Wall clock time and date at job start Tue Mar 31 2020 14:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47479 * 2 1 4 4 C 1.52999 * 109.47276 * 240.00013 * 2 1 3 5 5 O 1.42903 * 109.47256 * 305.00584 * 4 2 1 6 6 N 1.46497 * 109.46869 * 120.00121 * 2 1 3 7 7 C 1.46503 * 120.00094 * 59.99926 * 6 2 1 8 8 C 1.34776 * 119.99991 * 239.99874 * 6 2 1 9 9 O 1.21577 * 120.00099 * 359.97438 * 8 6 2 10 10 N 1.34773 * 120.00017 * 180.02562 * 8 6 2 11 11 C 1.39581 * 120.00095 * 180.02562 * 10 8 6 12 12 N 1.32267 * 119.72738 * 359.97438 * 11 10 8 13 13 C 1.31974 * 121.69092 * 180.02562 * 12 11 10 14 14 C 1.38068 * 120.95024 * 0.02562 * 13 12 11 15 15 C 1.38787 * 119.35738 * 359.97438 * 14 13 12 16 16 C 1.38788 * 118.44909 * 359.72814 * 15 14 13 17 17 O 1.35978 * 120.49648 * 180.28068 * 16 15 14 18 18 C 1.42903 * 117.00168 * 0.27295 * 17 16 15 19 19 C 1.52999 * 109.47189 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47238 * 179.97438 * 19 18 17 21 21 H 1.08008 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00645 * 179.97438 * 20 19 18 23 23 N 1.31525 * 119.99360 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00649 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47083 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47105 * 119.99953 * 24 22 20 27 27 H 1.48500 * 109.47405 * 240.00004 * 24 22 20 28 28 H 1.09003 * 109.46624 * 59.99758 * 1 2 3 29 29 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46813 * 300.00368 * 1 2 3 31 31 H 1.08997 * 109.47286 * 185.00144 * 4 2 1 32 32 H 1.09008 * 109.47201 * 64.99925 * 4 2 1 33 33 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.47057 * 89.99713 * 7 6 2 35 35 H 1.08996 * 109.47434 * 209.99868 * 7 6 2 36 36 H 1.09006 * 109.47121 * 329.99889 * 7 6 2 37 37 H 0.97007 * 120.00112 * 359.97438 * 10 8 6 38 38 H 1.07999 * 119.52509 * 180.02562 * 13 12 11 39 39 H 1.08007 * 120.31651 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.77486 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.46947 * 299.99891 * 18 17 16 42 42 H 1.09002 * 109.47189 * 59.99765 * 18 17 16 43 43 H 1.08997 * 109.47362 * 299.99974 * 19 18 17 44 44 H 1.09002 * 109.46971 * 59.99970 * 19 18 17 45 45 H 0.96996 * 119.99843 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3095 6 7 2.0183 -0.6906 1.1961 7 6 1.6643 -2.0932 1.4280 8 6 2.7931 -0.0357 2.0833 9 8 3.0873 1.1281 1.8907 10 7 3.2427 -0.6712 3.1835 11 6 4.0448 0.0073 4.1026 12 7 4.3607 1.2736 3.8882 13 6 5.1165 1.9519 4.7310 14 6 5.6101 1.3600 5.8766 15 6 5.3042 0.0326 6.1426 16 6 4.5022 -0.6543 5.2421 17 8 4.1719 -1.9545 5.4645 18 6 4.6813 -2.5587 6.6551 19 6 4.2074 -4.0114 6.7328 20 6 4.7450 -4.6488 7.9880 21 1 5.3627 -4.0750 8.6632 22 6 4.4477 -5.9641 8.2752 23 7 3.6952 -6.6627 7.4533 24 14 5.1147 -6.7544 9.8308 25 1 5.9283 -5.7633 10.5798 26 1 3.9838 -7.2084 10.6795 27 1 5.9618 -7.9196 9.4701 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.7517 -0.1583 -2.1370 33 1 1.7505 -2.5464 -2.0778 34 1 2.4156 -2.7378 0.9716 35 1 1.6237 -2.2853 2.5001 36 1 0.6903 -2.3002 0.9846 37 1 3.0084 -1.5999 3.3370 38 1 5.3525 2.9848 4.5216 39 1 6.2274 1.9248 6.5596 40 1 5.6784 -0.4532 7.0317 41 1 5.7708 -2.5320 6.6386 42 1 4.3175 -2.0113 7.5247 43 1 3.1179 -4.0378 6.7494 44 1 4.5708 -4.5591 5.8632 45 1 3.4857 -7.5879 7.6555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186451290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:04 Heat of formation + Delta-G solvation = -86.131958 kcal Electronic energy + Delta-G solvation = -27435.766999 eV Core-core repulsion = 23453.804444 eV Total energy + Delta-G solvation = -3981.962556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17115 -40.98111 -39.21774 -38.43632 -36.19097 -36.05523 -35.44606 -32.97784 -32.69569 -31.90592 -30.12401 -27.98667 -27.17656 -27.11324 -25.16174 -24.10948 -23.03100 -22.16281 -20.58369 -19.94870 -19.24789 -18.58934 -18.18892 -18.02141 -17.27538 -17.25135 -16.83924 -16.78327 -16.47065 -15.75183 -15.52975 -15.36060 -15.15872 -14.76653 -14.62775 -14.35661 -14.16676 -13.99714 -13.66909 -13.60387 -13.35258 -13.16965 -13.09498 -12.78018 -12.76809 -12.43047 -12.34923 -11.95738 -11.86738 -11.71300 -11.62217 -11.49457 -11.37177 -10.88654 -10.60985 -10.40776 -10.22627 -9.70916 -8.81669 -8.25189 -6.37582 0.14730 0.30898 1.36316 1.42679 1.43072 1.55959 2.03436 2.12123 2.44878 2.63436 2.91339 3.10126 3.42900 3.54479 3.81356 3.87121 3.98081 4.10409 4.13783 4.23790 4.30048 4.34354 4.38187 4.48468 4.53751 4.58254 4.67312 4.75231 4.79817 4.93554 4.99453 5.03419 5.13632 5.26575 5.30180 5.32374 5.43529 5.50812 5.59321 5.74260 5.80834 6.08644 6.35432 6.57480 6.77337 6.93163 7.09865 7.32417 7.47333 8.87645 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.003050 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.008220 B = 9177.122666 C =11267.705322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.097 0.903 4 C 0.076 3.924 5 O -0.577 6.577 6 N -0.618 5.618 7 C 0.087 3.913 8 C 0.692 3.308 9 O -0.574 6.574 10 N -0.662 5.662 11 C 0.326 3.674 12 N -0.472 5.472 13 C 0.075 3.925 14 C -0.147 4.147 15 C -0.146 4.146 16 C 0.038 3.962 17 O -0.331 6.331 18 C 0.083 3.917 19 C 0.030 3.970 20 C -0.543 4.543 21 H 0.071 0.929 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.971 3.029 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.395 0.605 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.422 0.578 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 13.693 -13.945 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.115 0.885 4 C -0.003 4.003 5 O -0.385 6.385 6 N -0.355 5.355 7 C -0.056 4.056 8 C 0.393 3.607 9 O -0.449 6.449 10 N -0.313 5.313 11 C 0.093 3.907 12 N -0.188 5.188 13 C -0.082 4.082 14 C -0.167 4.167 15 C -0.172 4.172 16 C -0.013 4.013 17 O -0.245 6.245 18 C 0.009 3.991 19 C -0.007 4.007 20 C -0.581 4.581 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.795 3.205 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.262 0.738 38 H 0.204 0.796 39 H 0.194 0.806 40 H 0.176 0.824 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.391 14.790 -14.515 20.860 hybrid contribution 0.677 -1.859 1.113 2.270 sum -1.714 12.931 -13.402 18.702 Atomic orbital electron populations 1.21982 0.93166 1.03118 1.02427 1.21270 0.95675 0.96516 0.82257 0.88493 1.22417 0.96219 0.84750 0.96904 1.86458 1.72905 1.27170 1.51999 1.47212 1.52069 1.13286 1.22954 1.21783 1.03161 0.80064 1.00551 1.16123 0.79670 0.84764 0.80113 1.90943 1.61898 1.15634 1.76437 1.42727 1.51253 1.16019 1.21338 1.17727 0.95496 0.89544 0.87888 1.67684 1.14856 1.04547 1.31682 1.23078 0.93722 1.00946 0.90434 1.22277 1.01361 0.94101 0.99007 1.21891 0.98824 0.96433 1.00071 1.19689 0.99962 0.85887 0.95727 1.86025 1.71692 1.21583 1.45173 1.22960 0.98115 0.94346 0.83656 1.18945 0.95994 0.89184 0.96600 1.21423 1.32405 0.97268 1.06997 0.91106 1.25962 0.95155 0.97902 1.00490 1.70111 1.38164 1.09896 1.38617 0.85308 0.78210 0.78409 0.78577 1.18152 1.20484 1.20457 0.89508 0.91184 0.93753 0.94412 0.90023 0.75471 0.91963 0.92555 0.88561 0.73822 0.79642 0.80569 0.82431 0.91752 0.91792 0.98058 0.98037 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.97 71.98 0.65 -1.95 16 2 C 0.15 3.06 3.17 44.99 0.14 3.20 16 3 H 0.10 2.35 6.90 -2.39 -0.02 2.33 16 4 C 0.08 1.16 6.79 71.98 0.49 1.65 16 5 O -0.58 -7.94 10.51 -148.98 -1.57 -9.50 16 6 N -0.62 -15.94 2.76 -840.63 -2.32 -18.26 16 7 C 0.09 1.92 8.49 127.77 1.08 3.00 16 8 C 0.69 23.12 8.25 179.06 1.48 24.60 16 9 O -0.57 -22.46 13.92 -3.96 -0.06 -22.51 16 10 N -0.66 -22.31 5.26 -321.78 -1.69 -24.00 16 11 C 0.33 11.64 7.45 132.99 0.99 12.63 16 12 N -0.47 -16.50 7.87 -192.59 -1.52 -18.02 16 13 C 0.07 1.97 11.17 84.63 0.95 2.91 16 14 C -0.15 -3.31 10.10 22.36 0.23 -3.09 16 15 C -0.15 -4.08 9.14 22.53 0.21 -3.88 16 16 C 0.04 1.32 6.72 22.70 0.15 1.47 16 17 O -0.33 -12.79 9.39 -93.30 -0.88 -13.67 16 18 C 0.08 3.33 4.70 71.98 0.34 3.67 16 19 C 0.03 1.53 5.34 29.85 0.16 1.69 16 20 C -0.54 -29.15 9.11 25.60 0.23 -28.91 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 22 C 0.00 0.20 5.46 84.65 0.46 0.66 16 23 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 24 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.22 6.08 -2.39 -0.01 1.21 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.40 2.25 9.12 -74.06 -0.68 1.57 16 34 H 0.06 1.34 7.97 -2.39 -0.02 1.32 16 35 H 0.06 1.30 6.36 -2.39 -0.02 1.28 16 36 H 0.10 1.87 5.87 -2.38 -0.01 1.86 16 37 H 0.42 13.32 5.78 -92.70 -0.54 12.78 16 38 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 39 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.16 3.94 6.44 -2.91 -0.02 3.92 16 41 H 0.06 2.39 7.69 -2.39 -0.02 2.37 16 42 H 0.06 2.38 7.71 -2.39 -0.02 2.36 16 43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -74.31 369.64 1.66 -72.65 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.18 Total: 25.66 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 7.55 Total: 17.65 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -5.24 Total: -114.43 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -2.50 Total: -45.68 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.31 1.66 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186451290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.481 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds