Wall clock time and date at job start Tue Mar 31 2020 14:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46685 * 2 1 4 4 C 1.53000 * 109.46552 * 240.00367 * 2 1 3 5 5 O 1.42891 * 109.47478 * 64.99668 * 4 2 1 6 6 C 1.52998 * 109.47306 * 120.00122 * 2 1 3 7 7 N 1.46496 * 109.46991 * 294.99800 * 6 2 1 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47574 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99892 * 24 22 20 27 27 H 1.48499 * 109.47067 * 329.99541 * 24 22 20 28 28 H 1.08990 * 109.47446 * 59.99732 * 1 2 3 29 29 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46654 * 299.99836 * 1 2 3 31 31 H 1.09004 * 109.46709 * 184.99542 * 4 2 1 32 32 H 1.09002 * 109.47070 * 304.99009 * 4 2 1 33 33 H 0.96705 * 114.00425 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.46870 * 174.99857 * 6 2 1 35 35 H 1.08995 * 109.46965 * 55.00094 * 6 2 1 36 36 H 0.97000 * 120.00201 * 0.02562 * 7 6 2 37 37 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 38 38 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 39 39 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.6618 0.0168 -2.4130 6 6 2.0401 -0.7213 1.2492 7 7 1.6526 0.0353 2.4423 8 6 1.9966 -0.4131 3.6658 9 8 2.6290 -1.4453 3.7794 10 7 1.6406 0.2833 4.7634 11 6 1.9965 -0.1815 6.0307 12 7 2.6882 -1.3028 6.1476 13 6 3.0403 -1.7803 7.3265 14 6 2.7023 -1.1190 8.4904 15 6 1.9821 0.0652 8.4155 16 6 1.6263 0.5444 7.1627 17 8 0.9203 1.7002 7.0408 18 6 0.5735 2.3789 8.2496 19 6 -0.2120 3.6485 7.9143 20 6 -0.5783 4.3639 9.1890 21 1 -0.2809 3.9540 10.1430 22 6 -1.2938 5.5414 9.1376 23 7 -1.6563 6.0404 7.9760 24 14 -1.7472 6.4286 10.7176 25 1 -0.6709 7.3881 11.0730 26 1 -3.0222 7.1647 10.5236 27 1 -1.9090 5.4385 11.8124 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.1263 -0.7994 -1.2057 32 1 1.6053 -1.7198 -1.2952 33 1 1.9529 -0.3829 -3.2441 34 1 3.1264 -0.7995 1.2054 35 1 1.6055 -1.7198 1.2951 36 1 1.1484 0.8590 2.3517 37 1 1.1364 1.1070 4.6729 38 1 3.6012 -2.7016 7.3816 39 1 2.9961 -1.5188 9.4497 40 1 1.7059 0.6015 9.3112 41 1 1.4817 2.6461 8.7898 42 1 -0.0396 1.7254 8.8703 43 1 0.4013 4.3018 7.2938 44 1 -1.1202 3.3817 7.3739 45 1 -2.1593 6.8688 7.9398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188685691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:16 Heat of formation + Delta-G solvation = -107.761497 kcal Electronic energy + Delta-G solvation = -26489.522282 eV Core-core repulsion = 22506.621799 eV Total energy + Delta-G solvation = -3982.900483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07565 -40.76589 -39.16705 -38.60562 -36.56133 -35.86894 -35.43376 -33.62446 -32.83331 -32.13141 -30.30010 -27.81480 -27.15946 -26.55300 -24.82137 -23.89875 -22.77069 -21.83651 -21.39717 -19.84757 -19.30002 -18.87957 -18.21926 -17.99313 -17.24718 -17.23116 -16.87159 -16.55012 -16.45772 -16.14851 -15.65397 -15.31988 -15.14197 -15.09737 -14.72139 -14.46432 -14.34178 -14.11960 -13.75159 -13.58900 -13.38266 -13.27612 -12.79678 -12.74093 -12.43574 -12.34138 -12.08352 -11.85229 -11.72056 -11.69811 -11.63268 -11.55811 -11.40022 -10.86937 -10.60458 -10.42401 -10.23733 -10.11266 -8.81156 -8.25454 -6.37847 0.16201 0.31971 1.39094 1.42798 1.43717 1.54637 2.08153 2.12911 2.44900 2.87408 2.92863 3.09906 3.37889 3.58623 3.83624 3.87652 3.88328 3.99985 4.15119 4.20443 4.30860 4.35216 4.48552 4.49492 4.52936 4.62497 4.71000 4.75983 4.89719 4.96488 4.98707 5.15514 5.20676 5.28484 5.32443 5.33161 5.42505 5.51170 5.52886 5.71240 5.81712 6.08659 6.36051 6.69675 6.77199 6.91954 7.15604 7.32204 7.51080 8.87214 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.002605 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.850322 B =10747.141910 C =13256.641406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.085 3.915 5 O -0.591 6.591 6 C 0.150 3.850 7 N -0.730 5.730 8 C 0.694 3.306 9 O -0.574 6.574 10 N -0.661 5.661 11 C 0.328 3.672 12 N -0.472 5.472 13 C 0.075 3.925 14 C -0.147 4.147 15 C -0.147 4.147 16 C 0.039 3.961 17 O -0.329 6.329 18 C 0.084 3.916 19 C 0.030 3.970 20 C -0.544 4.544 21 H 0.071 0.929 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.259 1.259 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.425 0.575 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.245 -15.339 -11.987 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.101 0.899 4 C 0.006 3.994 5 O -0.400 6.400 6 C 0.026 3.974 7 N -0.388 5.388 8 C 0.394 3.606 9 O -0.448 6.448 10 N -0.311 5.311 11 C 0.095 3.905 12 N -0.188 5.188 13 C -0.082 4.082 14 C -0.168 4.168 15 C -0.173 4.173 16 C -0.012 4.012 17 O -0.243 6.243 18 C 0.009 3.991 19 C -0.008 4.008 20 C -0.582 4.582 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.794 3.206 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.183 1.183 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.263 0.737 38 H 0.203 0.797 39 H 0.193 0.807 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.618 -16.094 -12.570 22.165 hybrid contribution -0.883 1.653 0.904 2.081 sum 7.735 -14.441 -11.666 20.111 Atomic orbital electron populations 1.21777 0.94006 1.02268 1.02033 1.21257 0.97257 1.00753 0.92459 0.89930 1.22039 0.98789 0.94102 0.84443 1.86406 1.81947 1.54133 1.17464 1.21126 0.99864 0.94730 0.81700 1.45027 1.60872 1.29305 1.03584 1.16080 0.80319 0.83376 0.80835 1.90982 1.43857 1.24576 1.85423 1.42510 1.57969 1.28056 1.02597 1.17680 0.97700 0.91837 0.83235 1.67681 1.11762 1.10055 1.29270 1.23062 0.98470 1.00620 0.86063 1.22271 0.98514 0.94533 1.01476 1.21889 1.00650 0.98718 0.96080 1.19681 0.98182 0.89151 0.94142 1.86025 1.68704 1.33467 1.36085 1.22950 0.98776 0.93347 0.83992 1.18945 0.94186 0.90711 0.96912 1.21406 1.35699 1.07857 0.93189 0.91061 1.25965 0.95470 0.98146 0.99966 1.70100 1.39022 1.21262 1.26503 0.85363 0.77633 0.78583 0.78979 1.19737 1.20942 1.18332 0.92035 0.92359 0.92627 0.92262 0.92182 0.75095 0.91602 0.91597 0.75501 0.73740 0.79711 0.80687 0.82518 0.91784 0.91787 0.98046 0.98031 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.96 71.98 0.65 -1.56 16 2 C -0.10 -1.44 2.66 -10.79 -0.03 -1.47 16 3 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.08 1.00 6.43 71.98 0.46 1.46 16 5 O -0.59 -7.81 13.19 -148.98 -1.97 -9.77 16 6 C 0.15 2.74 5.06 86.38 0.44 3.18 16 7 N -0.73 -15.96 5.29 -478.56 -2.53 -18.49 16 8 C 0.69 21.19 8.53 179.06 1.53 22.72 16 9 O -0.57 -21.48 14.59 -4.00 -0.06 -21.54 16 10 N -0.66 -20.43 5.40 -321.75 -1.74 -22.17 16 11 C 0.33 11.18 7.45 132.98 0.99 12.17 16 12 N -0.47 -15.94 7.87 -192.57 -1.52 -17.46 16 13 C 0.07 1.90 11.17 84.63 0.95 2.84 16 14 C -0.15 -3.24 10.10 22.36 0.23 -3.01 16 15 C -0.15 -4.01 9.14 22.53 0.21 -3.80 16 16 C 0.04 1.31 6.72 22.70 0.15 1.46 16 17 O -0.33 -12.31 9.39 -93.36 -0.88 -13.19 16 18 C 0.08 3.28 4.70 71.98 0.34 3.62 16 19 C 0.03 1.50 5.34 29.85 0.16 1.66 16 20 C -0.54 -29.03 9.11 25.60 0.23 -28.80 16 21 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 22 C 0.00 0.18 5.46 84.65 0.46 0.64 16 23 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 24 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 28 H 0.06 1.01 7.82 -2.39 -0.02 0.99 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.86 7.18 -2.38 -0.02 0.84 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.40 1.66 9.12 -74.05 -0.68 0.99 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.41 7.21 7.67 -92.71 -0.71 6.50 16 37 H 0.42 11.79 8.06 -92.71 -0.75 11.05 16 38 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.16 3.83 6.44 -2.91 -0.02 3.81 16 41 H 0.06 2.34 7.70 -2.39 -0.02 2.32 16 42 H 0.06 2.34 7.70 -2.39 -0.02 2.32 16 43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -75.16 379.70 -0.71 -75.87 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -1.10 Total: 25.77 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.76 Total: 11.13 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.50 Total: -112.32 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -2.90 Total: -44.50 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -75.16 -0.71 -75.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188685691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.890 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds