Wall clock time and date at job start Tue Mar 31 2020 14:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47177 * 2 1 4 4 C 1.53002 * 109.46970 * 119.99712 * 2 1 3 5 5 O 1.42904 * 109.47049 * 294.99622 * 4 2 1 6 6 C 1.53006 * 109.47268 * 239.99518 * 2 1 3 7 7 N 1.46500 * 109.46839 * 65.00069 * 6 2 1 8 8 C 1.34775 * 119.99508 * 179.97438 * 7 6 2 9 9 O 1.21579 * 120.00476 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99551 * 179.97438 * 8 7 6 11 11 C 1.39588 * 119.99777 * 180.02562 * 10 8 7 12 12 N 1.32263 * 119.72507 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68622 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.08996 * 109.47083 * 60.00750 * 1 2 3 29 29 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47101 * 300.00350 * 1 2 3 31 31 H 1.08997 * 109.47587 * 55.00493 * 4 2 1 32 32 H 1.09001 * 109.47284 * 175.00097 * 4 2 1 33 33 H 0.96705 * 113.99732 * 179.97438 * 5 4 2 34 34 H 1.09000 * 109.47126 * 305.00078 * 6 2 1 35 35 H 1.09003 * 109.46692 * 184.99958 * 6 2 1 36 36 H 0.97000 * 120.00248 * 0.02562 * 7 6 2 37 37 H 0.97000 * 120.00205 * 0.02562 * 10 8 7 38 38 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.32601 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.77692 * 180.27509 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.6619 0.0170 2.4131 6 6 2.0400 -0.7214 -1.2492 7 7 1.6525 0.0352 -2.4424 8 6 1.9965 -0.4134 -3.6658 9 8 2.6281 -1.4460 -3.7794 10 7 1.6395 0.2824 -4.7636 11 6 1.9954 -0.1824 -6.0308 12 7 2.6834 -1.3060 -6.1479 13 6 3.0405 -1.7805 -7.3264 14 6 2.7063 -1.1169 -8.4901 15 6 1.9797 0.0633 -8.4157 16 6 1.6221 0.5416 -7.1629 17 8 0.9141 1.6961 -7.0413 18 6 0.5717 2.3775 -8.2499 19 6 -0.2179 3.6445 -7.9148 20 6 -0.5784 4.3634 -9.1893 21 1 -0.2744 3.9575 -10.1428 22 6 -1.2955 5.5399 -9.1380 23 7 -1.6653 6.0346 -7.9768 24 14 -1.7430 6.4307 -10.7177 25 1 -1.2139 5.6730 -11.8802 26 1 -3.2204 6.5354 -10.8255 27 1 -1.1500 7.7921 -10.7034 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6054 -1.7198 1.2953 32 1 3.1263 -0.7994 1.2057 33 1 1.9525 -0.3831 3.2442 34 1 1.6054 -1.7199 -1.2951 35 1 3.1264 -0.7995 -1.2055 36 1 1.1489 0.8593 -2.3518 37 1 1.1353 1.1061 -4.6730 38 1 3.6024 -2.7012 -7.3814 39 1 3.0035 -1.5147 -9.4492 40 1 1.7021 0.5987 -9.3115 41 1 -0.0376 1.7247 -8.8750 42 1 1.4820 2.6474 -8.7853 43 1 -1.1281 3.3744 -7.3796 44 1 0.3911 4.2975 -7.2895 45 1 -2.1701 6.8620 -7.9407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188685716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:19 Heat of formation + Delta-G solvation = -107.786717 kcal Electronic energy + Delta-G solvation = -26489.661599 eV Core-core repulsion = 22506.760023 eV Total energy + Delta-G solvation = -3982.901576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07624 -40.76640 -39.16712 -38.60497 -36.56051 -35.86996 -35.43464 -33.62472 -32.83333 -32.13144 -30.30018 -27.81499 -27.16080 -26.55287 -24.82183 -23.89865 -22.77131 -21.83647 -21.39717 -19.84772 -19.30010 -18.88005 -18.21934 -17.99552 -17.24747 -17.23081 -16.87114 -16.55006 -16.45490 -16.14863 -15.65327 -15.31994 -15.14139 -15.09932 -14.72058 -14.46441 -14.34730 -14.12102 -13.75110 -13.59012 -13.38348 -13.27360 -12.78207 -12.76862 -12.43038 -12.34193 -12.08290 -11.85346 -11.71966 -11.70185 -11.62718 -11.55928 -11.38162 -10.86980 -10.61318 -10.42387 -10.23730 -10.11257 -8.81140 -8.25648 -6.37917 0.16238 0.31983 1.39126 1.42417 1.42874 1.55695 2.08195 2.12890 2.44799 2.87430 2.92894 3.09806 3.37878 3.58618 3.83647 3.87644 3.88336 3.99997 4.15138 4.20425 4.30861 4.35240 4.48548 4.49490 4.52935 4.62516 4.70990 4.75992 4.89733 4.96508 4.98715 5.15534 5.20664 5.28531 5.32528 5.33193 5.42504 5.51143 5.52954 5.71314 5.81737 6.08643 6.36064 6.69696 6.77337 6.91887 7.15630 7.32170 7.51101 8.87220 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.002605 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.780808 B =10747.156685 C =13256.708067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.084 3.916 5 O -0.591 6.591 6 C 0.150 3.850 7 N -0.730 5.730 8 C 0.694 3.306 9 O -0.574 6.574 10 N -0.661 5.661 11 C 0.328 3.672 12 N -0.473 5.473 13 C 0.075 3.925 14 C -0.147 4.147 15 C -0.147 4.147 16 C 0.039 3.961 17 O -0.329 6.329 18 C 0.084 3.916 19 C 0.029 3.971 20 C -0.543 4.543 21 H 0.071 0.929 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.970 3.030 25 H -0.257 1.257 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.425 0.575 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 -15.322 11.995 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.101 0.899 4 C 0.006 3.994 5 O -0.400 6.400 6 C 0.026 3.974 7 N -0.388 5.388 8 C 0.394 3.606 9 O -0.448 6.448 10 N -0.311 5.311 11 C 0.096 3.904 12 N -0.188 5.188 13 C -0.082 4.082 14 C -0.168 4.168 15 C -0.173 4.173 16 C -0.012 4.012 17 O -0.243 6.243 18 C 0.009 3.991 19 C -0.008 4.008 20 C -0.580 4.580 21 H 0.089 0.911 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.795 3.205 25 H -0.181 1.181 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.263 0.737 38 H 0.203 0.797 39 H 0.193 0.807 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.667 -16.082 12.575 22.179 hybrid contribution -0.893 1.658 -0.897 2.086 sum 7.774 -14.424 11.678 20.122 Atomic orbital electron populations 1.21774 0.94008 1.02268 1.02033 1.21257 0.97255 1.00753 0.92457 0.89927 1.22041 0.98791 0.94101 0.84443 1.86410 1.81990 1.54090 1.17463 1.21130 0.99862 0.94731 0.81699 1.45028 1.60894 1.29283 1.03586 1.16078 0.80317 0.83377 0.80835 1.90980 1.43905 1.24524 1.85420 1.42510 1.57946 1.28087 1.02593 1.17678 0.97727 0.91808 0.83234 1.67678 1.11812 1.10011 1.29272 1.23059 0.98441 1.00641 0.86072 1.22270 0.98478 0.94574 1.01476 1.21889 1.00596 0.98769 0.96084 1.19682 0.98131 0.89207 0.94136 1.86025 1.68638 1.33506 1.36109 1.22949 0.98812 0.93306 0.83997 1.18950 0.94176 0.90733 0.96924 1.21434 1.35527 1.07862 0.93224 0.91067 1.25966 0.95483 0.98166 0.99958 1.70106 1.38849 1.21458 1.26473 0.85314 0.77919 0.78213 0.79092 1.18107 1.20485 1.20497 0.92621 0.92362 0.92041 0.92181 0.92260 0.75098 0.91597 0.91601 0.75500 0.73740 0.79712 0.80688 0.82521 0.91784 0.91791 0.98021 0.98036 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.96 71.98 0.65 -1.56 16 2 C -0.10 -1.44 2.66 -10.79 -0.03 -1.47 16 3 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.08 1.00 6.43 71.98 0.46 1.46 16 5 O -0.59 -7.81 13.20 -148.98 -1.97 -9.77 16 6 C 0.15 2.74 5.06 86.38 0.44 3.18 16 7 N -0.73 -15.96 5.29 -478.53 -2.53 -18.49 16 8 C 0.69 21.19 8.53 179.05 1.53 22.72 16 9 O -0.57 -21.47 14.59 -3.97 -0.06 -21.53 16 10 N -0.66 -20.42 5.40 -321.76 -1.74 -22.16 16 11 C 0.33 11.18 7.45 132.99 0.99 12.17 16 12 N -0.47 -15.94 7.87 -192.59 -1.52 -17.46 16 13 C 0.07 1.90 11.17 84.63 0.95 2.84 16 14 C -0.15 -3.24 10.10 22.36 0.23 -3.01 16 15 C -0.15 -4.01 9.14 22.53 0.21 -3.80 16 16 C 0.04 1.31 6.72 22.70 0.15 1.46 16 17 O -0.33 -12.31 9.39 -93.36 -0.88 -13.18 16 18 C 0.08 3.28 4.70 71.98 0.34 3.62 16 19 C 0.03 1.49 5.34 29.85 0.16 1.64 16 20 C -0.54 -28.97 9.11 25.60 0.23 -28.74 16 21 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 22 C 0.00 0.16 5.46 84.65 0.46 0.62 16 23 N -0.93 -54.44 13.29 21.45 0.28 -54.16 16 24 Si 0.97 42.04 29.54 68.60 2.03 44.06 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 28 H 0.05 0.86 7.18 -2.39 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.01 7.82 -2.39 -0.02 0.99 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.40 1.66 9.12 -74.05 -0.68 0.99 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.41 7.20 7.67 -92.71 -0.71 6.49 16 37 H 0.42 11.79 8.06 -92.71 -0.75 11.04 16 38 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.16 3.83 6.44 -2.91 -0.02 3.81 16 41 H 0.06 2.34 7.69 -2.39 -0.02 2.32 16 42 H 0.06 2.34 7.71 -2.39 -0.02 2.32 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.16 379.70 -0.71 -75.88 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -1.10 Total: 25.66 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.76 Total: 11.15 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -5.50 Total: -112.26 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.90 Total: -44.48 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.16 -0.71 -75.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188685716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.911 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds