Wall clock time and date at job start Tue Mar 31 2020 14:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47084 * 2 1 4 4 O 1.42906 * 109.46963 * 239.99918 * 2 1 3 5 5 C 1.53000 * 109.46761 * 119.99906 * 2 1 3 6 6 N 1.46509 * 109.46871 * 184.99920 * 5 2 1 7 7 C 1.46501 * 119.99749 * 269.99952 * 6 5 2 8 8 C 1.34769 * 120.00005 * 89.99728 * 6 5 2 9 9 O 1.21589 * 120.00188 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00282 * 179.97438 * 8 6 5 11 11 C 1.39582 * 120.00497 * 180.02562 * 10 8 6 12 12 N 1.32273 * 119.72229 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68673 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.09003 * 109.47394 * 60.00218 * 1 2 3 29 29 H 1.09005 * 109.47449 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47421 * 300.00345 * 1 2 3 31 31 H 0.96697 * 114.00148 * 60.00183 * 4 2 1 32 32 H 1.09000 * 109.47283 * 65.00700 * 5 2 1 33 33 H 1.08997 * 109.47164 * 304.99420 * 5 2 1 34 34 H 1.08999 * 109.47074 * 269.99796 * 7 6 5 35 35 H 1.09005 * 109.47305 * 30.00450 * 7 6 5 36 36 H 1.09007 * 109.46728 * 149.99984 * 7 6 5 37 37 H 0.97000 * 119.99815 * 0.02562 * 10 8 6 38 38 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.32603 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.78184 * 180.27511 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2493 6 7 3.5000 -0.6179 1.3110 7 6 4.3342 -1.6424 0.6780 8 6 4.0757 0.4197 1.9500 9 8 3.3833 1.2697 2.4758 10 7 5.4189 0.5145 2.0073 11 6 6.0152 1.5888 2.6696 12 7 5.2567 2.5110 3.2387 13 6 5.7792 3.5428 3.8743 14 6 7.1477 3.6992 3.9700 15 6 7.9827 2.7527 3.3926 16 6 7.4057 1.6808 2.7262 17 8 8.1844 0.7317 2.1414 18 6 9.5997 0.9000 2.2445 19 6 10.3040 -0.2569 1.5326 20 6 11.7965 -0.0791 1.6408 21 1 12.2022 0.7739 2.1645 22 6 12.6442 -1.0048 1.0703 23 7 13.9468 -0.8494 1.1643 24 14 11.9426 -2.4798 0.1639 25 1 11.7551 -2.1371 -1.2688 26 1 12.8810 -3.6247 0.2803 27 1 10.6336 -2.8501 0.7595 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7210 -0.2702 -1.9980 32 1 1.7516 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1370 34 1 4.5424 -2.4359 1.3957 35 1 3.8090 -2.0586 -0.1817 36 1 5.2722 -1.1949 0.3490 37 1 5.9713 -0.1638 1.5882 38 1 5.1270 4.2756 4.3260 39 1 7.5644 4.5474 4.4929 40 1 9.0563 2.8499 3.4574 41 1 9.8890 0.9095 3.2954 42 1 9.8884 1.8427 1.7796 43 1 10.0153 -1.1994 1.9978 44 1 10.0148 -0.2668 0.4818 45 1 14.5431 -1.5009 0.7632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188701677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:07 Heat of formation + Delta-G solvation = -63.192232 kcal Electronic energy + Delta-G solvation = -27356.759733 eV Core-core repulsion = 23375.791918 eV Total energy + Delta-G solvation = -3980.967814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02428 -39.82315 -38.02106 -37.65590 -35.29402 -34.87129 -33.44156 -31.89154 -31.55690 -30.82470 -29.22371 -27.60983 -26.10709 -25.58567 -23.41919 -22.79593 -21.83039 -20.72912 -19.91322 -18.77878 -18.00596 -17.65348 -17.23311 -16.61053 -16.14875 -16.03068 -15.85482 -15.62864 -14.82277 -14.70818 -14.27948 -14.23946 -14.00143 -13.81540 -13.53000 -13.09075 -13.08427 -12.94501 -12.64292 -12.50580 -12.33427 -12.20102 -12.12468 -12.00353 -11.36681 -11.24028 -10.98277 -10.72874 -10.44504 -10.33242 -10.22539 -10.14552 -9.93146 -9.44334 -9.23931 -9.08579 -8.77143 -8.69496 -7.66323 -6.20239 -4.21930 1.25354 1.44173 2.37854 3.15433 3.22423 3.30290 3.33339 3.45622 3.61693 3.93255 4.04381 4.32006 4.59689 4.60634 4.75578 4.83933 4.94662 4.97508 5.06696 5.12655 5.13589 5.23430 5.29178 5.43889 5.46370 5.52280 5.57339 5.69939 5.76294 5.78043 5.80099 6.02237 6.15643 6.30092 6.31421 6.39900 6.56599 6.74833 6.96437 7.12207 7.33703 7.50914 7.59240 7.68575 8.20567 8.30935 8.58718 8.80057 9.39428 10.92181 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003247 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.890310 B = 8622.582746 C =10776.917681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.060 0.940 4 O -0.565 6.565 5 C 0.144 3.856 6 N -0.626 5.626 7 C 0.077 3.923 8 C 0.697 3.303 9 O -0.537 6.537 10 N -0.661 5.661 11 C 0.347 3.653 12 N -0.442 5.442 13 C 0.078 3.922 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.063 3.937 17 O -0.321 6.321 18 C 0.074 3.926 19 C -0.007 4.007 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.376 0.624 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.951 2.417 -0.493 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.022 3.978 3 H 0.078 0.922 4 O -0.371 6.371 5 C 0.020 3.980 6 N -0.364 5.364 7 C -0.066 4.066 8 C 0.398 3.602 9 O -0.409 6.409 10 N -0.312 5.312 11 C 0.113 3.887 12 N -0.157 5.157 13 C -0.079 4.079 14 C -0.184 4.184 15 C -0.170 4.170 16 C 0.011 3.989 17 O -0.234 6.234 18 C 0.000 4.000 19 C -0.045 4.045 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.708 3.292 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.188 1.188 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.258 0.742 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.998 2.234 0.110 25.098 hybrid contribution 1.043 -0.504 -1.060 1.571 sum -23.955 1.730 -0.950 24.036 Atomic orbital electron populations 1.22437 0.95964 1.02801 1.02880 1.22320 0.92800 0.96333 0.86337 0.92171 1.86499 1.77260 1.57460 1.15896 1.21386 0.78611 1.01253 0.96723 1.46953 1.06604 1.25126 1.57739 1.21822 0.95223 0.91101 0.98478 1.15917 0.81780 0.82452 0.80015 1.91008 1.61070 1.39860 1.48944 1.42671 1.06166 1.25858 1.56503 1.17517 0.84880 0.89929 0.96368 1.67647 1.37163 1.01792 1.09080 1.22430 0.92977 0.95087 0.97359 1.21894 0.94409 1.00250 1.01887 1.21609 1.01563 0.94284 0.99593 1.19490 0.89777 0.91817 0.97815 1.86045 1.20866 1.44865 1.71642 1.23132 0.74108 1.01707 1.01086 1.19582 0.95762 0.93230 0.95919 1.20811 0.87796 1.11091 1.36958 0.90722 1.24937 0.94660 0.97869 0.95523 1.69887 1.02268 1.36435 1.44793 0.86753 0.79468 0.82463 0.80535 1.20045 1.21156 1.18777 0.92171 0.91719 0.91207 0.77745 0.89821 0.88306 0.92625 0.89535 0.91571 0.74156 0.82619 0.84725 0.83606 0.92322 0.92352 0.95386 0.95832 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 9.53 37.16 0.35 -0.83 16 2 C 0.08 0.73 3.82 -26.73 -0.10 0.63 16 3 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 4 O -0.57 -4.86 12.14 -35.23 -0.43 -5.29 16 5 C 0.14 1.41 5.09 -4.04 -0.02 1.39 16 6 N -0.63 -7.42 2.84 -187.34 -0.53 -7.96 16 7 C 0.08 0.75 10.02 59.85 0.60 1.34 16 8 C 0.70 10.67 8.24 -86.93 -0.72 9.95 16 9 O -0.54 -9.72 14.17 5.29 0.07 -9.65 16 10 N -0.66 -10.10 5.26 -15.67 -0.08 -10.18 16 11 C 0.35 5.82 7.45 -154.43 -1.15 4.67 16 12 N -0.44 -7.48 7.87 -12.22 -0.10 -7.57 16 13 C 0.08 1.06 11.17 -17.56 -0.20 0.87 16 14 C -0.16 -2.03 10.10 -39.44 -0.40 -2.43 16 15 C -0.14 -2.08 9.14 -39.18 -0.36 -2.44 16 16 C 0.06 1.03 6.72 -38.92 -0.26 0.77 16 17 O -0.32 -5.70 9.39 -19.69 -0.18 -5.88 16 18 C 0.07 1.40 4.70 37.16 0.17 1.57 16 19 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 20 C -0.53 -14.29 9.66 -34.44 -0.33 -14.62 16 21 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 23 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 24 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.38 1.91 9.08 45.56 0.41 2.33 16 32 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.10 1.03 7.42 -51.93 -0.39 0.64 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.77 7.12 -51.93 -0.37 0.40 16 36 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 37 H 0.42 5.76 5.78 -40.82 -0.24 5.52 16 38 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.15 1.96 6.44 -52.49 -0.34 1.62 16 41 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 42 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 43 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 44 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -34.12 372.94 -7.93 -42.05 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.78 Total: 6.03 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.63 Total: 2.52 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.06 Total: -51.47 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.54 Total: -20.82 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.12 -7.93 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188701677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.145 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds