Wall clock time and date at job start Tue Mar 31 2020 13:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47504 * 2 1 4 4 H 1.08994 * 109.47420 * 54.99834 * 3 2 1 5 5 C 1.53000 * 109.47212 * 175.00170 * 3 2 1 6 6 O 1.42897 * 109.47318 * 54.99665 * 5 3 2 7 7 N 1.46507 * 109.46905 * 294.99736 * 3 2 1 8 8 C 1.34776 * 119.99831 * 154.99695 * 7 3 2 9 9 O 1.21583 * 120.00148 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99965 * 180.02562 * 8 7 3 11 11 C 1.39578 * 120.00047 * 180.02562 * 10 8 7 12 12 N 1.32262 * 119.72833 * 0.02562 * 11 10 8 13 13 C 1.31973 * 121.69358 * 180.02562 * 12 11 10 14 14 C 1.38068 * 120.94934 * 359.97438 * 13 12 11 15 15 C 1.38795 * 119.35498 * 0.02562 * 14 13 12 16 16 C 1.38779 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35985 * 120.49220 * 179.97438 * 16 15 14 18 18 C 1.42902 * 117.00359 * 0.02562 * 17 16 15 19 19 C 1.53002 * 109.47051 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.46898 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00251 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99954 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00150 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99943 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46830 * 90.00596 * 24 22 20 26 26 H 1.48496 * 109.47058 * 210.00297 * 24 22 20 27 27 H 1.48499 * 109.46949 * 330.00693 * 24 22 20 28 28 H 1.08994 * 109.47897 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47303 * 300.00364 * 1 2 3 30 30 H 1.09008 * 109.46956 * 59.99961 * 1 2 3 31 31 H 1.09000 * 109.46860 * 239.99520 * 2 1 3 32 32 H 1.08999 * 109.47000 * 119.99767 * 2 1 3 33 33 H 1.09001 * 109.46978 * 174.99630 * 5 3 2 34 34 H 1.08999 * 109.46871 * 294.99547 * 5 3 2 35 35 H 0.96701 * 113.99924 * 180.02562 * 6 5 3 36 36 H 0.97004 * 119.99969 * 335.00689 * 7 3 2 37 37 H 0.97004 * 119.99841 * 0.02562 * 10 8 7 38 38 H 1.07996 * 119.52734 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.32733 * 180.02562 * 14 13 12 40 40 H 1.08006 * 120.77026 * 179.72758 * 15 14 13 41 41 H 1.09004 * 109.47071 * 300.00185 * 18 17 16 42 42 H 1.09001 * 109.46914 * 59.99961 * 18 17 16 43 43 H 1.08999 * 109.47141 * 299.99424 * 19 18 17 44 44 H 1.08999 * 109.46996 * 59.99992 * 19 18 17 45 45 H 0.96996 * 119.99954 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5649 1.4442 0.1257 6 8 4.1293 0.6402 -0.9121 7 7 1.6525 2.0974 -1.2519 8 6 1.5257 3.4383 -1.2997 9 8 1.7334 4.1045 -0.3040 10 7 1.1687 4.0409 -2.4512 11 6 1.0379 5.4296 -2.5009 12 7 1.2661 6.1491 -1.4148 13 6 1.1534 7.4640 -1.4179 14 6 0.7908 8.1429 -2.5641 15 6 0.5415 7.4288 -3.7278 16 6 0.6677 6.0471 -3.6954 17 8 0.4328 5.3064 -4.8113 18 6 0.0575 6.0156 -5.9937 19 6 -0.1637 5.0219 -7.1360 20 6 -0.5601 5.7699 -8.3827 21 1 -0.6454 6.8464 -8.3626 22 6 -0.8129 5.0800 -9.5494 23 7 -0.7086 3.7693 -9.5741 24 14 -1.3051 6.0072 -11.0948 25 1 -0.0874 6.3678 -11.8645 26 1 -2.1818 5.1474 -11.9297 27 1 -2.0370 7.2432 -10.7184 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9356 2.4653 0.0365 34 1 3.8499 1.0376 1.0960 35 1 5.0951 0.5954 -0.8937 36 1 1.4871 1.5659 -2.0464 37 1 1.0027 3.5093 -3.2455 38 1 1.3476 8.0170 -0.5108 39 1 0.7020 9.2192 -2.5554 40 1 0.2521 7.9362 -4.6363 41 1 -0.8642 6.5675 -5.8092 42 1 0.8499 6.7126 -6.2663 43 1 0.7578 4.4698 -7.3207 44 1 -0.9563 4.3253 -6.8631 45 1 -0.8868 3.2840 -10.3948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186441632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:33 Heat of formation + Delta-G solvation = -80.954781 kcal Electronic energy + Delta-G solvation = -27070.417979 eV Core-core repulsion = 23088.679923 eV Total energy + Delta-G solvation = -3981.738056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89734 -39.71652 -37.91897 -37.48012 -35.39652 -34.61179 -33.46092 -32.42682 -31.47880 -30.49193 -29.22790 -28.37839 -25.40073 -24.09695 -23.48752 -22.76901 -21.50881 -20.76087 -20.49202 -18.76067 -18.01316 -17.61580 -17.37717 -16.18571 -15.98935 -15.95721 -15.77559 -15.34973 -14.72097 -14.59466 -14.54292 -14.53662 -14.02662 -13.87149 -13.76156 -13.46887 -12.82218 -12.75079 -12.52440 -12.39634 -11.98621 -11.90465 -11.61964 -11.27764 -11.07711 -11.05203 -10.98484 -10.67158 -10.66950 -10.36022 -10.17672 -10.02840 -9.76798 -9.40413 -9.21924 -9.04990 -9.00945 -8.51486 -7.58969 -6.17166 -4.22059 1.31182 1.50137 2.49884 3.23091 3.25813 3.29263 3.31553 3.56777 3.95582 4.06766 4.12509 4.34595 4.48347 4.71749 4.78862 4.91789 4.99642 5.11735 5.14215 5.19719 5.26591 5.29577 5.42311 5.49064 5.51423 5.63425 5.73381 5.87757 5.91308 5.92216 6.06950 6.09974 6.22390 6.41419 6.46066 6.56544 6.63758 6.90615 7.37310 7.38530 7.54016 7.65750 7.78736 7.89970 8.15388 8.30332 8.68396 8.83176 9.42857 10.94262 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.002857 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.325941 B = 9798.995501 C =11561.417328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.169 3.831 4 H 0.100 0.900 5 C 0.061 3.939 6 O -0.568 6.568 7 N -0.733 5.733 8 C 0.697 3.303 9 O -0.541 6.541 10 N -0.661 5.661 11 C 0.348 3.652 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.164 4.164 15 C -0.147 4.147 16 C 0.064 3.936 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.377 0.623 36 H 0.399 0.601 37 H 0.420 0.580 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -3.073 19.287 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C 0.063 3.937 4 H 0.118 0.882 5 C -0.019 4.019 6 O -0.374 6.374 7 N -0.390 5.390 8 C 0.397 3.603 9 O -0.413 6.413 10 N -0.311 5.311 11 C 0.114 3.886 12 N -0.157 5.157 13 C -0.081 4.081 14 C -0.185 4.185 15 C -0.173 4.173 16 C 0.012 3.988 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.224 0.776 36 H 0.234 0.766 37 H 0.258 0.742 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.868 -3.419 20.701 21.787 hybrid contribution -0.085 0.753 -2.435 2.550 sum 5.783 -2.666 18.266 19.344 Atomic orbital electron populations 1.21797 0.95321 1.01715 1.02327 1.21711 0.96188 0.94928 1.03573 1.20950 0.92074 0.93503 0.87128 0.88178 1.22702 0.94475 0.94712 0.89972 1.86464 1.25233 1.72129 1.53529 1.45121 1.74778 1.04947 1.14105 1.15970 0.78674 0.82099 0.83544 1.91007 1.54322 1.62905 1.33068 1.42504 1.70570 1.04496 1.13481 1.17490 0.99205 0.84055 0.87845 1.67630 1.15147 1.07638 1.25244 1.22404 0.98668 0.88920 0.98084 1.21873 1.02329 1.01139 0.93197 1.21583 1.03123 0.92228 1.00404 1.19549 1.00242 0.91169 0.87812 1.86101 1.82694 1.36530 1.17581 1.23382 0.97992 0.97299 0.82086 1.19122 0.98416 0.94136 0.89365 1.20950 1.47941 0.93457 0.94282 0.92347 1.24979 0.95146 0.94904 0.99065 1.69961 1.48473 1.06308 1.27925 0.86488 0.78577 0.79670 0.82668 1.20468 1.21018 1.19746 0.92525 0.92705 0.92382 0.90391 0.90621 0.92865 0.93001 0.77633 0.76643 0.74243 0.82721 0.84877 0.83788 0.92981 0.92981 0.95372 0.95369 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.80 37.15 0.36 -0.87 16 2 C -0.13 -1.00 5.19 -26.74 -0.14 -1.14 16 3 C 0.17 1.67 2.37 -67.93 -0.16 1.51 16 4 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 5 C 0.06 0.56 6.85 37.16 0.25 0.81 16 6 O -0.57 -5.12 12.83 -35.23 -0.45 -5.57 16 7 N -0.73 -8.38 4.48 -58.67 -0.26 -8.64 16 8 C 0.70 10.54 8.50 -86.92 -0.74 9.80 16 9 O -0.54 -9.82 14.26 5.29 0.08 -9.75 16 10 N -0.66 -10.14 5.40 -15.68 -0.08 -10.22 16 11 C 0.35 5.96 7.45 -154.45 -1.15 4.81 16 12 N -0.44 -7.60 7.87 -12.23 -0.10 -7.69 16 13 C 0.08 1.06 11.17 -17.55 -0.20 0.86 16 14 C -0.16 -2.09 10.10 -39.44 -0.40 -2.49 16 15 C -0.15 -2.18 9.14 -39.18 -0.36 -2.54 16 16 C 0.06 1.09 6.72 -38.92 -0.26 0.83 16 17 O -0.32 -5.92 9.39 -19.69 -0.18 -6.11 16 18 C 0.07 1.32 4.70 37.16 0.17 1.50 16 19 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.17 9.11 -34.44 -0.31 -14.48 16 21 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 24 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.52 7.75 -51.92 -0.40 0.11 16 31 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.38 1.97 9.12 45.56 0.42 2.38 16 36 H 0.40 3.99 8.62 -40.82 -0.35 3.64 16 37 H 0.42 5.81 8.06 -40.82 -0.33 5.48 16 38 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.14 1.98 6.44 -52.48 -0.34 1.64 16 41 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 42 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -33.61 380.10 -8.68 -42.28 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.95 Total: 8.45 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.17 Total: 0.70 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.29 Total: -51.45 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.56 Total: -21.43 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.61 -8.68 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186441632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.670 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds