Wall clock time and date at job start Tue Mar 31 2020 13:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34749 * 117.00542 * 270.00275 * 13 3 2 15 15 O 1.21516 * 119.99915 * 0.02562 * 14 13 3 16 16 C 1.47389 * 120.00264 * 179.97438 * 14 13 3 17 17 C 1.36671 * 125.77977 * 179.71996 * 16 14 13 18 18 N 1.34778 * 106.83376 * 179.83997 * 17 16 14 19 19 C 1.46497 * 126.58578 * 180.14745 * 18 17 16 20 20 C 1.50705 * 109.47046 * 125.34008 * 19 18 17 21 21 O 1.20759 * 120.00116 * 359.97438 * 20 19 18 22 22 C 1.50702 * 120.00012 * 180.02562 * 20 19 18 23 23 C 1.52994 * 109.47019 * 179.97438 * 22 20 19 24 24 C 1.53001 * 109.46797 * 300.00119 * 22 20 19 25 25 C 1.53002 * 109.47265 * 59.99695 * 22 20 19 26 26 N 1.40212 * 106.82730 * 0.41297 * 18 17 16 27 27 N 1.28754 * 108.38504 * 359.73688 * 26 18 17 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 34 34 H 1.08000 * 126.58165 * 359.97438 * 17 16 14 35 35 H 1.08996 * 109.47221 * 245.33766 * 19 18 17 36 36 H 1.08997 * 109.47149 * 5.34033 * 19 18 17 37 37 H 1.09001 * 109.47126 * 59.99994 * 23 22 20 38 38 H 1.09003 * 109.47209 * 179.97438 * 23 22 20 39 39 H 1.08993 * 109.47279 * 299.99783 * 23 22 20 40 40 H 1.08999 * 109.47548 * 60.00040 * 24 22 20 41 41 H 1.09003 * 109.46716 * 180.02562 * 24 22 20 42 42 H 1.09000 * 109.46596 * 299.99464 * 24 22 20 43 43 H 1.08999 * 109.47042 * 59.99747 * 25 22 20 44 44 H 1.08992 * 109.47346 * 180.02562 * 25 22 20 45 45 H 1.08999 * 109.47216 * 300.00044 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6559 2.0916 1.2407 14 6 0.4681 2.7278 1.2561 15 8 -0.2279 2.7395 0.2601 16 6 0.0126 3.4087 2.4814 17 6 -1.1626 4.0911 2.6265 18 7 -1.1918 4.5533 3.8922 19 6 -2.2612 5.3418 4.5093 20 6 -2.7259 4.6585 5.7696 21 8 -2.2167 3.6198 6.1163 22 6 -3.8269 5.2708 6.5967 23 6 -4.1050 4.3841 7.8121 24 6 -3.3977 6.6620 7.0672 25 6 -5.0960 5.3878 5.7502 26 7 0.0006 4.1397 4.5030 27 7 0.6854 3.4685 3.6438 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8292 -0.0609 -2.9500 34 1 -1.9229 4.2312 1.8724 35 1 -1.8858 6.3358 4.7523 36 1 -3.0962 5.4286 3.8141 37 1 -3.2010 4.3004 8.4153 38 1 -4.9010 4.8272 8.4106 39 1 -4.4110 3.3932 7.4765 40 1 -3.1998 7.2935 6.2011 41 1 -4.1938 7.1047 7.6658 42 1 -2.4936 6.5786 7.6703 43 1 -5.4017 4.3967 5.4149 44 1 -5.8921 5.8311 6.3482 45 1 -4.8981 6.0193 4.8841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188006344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:29 Heat of formation + Delta-G solvation = -58.823023 kcal Electronic energy + Delta-G solvation = -27290.606100 eV Core-core repulsion = 23309.827749 eV Total energy + Delta-G solvation = -3980.778351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.39516 -41.26591 -40.97263 -37.63568 -36.83004 -35.81476 -35.42601 -33.37354 -32.19663 -30.31630 -29.27589 -28.18763 -27.93405 -25.85169 -24.82121 -24.70446 -22.89903 -22.40501 -21.39761 -19.78177 -19.25763 -18.61799 -17.99217 -17.71012 -17.26983 -17.04072 -16.53717 -16.28936 -16.25940 -16.01346 -15.42377 -15.01799 -14.78342 -14.74128 -14.65135 -14.00129 -13.76949 -13.40664 -13.35543 -13.33148 -13.13127 -13.11244 -13.05504 -13.01314 -12.82315 -12.58761 -12.54789 -12.35818 -12.14218 -11.91134 -11.87652 -11.77911 -11.74061 -11.58777 -11.37449 -10.82369 -10.64533 -10.52921 -10.38434 -8.27184 -6.42861 -0.01750 0.45262 0.77198 0.88677 1.41204 1.42184 1.55963 1.93032 2.01170 2.40773 2.58789 3.01902 3.16049 3.45145 3.62343 3.77685 3.84145 3.89668 3.92466 4.07488 4.25749 4.37848 4.38949 4.40364 4.47780 4.63921 4.70796 4.74474 4.84344 4.86521 4.96445 4.97930 5.03384 5.09383 5.21876 5.22154 5.23740 5.35062 5.38808 5.40199 5.51511 5.66894 5.91995 6.10109 6.33553 6.57188 6.75225 7.00521 7.27680 8.80003 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028717 B = 0.002409 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.811310 B =11621.716354 C =11976.960901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.225 3.775 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.270 1.270 12 H -0.271 1.271 13 O -0.355 6.355 14 C 0.541 3.459 15 O -0.526 6.526 16 C -0.111 4.111 17 C 0.129 3.871 18 N -0.347 5.347 19 C 0.055 3.945 20 C 0.349 3.651 21 O -0.473 6.473 22 C -0.100 4.100 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.143 4.143 26 N -0.069 5.069 27 N -0.220 5.220 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.272 0.728 34 H 0.256 0.744 35 H 0.168 0.832 36 H 0.193 0.807 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.942 16.136 15.535 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.036 0.964 5 C -0.588 4.588 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.803 3.197 10 H -0.194 1.194 11 H -0.195 1.195 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.384 3.616 15 O -0.416 6.416 16 C -0.248 4.248 17 C -0.028 4.028 18 N -0.131 5.131 19 C -0.064 4.064 20 C 0.224 3.776 21 O -0.345 6.345 22 C -0.101 4.101 23 C -0.196 4.196 24 C -0.200 4.200 25 C -0.200 4.200 26 N -0.050 5.050 27 N -0.095 5.095 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.272 0.728 35 H 0.185 0.815 36 H 0.210 0.790 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.030 15.496 16.540 30.918 hybrid contribution 0.558 -0.492 -1.038 1.277 sum -20.472 15.004 15.502 29.741 Atomic orbital electron populations 1.21709 0.95953 1.00732 1.00232 1.21882 0.94831 0.97972 1.02193 1.20497 0.94624 0.89422 0.78279 0.96409 1.21322 0.90606 1.40082 1.06819 0.92365 1.25740 1.04132 0.93797 0.94269 1.69991 1.37235 1.37838 1.09796 0.85189 0.77847 0.78395 0.78299 1.19447 1.19513 1.19628 1.86625 1.34902 1.62604 1.42882 1.19827 0.80098 0.75701 0.85959 1.90774 1.55844 1.60133 1.34833 1.20557 0.97960 1.12744 0.93554 1.23873 0.98089 0.92332 0.88529 1.50403 1.16577 1.37400 1.08699 1.23324 0.89337 0.96437 0.97340 1.25434 0.82181 0.84384 0.85651 1.90553 1.51958 1.23260 1.68757 1.21176 0.94860 0.98095 0.95983 1.21765 1.01996 0.98997 0.96802 1.21958 1.02412 0.92495 1.03146 1.21969 0.94557 1.03002 1.00482 1.81993 0.91558 1.14575 1.16923 1.74814 1.24192 1.10448 1.00026 0.94967 0.91975 0.93518 0.94328 0.89046 0.91888 0.72770 0.81475 0.79038 0.93952 0.89507 0.93745 0.89109 0.89388 0.93331 0.92897 0.89490 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.56 71.98 0.62 -5.23 16 2 C -0.13 -6.93 5.49 30.59 0.17 -6.76 16 3 C 0.22 12.90 2.25 29.85 0.07 12.97 16 4 H 0.02 1.12 7.16 -2.39 -0.02 1.11 16 5 C -0.55 -33.08 8.90 25.60 0.23 -32.85 16 6 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -52.88 11.29 21.45 0.24 -52.64 16 9 Si 0.98 44.72 29.54 68.60 2.03 46.74 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 O -0.35 -19.14 9.81 -56.60 -0.56 -19.70 16 14 C 0.54 24.80 6.41 70.23 0.45 25.25 16 15 O -0.53 -24.30 14.05 19.78 0.28 -24.02 16 16 C -0.11 -4.16 7.02 40.79 0.29 -3.88 16 17 C 0.13 3.07 11.27 83.87 0.95 4.01 16 18 N -0.35 -7.59 3.41 -350.80 -1.20 -8.79 16 19 C 0.05 0.45 6.29 85.64 0.54 0.99 16 20 C 0.35 4.89 6.00 29.10 0.17 5.07 16 21 O -0.47 -12.58 15.35 -1.45 -0.02 -12.60 16 22 C -0.10 -0.69 0.87 -52.93 -0.05 -0.74 16 23 C -0.14 -1.58 7.76 71.98 0.56 -1.02 16 24 C -0.14 -0.40 8.26 71.98 0.59 0.20 16 25 C -0.14 -0.21 8.25 71.98 0.59 0.38 16 26 N -0.07 -2.34 12.89 37.02 0.48 -1.87 16 27 N -0.22 -8.97 12.39 -50.03 -0.62 -9.59 16 28 H 0.03 1.42 6.06 -2.39 -0.01 1.41 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 2.16 7.79 -2.38 -0.02 2.14 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 5.17 5.95 -2.39 -0.01 5.16 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.26 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.17 0.31 7.38 -2.39 -0.02 0.30 16 36 H 0.19 -0.49 7.32 -2.39 -0.02 -0.50 16 37 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 40 H 0.09 -0.20 7.28 -2.39 -0.02 -0.21 16 41 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.09 -0.04 8.14 -2.39 -0.02 -0.05 16 45 H 0.09 -0.38 7.28 -2.39 -0.02 -0.40 16 Total: -1.00 -87.08 376.28 7.25 -79.83 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.00 Total: 2.60 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.62 Total: 0.02 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.10 Total: -72.88 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -0.30 Total: -56.32 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -87.08 7.25 -79.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188006344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.010 kcal (2) G-P(sol) polarization free energy of solvation -87.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds