Wall clock time and date at job start Tue Mar 31 2020 13:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46727 * 2 1 4 4 H 1.08995 * 109.47332 * 305.00045 * 3 2 1 5 5 C 1.53008 * 109.46735 * 185.00154 * 3 2 1 6 6 O 1.42906 * 109.46756 * 304.99856 * 5 3 2 7 7 N 1.46496 * 109.47097 * 65.00364 * 3 2 1 8 8 C 1.34775 * 119.99986 * 274.99622 * 7 3 2 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 3 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 3 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47574 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99892 * 24 22 20 27 27 H 1.48499 * 109.47067 * 329.99541 * 24 22 20 28 28 H 1.08992 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46883 * 299.99930 * 1 2 3 30 30 H 1.09000 * 109.46918 * 59.99838 * 1 2 3 31 31 H 1.08997 * 109.46729 * 240.00144 * 2 1 3 32 32 H 1.08995 * 109.47235 * 119.99843 * 2 1 3 33 33 H 1.08992 * 109.47023 * 64.99666 * 5 3 2 34 34 H 1.08997 * 109.46834 * 185.00428 * 5 3 2 35 35 H 0.96701 * 113.99037 * 179.97438 * 6 5 3 36 36 H 0.97000 * 120.00232 * 94.99664 * 7 3 2 37 37 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 38 38 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 39 39 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 40 40 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4444 -0.1258 6 8 4.1293 0.6404 0.9121 7 7 1.6525 2.0975 1.2518 8 6 0.4352 2.6643 1.3670 9 8 -0.3412 2.6326 0.4318 10 7 0.0788 3.2673 2.5185 11 6 -1.1818 3.8549 2.6376 12 7 -2.0242 3.8122 1.6188 13 6 -3.2232 4.3593 1.6873 14 6 -3.6483 4.9969 2.8358 15 6 -2.7998 5.0608 3.9323 16 6 -1.5453 4.4759 3.8324 17 8 -0.6803 4.5144 4.8810 18 6 -1.1269 5.1763 6.0662 19 6 -0.0271 5.1174 7.1283 20 6 -0.4977 5.8160 8.3779 21 1 -1.4825 6.2582 8.4111 22 6 0.3293 5.8916 9.4785 23 7 1.5288 5.3536 9.4379 24 14 -0.2542 6.7569 11.0277 25 1 -0.9332 5.7788 11.9152 26 1 0.9118 7.3423 11.7368 27 1 -1.2052 7.8375 10.6628 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8499 1.0377 -1.0960 34 1 3.9355 2.4655 -0.0366 35 1 5.0951 0.5957 0.8936 36 1 2.2719 2.1231 1.9978 37 1 0.6983 3.2930 3.2645 38 1 -3.8815 4.3073 0.8327 39 1 -4.6315 5.4415 2.8805 40 1 -3.1089 5.5534 4.8423 41 1 -2.0223 4.6821 6.4430 42 1 -1.3555 6.2171 5.8369 43 1 0.2012 4.0766 7.3575 44 1 0.8686 5.6114 6.7516 45 1 2.1104 5.4065 10.2123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186441645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:35 Heat of formation + Delta-G solvation = -102.308895 kcal Electronic energy + Delta-G solvation = -27224.085867 eV Core-core repulsion = 23241.421827 eV Total energy + Delta-G solvation = -3982.664040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.08801 -40.88885 -39.18578 -38.38592 -36.22900 -35.62223 -35.40823 -33.35713 -32.81392 -32.08029 -30.39946 -29.35524 -27.15724 -25.16249 -24.38864 -23.97503 -22.93365 -21.99644 -21.46128 -19.91154 -19.28164 -18.73479 -18.33532 -18.00320 -17.23950 -17.20389 -16.81303 -16.66192 -16.47821 -15.72762 -15.47170 -15.33984 -15.15164 -14.94543 -14.85980 -14.35422 -14.23845 -14.10191 -13.61977 -13.40914 -13.27544 -13.19756 -12.79592 -12.74088 -12.46696 -12.43152 -11.98211 -11.83265 -11.74876 -11.63278 -11.62264 -11.45600 -11.36590 -10.89454 -10.60594 -10.37851 -10.19765 -9.96923 -8.79338 -8.25492 -6.38101 0.17753 0.32687 1.42586 1.43651 1.46077 1.54578 2.13514 2.15265 2.44957 2.94291 2.97104 3.09720 3.41104 3.60922 3.80512 3.88525 4.00554 4.07006 4.16033 4.27029 4.30024 4.34786 4.49906 4.53219 4.54994 4.69159 4.74645 4.75794 4.98062 5.01381 5.05426 5.15773 5.23775 5.30549 5.32742 5.48362 5.50546 5.52989 5.61164 5.72459 5.86151 6.08443 6.36941 6.75451 6.76837 6.94431 7.19252 7.31947 7.59044 8.87191 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.002894 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.633266 B = 9674.259452 C =11673.142994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.160 3.840 4 H 0.090 0.910 5 C 0.075 3.925 6 O -0.586 6.586 7 N -0.726 5.726 8 C 0.693 3.307 9 O -0.561 6.561 10 N -0.665 5.665 11 C 0.331 3.669 12 N -0.469 5.469 13 C 0.075 3.925 14 C -0.149 4.149 15 C -0.147 4.147 16 C 0.037 3.963 17 O -0.330 6.330 18 C 0.084 3.916 19 C 0.030 3.970 20 C -0.545 4.545 21 H 0.071 0.929 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.971 3.029 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.259 1.259 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.407 0.593 37 H 0.422 0.578 38 H 0.185 0.815 39 H 0.175 0.825 40 H 0.156 0.844 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.000 1.000 44 H 0.001 0.999 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 -6.178 -19.476 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.055 3.945 4 H 0.108 0.892 5 C -0.003 4.003 6 O -0.395 6.395 7 N -0.383 5.383 8 C 0.393 3.607 9 O -0.435 6.435 10 N -0.314 5.314 11 C 0.098 3.902 12 N -0.184 5.184 13 C -0.082 4.082 14 C -0.170 4.170 15 C -0.174 4.174 16 C -0.014 4.014 17 O -0.244 6.244 18 C 0.010 3.990 19 C -0.007 4.007 20 C -0.582 4.582 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.795 3.205 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.183 1.183 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.250 0.750 36 H 0.242 0.758 37 H 0.259 0.741 38 H 0.202 0.798 39 H 0.192 0.808 40 H 0.174 0.826 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.122 -6.859 -20.877 22.004 hybrid contribution 0.809 0.910 2.434 2.721 sum -0.313 -5.949 -18.443 19.382 Atomic orbital electron populations 1.21714 0.96527 1.00030 1.01255 1.21808 0.95080 0.96078 1.03064 1.21176 0.94187 0.93251 0.85840 0.89186 1.22429 0.90673 0.95261 0.91944 1.86460 1.27482 1.72218 1.53342 1.45149 1.14750 1.59977 1.18415 1.16095 0.83202 0.78811 0.82639 1.90986 1.51491 1.62893 1.38111 1.42588 1.14832 1.57306 1.16710 1.17690 0.87562 0.96466 0.88487 1.67685 1.04584 1.19390 1.26746 1.23051 0.91439 0.94625 0.99074 1.22256 1.01936 1.00537 0.92256 1.21873 0.92313 1.01123 1.02044 1.19710 0.92337 1.01089 0.88306 1.86028 1.41648 1.74545 1.22151 1.22943 0.98871 0.95658 0.81569 1.18940 0.93514 0.96373 0.91872 1.21403 1.02034 1.36684 0.98116 0.91097 1.25967 0.94827 0.96145 1.02566 1.70103 1.09304 1.45761 1.31674 0.85355 0.77982 0.78836 0.78335 1.19746 1.20876 1.18341 0.93185 0.95247 0.93301 0.89379 0.91880 0.89589 0.92212 0.75004 0.75761 0.74063 0.79778 0.80784 0.82631 0.91883 0.91806 0.98128 0.98038 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.51 71.98 0.61 -2.87 16 2 C -0.12 -2.41 5.33 30.60 0.16 -2.25 16 3 C 0.16 3.07 2.66 45.00 0.12 3.19 16 4 H 0.09 1.92 7.58 -2.39 -0.02 1.90 16 5 C 0.08 0.90 6.79 71.98 0.49 1.39 16 6 O -0.59 -7.60 12.61 -148.98 -1.88 -9.48 16 7 N -0.73 -16.94 5.02 -457.81 -2.30 -19.23 16 8 C 0.69 21.37 7.10 179.06 1.27 22.64 16 9 O -0.56 -20.23 11.73 -4.00 -0.05 -20.27 16 10 N -0.66 -21.17 5.40 -321.76 -1.74 -22.90 16 11 C 0.33 11.46 7.45 132.98 0.99 12.45 16 12 N -0.47 -15.88 7.87 -192.58 -1.52 -17.40 16 13 C 0.07 1.94 11.17 84.63 0.95 2.88 16 14 C -0.15 -3.37 10.10 22.36 0.23 -3.14 16 15 C -0.15 -4.12 9.14 22.53 0.21 -3.91 16 16 C 0.04 1.24 6.72 22.70 0.15 1.40 16 17 O -0.33 -12.66 9.39 -93.36 -0.88 -13.54 16 18 C 0.08 3.35 4.70 71.98 0.34 3.69 16 19 C 0.03 1.55 5.34 29.85 0.16 1.71 16 20 C -0.54 -29.34 9.11 25.60 0.23 -29.10 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 22 C 0.00 0.20 5.46 84.65 0.46 0.67 16 23 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 24 Si 0.97 42.22 29.54 68.60 2.03 44.24 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 0.91 5.65 -2.38 -0.01 0.90 16 30 H 0.05 1.31 7.84 -2.39 -0.02 1.29 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.37 7.73 -2.39 -0.02 1.35 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.40 1.73 9.12 -74.06 -0.68 1.05 16 36 H 0.41 8.42 8.40 -92.71 -0.78 7.64 16 37 H 0.42 12.43 8.06 -92.71 -0.75 11.69 16 38 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.16 3.92 6.44 -2.91 -0.02 3.90 16 41 H 0.06 2.36 7.70 -2.39 -0.02 2.34 16 42 H 0.06 2.38 7.70 -2.39 -0.02 2.36 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -73.99 372.95 -0.83 -74.83 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -1.16 Total: 29.41 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.37 Total: 8.75 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -5.26 Total: -113.94 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -2.80 Total: -43.29 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -73.99 -0.83 -74.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186441645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.484 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds