Wall clock time and date at job start Tue Mar 31 2020 14:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46685 * 2 1 4 4 C 1.53000 * 109.46552 * 240.00367 * 2 1 3 5 5 O 1.42891 * 109.47478 * 64.99668 * 4 2 1 6 6 C 1.52998 * 109.47306 * 120.00122 * 2 1 3 7 7 N 1.46496 * 109.46991 * 294.99800 * 6 2 1 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47574 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99892 * 24 22 20 27 27 H 1.48499 * 109.47067 * 329.99541 * 24 22 20 28 28 H 1.08990 * 109.47446 * 59.99732 * 1 2 3 29 29 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46654 * 299.99836 * 1 2 3 31 31 H 1.09004 * 109.46709 * 184.99542 * 4 2 1 32 32 H 1.09002 * 109.47070 * 304.99009 * 4 2 1 33 33 H 0.96705 * 114.00425 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.46870 * 174.99857 * 6 2 1 35 35 H 1.08995 * 109.46965 * 55.00094 * 6 2 1 36 36 H 0.97000 * 120.00201 * 0.02562 * 7 6 2 37 37 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 38 38 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 39 39 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.6618 0.0168 -2.4130 6 6 2.0401 -0.7213 1.2492 7 7 1.6526 0.0353 2.4423 8 6 1.9966 -0.4131 3.6658 9 8 2.6290 -1.4453 3.7794 10 7 1.6406 0.2833 4.7634 11 6 1.9965 -0.1815 6.0307 12 7 2.6882 -1.3028 6.1476 13 6 3.0403 -1.7803 7.3265 14 6 2.7023 -1.1190 8.4904 15 6 1.9821 0.0652 8.4155 16 6 1.6263 0.5444 7.1627 17 8 0.9203 1.7002 7.0408 18 6 0.5735 2.3789 8.2496 19 6 -0.2120 3.6485 7.9143 20 6 -0.5783 4.3639 9.1890 21 1 -0.2809 3.9540 10.1430 22 6 -1.2938 5.5414 9.1376 23 7 -1.6563 6.0404 7.9760 24 14 -1.7472 6.4286 10.7176 25 1 -0.6709 7.3881 11.0730 26 1 -3.0222 7.1647 10.5236 27 1 -1.9090 5.4385 11.8124 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.1263 -0.7994 -1.2057 32 1 1.6053 -1.7198 -1.2952 33 1 1.9529 -0.3829 -3.2441 34 1 3.1264 -0.7995 1.2054 35 1 1.6055 -1.7198 1.2951 36 1 1.1484 0.8590 2.3517 37 1 1.1364 1.1070 4.6729 38 1 3.6012 -2.7016 7.3816 39 1 2.9961 -1.5188 9.4497 40 1 1.7059 0.6015 9.3112 41 1 1.4817 2.6461 8.7898 42 1 -0.0396 1.7254 8.8703 43 1 0.4013 4.3018 7.2938 44 1 -1.1202 3.3817 7.3739 45 1 -2.1593 6.8688 7.9398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188685691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:17 Heat of formation + Delta-G solvation = -82.262450 kcal Electronic energy + Delta-G solvation = -26488.416560 eV Core-core repulsion = 22506.621799 eV Total energy + Delta-G solvation = -3981.794761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89695 -39.62575 -38.07226 -37.71140 -35.78460 -34.66031 -33.47165 -32.76492 -31.52065 -30.50646 -29.03481 -27.13437 -25.82351 -25.36262 -23.46339 -22.72856 -21.19474 -20.83936 -20.46287 -18.67866 -18.21061 -17.72454 -17.33766 -16.22739 -16.15757 -15.97887 -15.78433 -15.50059 -15.20360 -14.68734 -14.59178 -14.26809 -14.12863 -13.91470 -13.88034 -13.46851 -12.94738 -12.81244 -12.75826 -12.40515 -11.99884 -11.91893 -11.64620 -11.41378 -11.07712 -11.06259 -10.99229 -10.68394 -10.67981 -10.39452 -10.36720 -10.04069 -9.77991 -9.41582 -9.26351 -9.08129 -9.05038 -8.52404 -7.61050 -6.18203 -4.23071 1.29523 1.48780 2.42429 3.22478 3.23350 3.28682 3.30909 3.55184 3.70029 4.06928 4.08258 4.33804 4.45448 4.51901 4.69749 4.76410 4.98470 5.04657 5.10480 5.14227 5.18727 5.22535 5.27945 5.43964 5.50155 5.56111 5.63115 5.86261 5.88095 5.91072 5.99555 6.07788 6.20739 6.32731 6.39413 6.55114 6.59754 6.84797 7.21240 7.35887 7.52657 7.63814 7.73838 7.88026 8.14312 8.27367 8.63939 8.82196 9.41896 10.93269 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.002605 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.850322 B =10747.141910 C =13256.641406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.086 0.914 4 C 0.084 3.916 5 O -0.572 6.572 6 C 0.148 3.852 7 N -0.744 5.744 8 C 0.697 3.303 9 O -0.536 6.536 10 N -0.661 5.661 11 C 0.347 3.653 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.163 4.163 15 C -0.147 4.147 16 C 0.065 3.935 17 O -0.317 6.317 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.381 0.619 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.420 0.580 38 H 0.156 0.844 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 -14.387 -13.451 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.104 0.896 4 C 0.006 3.994 5 O -0.377 6.377 6 C 0.023 3.977 7 N -0.402 5.402 8 C 0.397 3.603 9 O -0.408 6.408 10 N -0.311 5.311 11 C 0.113 3.887 12 N -0.157 5.157 13 C -0.080 4.080 14 C -0.185 4.185 15 C -0.173 4.173 16 C 0.013 3.987 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.258 0.742 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.954 -15.147 -13.995 22.103 hybrid contribution -0.737 1.463 1.412 2.163 sum 7.217 -13.683 -12.583 19.941 Atomic orbital electron populations 1.21801 0.93842 1.02252 1.02386 1.21340 0.97523 1.01033 0.92567 0.89566 1.22051 0.98183 0.94056 0.85141 1.86462 1.81561 1.53328 1.16369 1.21056 0.99974 0.94836 0.81826 1.45065 1.61748 1.29070 1.04346 1.15907 0.80586 0.83757 0.80086 1.91025 1.42027 1.22977 1.84772 1.42484 1.57996 1.27921 1.02680 1.17484 0.97069 0.91450 0.82678 1.67630 1.10942 1.09699 1.27395 1.22411 0.99284 0.99856 0.86490 1.21881 1.00520 0.95971 1.00087 1.21586 1.01058 0.98027 0.96648 1.19540 0.96819 0.89353 0.92997 1.86098 1.67648 1.32307 1.36872 1.23386 0.98813 0.95056 0.83519 1.19123 0.95087 0.88758 0.98082 1.20949 1.35999 1.07538 0.92122 0.92329 1.24982 0.95520 0.97127 0.96500 1.69963 1.38050 1.20658 1.24038 0.86482 0.78016 0.79754 0.83117 1.20461 1.21017 1.19743 0.91599 0.92561 0.92397 0.93236 0.93184 0.77236 0.91371 0.91268 0.76746 0.74235 0.82677 0.84837 0.83760 0.92960 0.92952 0.95375 0.95373 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.96 37.16 0.33 -0.81 16 2 C -0.11 -0.80 2.66 -90.62 -0.24 -1.04 16 3 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.08 0.54 6.43 37.16 0.24 0.78 16 5 O -0.57 -4.09 13.19 -35.23 -0.46 -4.56 16 6 C 0.15 1.36 5.06 -4.05 -0.02 1.34 16 7 N -0.74 -8.04 5.29 -65.23 -0.34 -8.38 16 8 C 0.70 10.43 8.53 -86.92 -0.74 9.68 16 9 O -0.54 -9.88 14.59 5.29 0.08 -9.80 16 10 N -0.66 -9.94 5.40 -15.67 -0.08 -10.02 16 11 C 0.35 5.88 7.45 -154.43 -1.15 4.73 16 12 N -0.44 -7.59 7.87 -12.22 -0.10 -7.68 16 13 C 0.08 1.06 11.17 -17.55 -0.20 0.86 16 14 C -0.16 -2.06 10.10 -39.44 -0.40 -2.46 16 15 C -0.15 -2.15 9.14 -39.17 -0.36 -2.51 16 16 C 0.06 1.09 6.72 -38.92 -0.26 0.83 16 17 O -0.32 -5.84 9.39 -19.69 -0.18 -6.03 16 18 C 0.07 1.31 4.70 37.16 0.17 1.48 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.09 9.11 -34.44 -0.31 -14.41 16 21 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 24 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 7.18 -51.93 -0.37 0.08 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.38 1.04 9.12 45.56 0.42 1.45 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.40 3.46 7.67 -40.82 -0.31 3.15 16 37 H 0.42 5.58 8.06 -40.82 -0.33 5.25 16 38 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 41 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 42 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -34.40 379.70 -8.75 -43.16 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.91 Total: 6.19 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -3.18 Total: 0.56 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.21 Total: -50.91 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.57 Total: -20.39 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.40 -8.75 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188685691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.104 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds