Wall clock time and date at job start Tue Mar 31 2020 13:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46727 * 2 1 4 4 H 1.08995 * 109.47332 * 305.00045 * 3 2 1 5 5 C 1.53008 * 109.46735 * 185.00154 * 3 2 1 6 6 O 1.42906 * 109.46756 * 304.99856 * 5 3 2 7 7 N 1.46496 * 109.47097 * 65.00364 * 3 2 1 8 8 C 1.34775 * 119.99986 * 274.99622 * 7 3 2 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 3 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 3 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47574 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99892 * 24 22 20 27 27 H 1.48499 * 109.47067 * 329.99541 * 24 22 20 28 28 H 1.08992 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46883 * 299.99930 * 1 2 3 30 30 H 1.09000 * 109.46918 * 59.99838 * 1 2 3 31 31 H 1.08997 * 109.46729 * 240.00144 * 2 1 3 32 32 H 1.08995 * 109.47235 * 119.99843 * 2 1 3 33 33 H 1.08992 * 109.47023 * 64.99666 * 5 3 2 34 34 H 1.08997 * 109.46834 * 185.00428 * 5 3 2 35 35 H 0.96701 * 113.99037 * 179.97438 * 6 5 3 36 36 H 0.97000 * 120.00232 * 94.99664 * 7 3 2 37 37 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 38 38 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 39 39 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 40 40 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1258 6 8 4.1293 0.6404 0.9121 7 7 1.6525 2.0975 1.2518 8 6 0.4352 2.6643 1.3670 9 8 -0.3412 2.6326 0.4318 10 7 0.0788 3.2673 2.5185 11 6 -1.1818 3.8549 2.6376 12 7 -2.0242 3.8122 1.6188 13 6 -3.2232 4.3593 1.6873 14 6 -3.6483 4.9969 2.8358 15 6 -2.7998 5.0608 3.9323 16 6 -1.5453 4.4759 3.8324 17 8 -0.6803 4.5144 4.8810 18 6 -1.1269 5.1763 6.0662 19 6 -0.0271 5.1174 7.1283 20 6 -0.4977 5.8160 8.3779 21 1 -1.4825 6.2582 8.4111 22 6 0.3293 5.8916 9.4785 23 7 1.5288 5.3536 9.4379 24 14 -0.2542 6.7569 11.0277 25 1 -0.9332 5.7788 11.9152 26 1 0.9118 7.3423 11.7368 27 1 -1.2052 7.8375 10.6628 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8499 1.0377 -1.0960 34 1 3.9355 2.4655 -0.0366 35 1 5.0951 0.5957 0.8936 36 1 2.2719 2.1231 1.9978 37 1 0.6983 3.2930 3.2645 38 1 -3.8815 4.3073 0.8327 39 1 -4.6315 5.4415 2.8805 40 1 -3.1089 5.5534 4.8423 41 1 -2.0223 4.6821 6.4430 42 1 -1.3555 6.2171 5.8369 43 1 0.2012 4.0766 7.3575 44 1 0.8686 5.6114 6.7516 45 1 2.1104 5.4065 10.2123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186441645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:36 Heat of formation + Delta-G solvation = -77.399639 kcal Electronic energy + Delta-G solvation = -27223.005721 eV Core-core repulsion = 23241.421827 eV Total energy + Delta-G solvation = -3981.583894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91437 -39.76905 -37.93485 -37.53227 -35.36289 -34.46417 -33.45994 -32.35496 -31.46340 -30.46348 -29.23914 -28.44471 -25.39655 -23.95344 -23.42671 -22.75848 -21.50110 -20.71118 -20.46722 -18.75177 -18.00180 -17.74840 -17.38741 -16.18847 -15.99313 -15.96980 -15.83516 -15.44454 -14.75520 -14.61969 -14.50472 -14.42369 -14.00025 -13.84502 -13.78501 -13.13859 -12.80215 -12.61309 -12.41524 -12.39528 -11.97808 -11.89280 -11.51695 -11.14850 -11.04905 -10.98385 -10.90550 -10.67017 -10.57475 -10.36496 -10.25224 -10.02485 -9.76545 -9.40235 -9.17021 -9.03274 -8.94691 -8.51429 -7.57744 -6.17223 -4.22064 1.32370 1.51185 2.51011 3.23090 3.28374 3.29269 3.31516 3.57565 3.87091 4.02591 4.11729 4.34639 4.52450 4.73390 4.76489 5.00552 5.01132 5.12422 5.15283 5.19652 5.25737 5.31129 5.47765 5.52260 5.62654 5.88557 5.88946 5.92569 5.99138 6.10089 6.18395 6.23854 6.41266 6.47229 6.53642 6.57185 6.64929 6.92484 7.24989 7.37690 7.54099 7.66256 7.80233 7.90586 8.15455 8.31970 8.71143 8.83197 9.42821 10.94230 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.002894 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.633266 B = 9674.259452 C =11673.142994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.167 3.833 4 H 0.100 0.900 5 C 0.067 3.933 6 O -0.568 6.568 7 N -0.737 5.737 8 C 0.696 3.304 9 O -0.532 6.532 10 N -0.662 5.662 11 C 0.349 3.651 12 N -0.440 5.440 13 C 0.076 3.924 14 C -0.164 4.164 15 C -0.147 4.147 16 C 0.064 3.936 17 O -0.317 6.317 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.381 0.619 36 H 0.401 0.599 37 H 0.420 0.580 38 H 0.155 0.845 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -6.772 -19.037 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.062 3.938 4 H 0.117 0.883 5 C -0.012 4.012 6 O -0.374 6.374 7 N -0.395 5.395 8 C 0.396 3.604 9 O -0.404 6.404 10 N -0.312 5.312 11 C 0.114 3.886 12 N -0.155 5.155 13 C -0.080 4.080 14 C -0.186 4.186 15 C -0.173 4.173 16 C 0.012 3.988 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.235 0.765 37 H 0.257 0.743 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.014 -7.438 -20.426 21.738 hybrid contribution 0.493 1.142 2.418 2.719 sum 0.507 -6.296 -18.008 19.084 Atomic orbital electron populations 1.21803 0.94750 1.00234 1.03367 1.21864 0.96874 0.95655 1.02393 1.20977 0.91821 0.93919 0.87077 0.88263 1.22516 0.93160 0.94619 0.90883 1.86511 1.25600 1.72195 1.53073 1.45133 1.15905 1.60912 1.17525 1.15927 0.82555 0.78829 0.83114 1.91025 1.50414 1.61668 1.37271 1.42532 1.14945 1.57261 1.16449 1.17496 0.86927 0.95862 0.88269 1.67632 1.03277 1.18223 1.26388 1.22402 0.92123 0.95907 0.97613 1.21871 1.00840 1.02038 0.93828 1.21577 0.93005 1.01913 1.00844 1.19554 0.91391 0.99080 0.88808 1.86101 1.40740 1.74088 1.21994 1.23378 1.00800 0.94645 0.81931 1.19121 0.92795 0.98679 0.90447 1.20952 1.01489 1.36799 0.97367 0.92345 1.24980 0.94793 0.95432 0.98908 1.69965 1.07914 1.44273 1.30539 0.86484 0.78339 0.79774 0.82783 1.20461 1.21026 1.19749 0.94005 0.92191 0.92242 0.91697 0.91114 0.92096 0.92826 0.77182 0.76491 0.74312 0.82739 0.84908 0.83826 0.92987 0.92988 0.95367 0.95386 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.51 37.16 0.32 -1.47 16 2 C -0.13 -1.32 5.33 -26.73 -0.14 -1.46 16 3 C 0.17 1.64 2.66 -67.93 -0.18 1.46 16 4 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 5 C 0.07 0.46 6.79 37.16 0.25 0.71 16 6 O -0.57 -4.13 12.61 -35.23 -0.44 -4.57 16 7 N -0.74 -8.41 5.02 -58.67 -0.29 -8.70 16 8 C 0.70 10.34 7.10 -86.92 -0.62 9.72 16 9 O -0.53 -9.28 11.73 5.29 0.06 -9.22 16 10 N -0.66 -10.08 5.40 -15.67 -0.08 -10.17 16 11 C 0.35 5.92 7.45 -154.43 -1.15 4.77 16 12 N -0.44 -7.49 7.87 -12.22 -0.10 -7.58 16 13 C 0.08 1.06 11.17 -17.56 -0.20 0.86 16 14 C -0.16 -2.10 10.10 -39.44 -0.40 -2.50 16 15 C -0.15 -2.18 9.14 -39.17 -0.36 -2.54 16 16 C 0.06 1.08 6.72 -38.92 -0.26 0.82 16 17 O -0.32 -5.93 9.39 -19.69 -0.18 -6.11 16 18 C 0.07 1.33 4.70 37.16 0.17 1.50 16 19 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.17 9.11 -34.44 -0.31 -14.48 16 21 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 24 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.90 5.65 -51.93 -0.29 0.61 16 30 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.79 7.73 -51.93 -0.40 0.38 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 1.18 9.12 45.56 0.42 1.59 16 36 H 0.40 4.05 8.40 -40.82 -0.34 3.71 16 37 H 0.42 5.80 8.06 -40.82 -0.33 5.47 16 38 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.14 1.98 6.44 -52.49 -0.34 1.65 16 41 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 42 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -33.33 372.95 -8.64 -41.97 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.81 Total: 8.45 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.12 Total: -0.51 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.26 Total: -51.35 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.57 Total: -19.91 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.33 -8.64 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186441645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.430 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds