Wall clock time and date at job start Tue Mar 31 2020 14:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47479 * 2 1 4 4 C 1.52999 * 109.47276 * 240.00013 * 2 1 3 5 5 O 1.42903 * 109.47256 * 305.00584 * 4 2 1 6 6 N 1.46497 * 109.46869 * 120.00121 * 2 1 3 7 7 C 1.46503 * 120.00094 * 59.99926 * 6 2 1 8 8 C 1.34776 * 119.99991 * 239.99874 * 6 2 1 9 9 O 1.21577 * 120.00099 * 359.97438 * 8 6 2 10 10 N 1.34773 * 120.00017 * 180.02562 * 8 6 2 11 11 C 1.39581 * 120.00095 * 180.02562 * 10 8 6 12 12 N 1.32267 * 119.72738 * 359.97438 * 11 10 8 13 13 C 1.31974 * 121.69092 * 180.02562 * 12 11 10 14 14 C 1.38068 * 120.95024 * 0.02562 * 13 12 11 15 15 C 1.38787 * 119.35738 * 359.97438 * 14 13 12 16 16 C 1.38788 * 118.44909 * 359.72814 * 15 14 13 17 17 O 1.35978 * 120.49648 * 180.28068 * 16 15 14 18 18 C 1.42903 * 117.00168 * 0.27295 * 17 16 15 19 19 C 1.52999 * 109.47189 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47238 * 179.97438 * 19 18 17 21 21 H 1.08008 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00645 * 179.97438 * 20 19 18 23 23 N 1.31525 * 119.99360 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00649 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47083 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47105 * 119.99953 * 24 22 20 27 27 H 1.48500 * 109.47405 * 240.00004 * 24 22 20 28 28 H 1.09003 * 109.46624 * 59.99758 * 1 2 3 29 29 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46813 * 300.00368 * 1 2 3 31 31 H 1.08997 * 109.47286 * 185.00144 * 4 2 1 32 32 H 1.09008 * 109.47201 * 64.99925 * 4 2 1 33 33 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.47057 * 89.99713 * 7 6 2 35 35 H 1.08996 * 109.47434 * 209.99868 * 7 6 2 36 36 H 1.09006 * 109.47121 * 329.99889 * 7 6 2 37 37 H 0.97007 * 120.00112 * 359.97438 * 10 8 6 38 38 H 1.07999 * 119.52509 * 180.02562 * 13 12 11 39 39 H 1.08007 * 120.31651 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.77486 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.46947 * 299.99891 * 18 17 16 42 42 H 1.09002 * 109.47189 * 59.99765 * 18 17 16 43 43 H 1.08997 * 109.47362 * 299.99974 * 19 18 17 44 44 H 1.09002 * 109.46971 * 59.99970 * 19 18 17 45 45 H 0.96996 * 119.99843 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3095 6 7 2.0183 -0.6906 1.1961 7 6 1.6643 -2.0932 1.4280 8 6 2.7931 -0.0357 2.0833 9 8 3.0873 1.1281 1.8907 10 7 3.2427 -0.6712 3.1835 11 6 4.0448 0.0073 4.1026 12 7 4.3607 1.2736 3.8882 13 6 5.1165 1.9519 4.7310 14 6 5.6101 1.3600 5.8766 15 6 5.3042 0.0326 6.1426 16 6 4.5022 -0.6543 5.2421 17 8 4.1719 -1.9545 5.4645 18 6 4.6813 -2.5587 6.6551 19 6 4.2074 -4.0114 6.7328 20 6 4.7450 -4.6488 7.9880 21 1 5.3627 -4.0750 8.6632 22 6 4.4477 -5.9641 8.2752 23 7 3.6952 -6.6627 7.4533 24 14 5.1147 -6.7544 9.8308 25 1 5.9283 -5.7633 10.5798 26 1 3.9838 -7.2084 10.6795 27 1 5.9618 -7.9196 9.4701 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.7517 -0.1583 -2.1370 33 1 1.7505 -2.5464 -2.0778 34 1 2.4156 -2.7378 0.9716 35 1 1.6237 -2.2853 2.5001 36 1 0.6903 -2.3002 0.9846 37 1 3.0084 -1.5999 3.3370 38 1 5.3525 2.9848 4.5216 39 1 6.2274 1.9248 6.5596 40 1 5.6784 -0.4532 7.0317 41 1 5.7708 -2.5320 6.6386 42 1 4.3175 -2.0113 7.5247 43 1 3.1179 -4.0378 6.7494 44 1 4.5708 -4.5591 5.8632 45 1 3.4857 -7.5879 7.6555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186451290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:05 Heat of formation + Delta-G solvation = -62.951727 kcal Electronic energy + Delta-G solvation = -27434.761829 eV Core-core repulsion = 23453.804444 eV Total energy + Delta-G solvation = -3980.957385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96736 -39.81903 -37.93926 -37.51398 -35.32643 -34.80475 -33.46508 -31.94009 -31.36284 -30.35427 -28.85510 -27.09919 -26.34668 -25.39471 -23.83912 -22.82486 -21.70880 -20.74007 -19.49782 -18.86539 -17.95519 -17.47111 -17.21475 -16.23182 -16.03363 -15.98895 -15.82701 -15.49304 -14.76990 -14.56806 -14.51446 -14.35333 -13.90431 -13.71555 -13.58514 -12.97522 -12.91937 -12.81398 -12.40679 -12.37684 -12.31306 -11.95847 -11.89794 -11.55203 -11.16305 -11.03385 -11.00598 -10.66662 -10.66481 -10.34755 -10.19618 -10.03064 -9.76696 -9.38826 -9.16968 -9.00856 -8.68089 -8.51820 -7.58041 -6.17460 -4.22151 1.31608 1.50786 2.44731 3.22113 3.23379 3.29425 3.32477 3.57052 3.69668 4.01120 4.11303 4.34524 4.59113 4.73480 4.85365 5.00106 5.03225 5.08515 5.16873 5.19528 5.22671 5.29332 5.34804 5.51615 5.53449 5.55421 5.78180 5.87527 5.88717 5.92359 6.05343 6.10865 6.22419 6.40966 6.42634 6.56669 6.69018 6.88554 7.32406 7.37510 7.53848 7.65033 7.71958 7.88839 8.15314 8.28051 8.66950 8.83266 9.42775 10.94014 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.003050 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.008220 B = 9177.122666 C =11267.705322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.113 0.887 4 C 0.067 3.933 5 O -0.566 6.566 6 N -0.624 5.624 7 C 0.085 3.915 8 C 0.698 3.302 9 O -0.540 6.540 10 N -0.660 5.660 11 C 0.347 3.653 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.164 4.164 15 C -0.146 4.146 16 C 0.064 3.936 17 O -0.317 6.317 18 C 0.066 3.934 19 C 0.026 3.974 20 C -0.527 4.527 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.377 0.623 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.420 0.580 38 H 0.156 0.844 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 12.743 -14.624 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 H 0.131 0.869 4 C -0.012 4.012 5 O -0.372 6.372 6 N -0.362 5.362 7 C -0.058 4.058 8 C 0.399 3.601 9 O -0.412 6.412 10 N -0.311 5.311 11 C 0.113 3.887 12 N -0.157 5.157 13 C -0.080 4.080 14 C -0.185 4.185 15 C -0.173 4.173 16 C 0.012 3.988 17 O -0.230 6.230 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.224 0.776 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.260 0.740 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.347 13.854 -15.160 20.808 hybrid contribution 0.979 -1.662 1.396 2.381 sum -2.368 12.192 -13.764 18.539 Atomic orbital electron populations 1.22053 0.94457 1.03053 1.02060 1.21040 0.94694 0.96993 0.82063 0.86908 1.22584 0.97068 0.84217 0.97365 1.86514 1.72875 1.27258 1.50542 1.47076 1.53210 1.12817 1.23109 1.21729 1.02444 0.80986 1.00681 1.15914 0.79390 0.84937 0.79831 1.90990 1.60387 1.14232 1.75598 1.42687 1.51232 1.15961 1.21241 1.17530 0.94695 0.89133 0.87368 1.67642 1.13533 1.04359 1.30140 1.22412 0.95134 0.99793 0.90693 1.21872 1.02436 0.95001 0.99233 1.21580 0.99830 0.95529 1.00348 1.19543 0.98070 0.86543 0.94636 1.86096 1.71045 1.20160 1.45682 1.23382 0.97700 0.97060 0.82621 1.19127 0.97824 0.86066 0.98060 1.20987 1.32471 0.96741 1.06326 0.92297 1.24983 0.94952 0.97145 0.97056 1.69978 1.36740 1.09446 1.36496 0.86431 0.78806 0.79340 0.82816 1.19634 1.20814 1.20813 0.91671 0.91231 0.92330 0.93266 0.92635 0.77605 0.92304 0.92032 0.89867 0.73999 0.82697 0.84859 0.83773 0.92969 0.92970 0.95362 0.95366 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.97 37.16 0.33 -1.10 16 2 C 0.16 1.64 3.17 -67.93 -0.22 1.42 16 3 H 0.11 1.32 6.90 -51.93 -0.36 0.96 16 4 C 0.07 0.54 6.79 37.16 0.25 0.79 16 5 O -0.57 -4.31 10.51 -35.23 -0.37 -4.68 16 6 N -0.62 -7.83 2.76 -179.67 -0.50 -8.33 16 7 C 0.08 0.92 8.49 59.85 0.51 1.42 16 8 C 0.70 11.20 8.25 -86.92 -0.72 10.49 16 9 O -0.54 -10.19 13.92 5.30 0.07 -10.11 16 10 N -0.66 -10.64 5.26 -15.68 -0.08 -10.72 16 11 C 0.35 6.08 7.45 -154.44 -1.15 4.93 16 12 N -0.44 -7.75 7.87 -12.22 -0.10 -7.85 16 13 C 0.08 1.08 11.17 -17.55 -0.20 0.88 16 14 C -0.16 -2.11 10.10 -39.44 -0.40 -2.51 16 15 C -0.15 -2.19 9.14 -39.18 -0.36 -2.55 16 16 C 0.06 1.10 6.72 -38.92 -0.26 0.84 16 17 O -0.32 -6.00 9.39 -19.67 -0.18 -6.18 16 18 C 0.07 1.33 4.70 37.16 0.17 1.50 16 19 C 0.03 0.65 5.34 -27.89 -0.15 0.50 16 20 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 21 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 24 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.64 6.08 -51.93 -0.32 0.33 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.38 1.41 9.12 45.56 0.42 1.82 16 34 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 35 H 0.06 0.67 6.36 -51.93 -0.33 0.34 16 36 H 0.08 0.82 5.87 -51.93 -0.30 0.52 16 37 H 0.42 6.24 5.78 -40.82 -0.24 6.00 16 38 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 40 H 0.14 1.99 6.44 -52.49 -0.34 1.66 16 41 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 42 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -33.57 369.64 -8.06 -41.63 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.60 Total: 6.03 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.59 Total: 3.77 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.06 Total: -51.71 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.48 Total: -20.98 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.57 -8.06 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186451290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.321 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds