -2.39 -0.02 2.34 16 40 H 0.09 1.76 6.30 -2.39 -0.02 1.74 16 41 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 42 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.35 374.07 1.80 -72.55 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.40 Total: 22.64 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 8.41 Total: 27.95 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -6.58 Total: -116.91 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.46 Total: -50.84 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.35 1.80 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176526247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.981 kcal (2) G-P(sol) polarization free energy of solvation -74.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds