Wall clock time and date at job start Tue Mar 31 2020 14:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47219 * 2 1 4 4 O 1.42904 * 109.47079 * 240.00137 * 2 1 3 5 5 C 1.53000 * 109.47435 * 120.00200 * 2 1 3 6 6 C 1.52998 * 109.47441 * 184.99753 * 5 2 1 7 7 N 1.46496 * 109.46991 * 179.97438 * 6 5 2 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.09000 * 109.47302 * 299.99626 * 1 2 3 29 29 H 1.08998 * 109.47129 * 59.99469 * 1 2 3 30 30 H 1.09003 * 109.47618 * 179.97438 * 1 2 3 31 31 H 0.96703 * 114.00067 * 300.00350 * 4 2 1 32 32 H 1.09003 * 109.46681 * 64.99269 * 5 2 1 33 33 H 1.09000 * 109.46897 * 305.00477 * 5 2 1 34 34 H 1.08999 * 109.46870 * 60.00046 * 6 5 2 35 35 H 1.08995 * 109.46965 * 300.00283 * 6 5 2 36 36 H 0.97000 * 120.00201 * 0.02562 * 7 6 5 37 37 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 38 38 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 39 39 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6134 1.3136 7 7 4.0531 -1.3035 2.5100 8 6 5.3739 -1.3388 2.7758 9 8 6.1602 -0.7975 2.0228 10 7 5.8230 -1.9733 3.8768 11 6 7.1911 -2.0103 4.1517 12 7 8.0413 -1.4159 3.3311 13 6 9.3425 -1.4315 3.5506 14 6 9.8686 -2.0688 4.6568 15 6 9.0132 -2.7006 5.5488 16 6 7.6495 -2.6672 5.2934 17 8 6.7740 -3.2729 6.1395 18 6 7.3255 -3.9309 7.2818 19 6 6.1963 -4.5478 8.1096 20 6 6.7779 -5.2423 9.3139 21 1 7.8462 -5.2439 9.4728 22 6 5.9465 -5.8766 10.2124 23 7 6.4541 -6.4831 11.2631 24 14 4.0988 -5.8746 9.9372 25 1 3.7177 -7.0596 9.1276 26 1 3.4030 -5.9260 11.2480 27 1 3.7070 -4.6364 9.2170 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.7209 -1.5952 -1.2330 32 1 1.7515 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0728 0.4259 36 1 3.4258 -1.7350 3.1110 37 1 5.1957 -2.4048 4.4777 38 1 10.0055 -0.9385 2.8551 39 1 10.9351 -2.0750 4.8266 40 1 9.3998 -3.2056 6.4216 41 1 7.8687 -3.2080 7.8906 42 1 8.0075 -4.7159 6.9549 43 1 5.5146 -3.7627 8.4364 44 1 5.6528 -5.2706 7.5010 45 1 5.8690 -6.9290 11.8954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188676837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:51 Heat of formation + Delta-G solvation = -81.211859 kcal Electronic energy + Delta-G solvation = -26398.784723 eV Core-core repulsion = 22417.035519 eV Total energy + Delta-G solvation = -3981.749204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94731 -39.64038 -38.38240 -37.84867 -35.35871 -34.64361 -33.45615 -32.34201 -31.62726 -30.91969 -29.67798 -28.64932 -25.65044 -24.38779 -23.10432 -22.70712 -21.96074 -21.04842 -20.48995 -18.77965 -18.16373 -17.64095 -16.77129 -16.59231 -16.46658 -15.96548 -15.91113 -15.72331 -15.38119 -14.72606 -14.33334 -14.28649 -14.18985 -14.04470 -13.97516 -13.48126 -13.16332 -13.06848 -12.57449 -12.47025 -12.21991 -12.06529 -12.01220 -11.71316 -11.26656 -11.25650 -11.00265 -10.72786 -10.60626 -10.42107 -10.28909 -10.16582 -9.95357 -9.46113 -9.30787 -9.12630 -9.09667 -8.71415 -7.68004 -6.21952 -4.23647 1.24871 1.43514 2.39063 3.19245 3.20068 3.27968 3.30616 3.44227 3.78405 3.96031 4.03426 4.29734 4.29884 4.44416 4.61933 4.66293 4.87386 4.89181 4.94161 5.05712 5.11734 5.15346 5.22981 5.28656 5.43512 5.45992 5.59813 5.71871 5.75024 5.77139 5.78626 6.02512 6.15648 6.28361 6.30506 6.38385 6.52106 6.75390 6.95084 7.10185 7.20782 7.49282 7.61005 7.71875 8.22519 8.29257 8.59506 8.78456 9.37594 10.90481 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.002753 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.162510 B =10167.631954 C =12884.177552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.102 0.898 4 O -0.561 6.561 5 C -0.166 4.166 6 C 0.143 3.857 7 N -0.749 5.749 8 C 0.695 3.305 9 O -0.533 6.533 10 N -0.662 5.662 11 C 0.348 3.652 12 N -0.442 5.442 13 C 0.079 3.921 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.063 3.937 17 O -0.321 6.321 18 C 0.074 3.926 19 C -0.007 4.007 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.072 3.928 23 N -0.896 5.896 24 Si 0.882 3.118 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.264 1.264 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.375 0.625 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.395 0.605 37 H 0.419 0.581 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 11.221 -19.578 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.120 0.880 4 O -0.367 6.367 5 C -0.204 4.204 6 C 0.019 3.981 7 N -0.406 5.406 8 C 0.394 3.606 9 O -0.404 6.404 10 N -0.312 5.312 11 C 0.114 3.886 12 N -0.157 5.157 13 C -0.078 4.078 14 C -0.184 4.184 15 C -0.171 4.171 16 C 0.011 3.989 17 O -0.234 6.234 18 C -0.001 4.001 19 C -0.045 4.045 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.708 3.292 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.188 1.188 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.223 0.777 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.256 0.744 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.094 12.638 -21.007 25.521 hybrid contribution -1.295 -1.609 1.786 2.731 sum -8.389 11.029 -19.220 23.694 Atomic orbital electron populations 1.22503 0.96081 1.02724 1.03004 1.21830 0.92909 0.96909 0.83753 0.87996 1.86631 1.77126 1.29176 1.43756 1.22567 0.95625 1.02237 0.99942 1.21119 0.92565 0.97434 0.86979 1.45162 1.05735 1.61059 1.28647 1.15949 0.82708 0.80202 0.81694 1.91039 1.53968 1.47537 1.47893 1.42495 1.05400 1.57044 1.26271 1.17484 0.84632 0.96601 0.89920 1.67643 1.03446 1.17116 1.27460 1.22442 0.90259 0.98478 0.96623 1.21903 1.00903 0.99862 0.95729 1.21611 0.91479 1.02204 1.01780 1.19486 0.90245 0.97448 0.91718 1.86040 1.34680 1.66823 1.35851 1.23131 0.99143 0.94745 0.83031 1.19579 0.94067 0.96150 0.94671 1.20815 0.95791 1.34373 1.05695 0.90707 1.24941 0.99011 0.94409 0.94658 1.69887 1.35778 1.35034 1.12637 0.86746 0.85454 0.79184 0.77774 1.20070 1.21155 1.18838 0.91398 0.91595 0.92197 0.77748 0.90765 0.90155 0.91577 0.90815 0.77099 0.74444 0.82577 0.84702 0.83609 0.92322 0.92342 0.95418 0.95854 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.81 9.53 37.16 0.35 -0.45 16 2 C 0.11 0.60 3.59 -26.73 -0.10 0.50 16 3 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 4 O -0.56 -4.05 12.88 -35.23 -0.45 -4.50 16 5 C -0.17 -0.91 5.01 -26.73 -0.13 -1.04 16 6 C 0.14 1.29 5.57 -4.05 -0.02 1.26 16 7 N -0.75 -7.57 5.56 -65.23 -0.36 -7.93 16 8 C 0.70 10.15 8.53 -86.92 -0.74 9.41 16 9 O -0.53 -9.86 14.59 5.29 0.08 -9.78 16 10 N -0.66 -9.51 5.40 -15.67 -0.08 -9.60 16 11 C 0.35 5.71 7.45 -154.43 -1.15 4.56 16 12 N -0.44 -7.48 7.87 -12.22 -0.10 -7.57 16 13 C 0.08 1.07 11.17 -17.55 -0.20 0.88 16 14 C -0.16 -2.02 10.10 -39.44 -0.40 -2.41 16 15 C -0.14 -2.06 9.14 -39.17 -0.36 -2.42 16 16 C 0.06 1.01 6.72 -38.92 -0.26 0.75 16 17 O -0.32 -5.56 9.39 -19.69 -0.18 -5.75 16 18 C 0.07 1.38 4.70 37.16 0.17 1.55 16 19 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 20 C -0.53 -14.20 9.66 -34.44 -0.33 -14.53 16 21 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 22 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 23 N -0.90 -26.38 13.96 55.43 0.77 -25.61 16 24 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.38 1.44 9.05 45.56 0.41 1.85 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 36 H 0.40 2.90 8.49 -40.82 -0.35 2.56 16 37 H 0.42 5.11 8.06 -40.82 -0.33 4.78 16 38 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.15 1.94 6.44 -52.49 -0.34 1.60 16 41 H 0.06 1.06 7.70 -51.93 -0.40 0.67 16 42 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 43 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 44 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -34.96 378.34 -8.65 -43.61 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.97 Total: 5.87 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.38 Total: -0.31 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.23 Total: -50.71 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.56 Total: -20.03 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.96 -8.65 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188676837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.607 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds