Wall clock time and date at job start Tue Mar 31 2020 14:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47084 * 2 1 4 4 O 1.42906 * 109.46963 * 239.99918 * 2 1 3 5 5 C 1.53000 * 109.46761 * 119.99906 * 2 1 3 6 6 N 1.46509 * 109.46871 * 184.99920 * 5 2 1 7 7 C 1.46501 * 119.99749 * 269.99952 * 6 5 2 8 8 C 1.34769 * 120.00005 * 89.99728 * 6 5 2 9 9 O 1.21589 * 120.00188 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00282 * 179.97438 * 8 6 5 11 11 C 1.39582 * 120.00497 * 180.02562 * 10 8 6 12 12 N 1.32273 * 119.72229 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68673 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.09003 * 109.47394 * 60.00218 * 1 2 3 29 29 H 1.09005 * 109.47449 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47421 * 300.00345 * 1 2 3 31 31 H 0.96697 * 114.00148 * 60.00183 * 4 2 1 32 32 H 1.09000 * 109.47283 * 65.00700 * 5 2 1 33 33 H 1.08997 * 109.47164 * 304.99420 * 5 2 1 34 34 H 1.08999 * 109.47074 * 269.99796 * 7 6 5 35 35 H 1.09005 * 109.47305 * 30.00450 * 7 6 5 36 36 H 1.09007 * 109.46728 * 149.99984 * 7 6 5 37 37 H 0.97000 * 119.99815 * 0.02562 * 10 8 6 38 38 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.32603 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.78184 * 180.27511 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2493 6 7 3.5000 -0.6179 1.3110 7 6 4.3342 -1.6424 0.6780 8 6 4.0757 0.4197 1.9500 9 8 3.3833 1.2697 2.4758 10 7 5.4189 0.5145 2.0073 11 6 6.0152 1.5888 2.6696 12 7 5.2567 2.5110 3.2387 13 6 5.7792 3.5428 3.8743 14 6 7.1477 3.6992 3.9700 15 6 7.9827 2.7527 3.3926 16 6 7.4057 1.6808 2.7262 17 8 8.1844 0.7317 2.1414 18 6 9.5997 0.9000 2.2445 19 6 10.3040 -0.2569 1.5326 20 6 11.7965 -0.0791 1.6408 21 1 12.2022 0.7739 2.1645 22 6 12.6442 -1.0048 1.0703 23 7 13.9468 -0.8494 1.1643 24 14 11.9426 -2.4798 0.1639 25 1 11.7551 -2.1371 -1.2688 26 1 12.8810 -3.6247 0.2803 27 1 10.6336 -2.8501 0.7595 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7210 -0.2702 -1.9980 32 1 1.7516 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1370 34 1 4.5424 -2.4359 1.3957 35 1 3.8090 -2.0586 -0.1817 36 1 5.2722 -1.1949 0.3490 37 1 5.9713 -0.1638 1.5882 38 1 5.1270 4.2756 4.3260 39 1 7.5644 4.5474 4.4929 40 1 9.0563 2.8499 3.4574 41 1 9.8890 0.9095 3.2954 42 1 9.8884 1.8427 1.7796 43 1 10.0153 -1.1994 1.9978 44 1 10.0148 -0.2668 0.4818 45 1 14.5431 -1.5009 0.7632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188701677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:06 Heat of formation + Delta-G solvation = -87.360300 kcal Electronic energy + Delta-G solvation = -27357.807739 eV Core-core repulsion = 23375.791918 eV Total energy + Delta-G solvation = -3982.015820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16553 -40.92731 -39.22666 -38.50454 -36.23105 -36.02877 -35.39509 -33.06272 -32.69732 -32.18444 -30.41378 -28.35557 -27.31520 -26.97128 -24.69088 -23.95906 -22.75635 -22.26646 -21.00383 -19.90666 -19.38191 -18.75198 -18.26509 -18.10556 -17.29705 -17.24517 -16.89936 -16.75209 -16.28047 -15.69079 -15.66782 -15.34453 -15.20475 -14.88620 -14.74688 -14.36236 -14.13742 -14.05242 -13.73365 -13.52876 -13.43168 -13.27939 -12.92980 -12.85035 -12.78271 -12.70497 -12.18899 -12.06458 -11.87716 -11.82020 -11.64402 -11.53676 -11.44505 -10.96854 -10.79948 -10.42517 -10.24187 -9.71257 -8.83056 -8.32931 -6.39770 0.13683 0.29120 1.36838 1.38387 1.40004 1.51649 2.03601 2.09857 2.34839 2.64779 2.90273 3.02689 3.31499 3.53477 3.84942 3.88047 3.93649 4.07677 4.12424 4.16639 4.24588 4.26370 4.30213 4.45043 4.47573 4.59989 4.67548 4.75375 4.84558 4.93780 4.95388 5.01901 5.06396 5.14368 5.21464 5.27269 5.32880 5.41189 5.51454 5.60823 5.74342 6.17254 6.29480 6.56706 6.66781 6.84024 7.08928 7.25531 7.47622 8.82610 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003247 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.890310 B = 8622.582746 C =10776.917681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.089 3.911 3 H 0.032 0.968 4 O -0.575 6.575 5 C 0.137 3.863 6 N -0.622 5.622 7 C 0.076 3.924 8 C 0.691 3.309 9 O -0.572 6.572 10 N -0.661 5.661 11 C 0.330 3.670 12 N -0.472 5.472 13 C 0.077 3.923 14 C -0.148 4.148 15 C -0.146 4.146 16 C 0.040 3.960 17 O -0.326 6.326 18 C 0.086 3.914 19 C -0.005 4.005 20 C -0.535 4.535 21 H 0.042 0.958 22 C 0.012 3.988 23 N -0.944 5.944 24 Si 0.948 3.052 25 H -0.266 1.266 26 H -0.284 1.284 27 H -0.245 1.245 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.391 0.609 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.423 0.577 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.155 0.845 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.745 1.971 -0.838 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.029 3.971 3 H 0.050 0.950 4 O -0.383 6.383 5 C 0.014 3.986 6 N -0.358 5.358 7 C -0.067 4.067 8 C 0.392 3.608 9 O -0.447 6.447 10 N -0.312 5.312 11 C 0.097 3.903 12 N -0.188 5.188 13 C -0.080 4.080 14 C -0.169 4.169 15 C -0.173 4.173 16 C -0.011 4.011 17 O -0.240 6.240 18 C 0.012 3.988 19 C -0.043 4.043 20 C -0.573 4.573 21 H 0.061 0.939 22 C -0.186 4.186 23 N -0.584 5.584 24 Si 0.771 3.229 25 H -0.191 1.191 26 H -0.210 1.210 27 H -0.168 1.168 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.240 0.760 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.263 0.737 38 H 0.203 0.797 39 H 0.192 0.808 40 H 0.172 0.828 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.821 1.771 -0.260 26.881 hybrid contribution 1.578 -0.231 -0.892 1.827 sum -25.243 1.540 -1.152 25.316 Atomic orbital electron populations 1.22361 0.93909 1.03590 1.03414 1.22141 0.94259 0.94532 0.86191 0.94967 1.86449 1.77659 1.57619 1.16574 1.21586 0.77416 1.02611 0.96937 1.47075 1.07611 1.24427 1.56726 1.21951 0.94939 0.90726 0.99067 1.16125 0.81631 0.82880 0.80128 1.90964 1.61705 1.41392 1.50646 1.42685 1.06305 1.25801 1.56450 1.17694 0.85090 0.90513 0.97027 1.67693 1.38099 1.02844 1.10122 1.23053 0.94190 0.94563 0.96179 1.22267 0.93676 1.00445 1.00534 1.21879 1.02330 0.94037 0.99049 1.19604 0.89584 0.92576 0.99331 1.85970 1.19851 1.45712 1.72436 1.22762 0.75023 1.00248 1.00793 1.19435 0.93311 0.94802 0.96717 1.21116 0.90348 1.09907 1.35946 0.93927 1.25891 0.94873 1.01241 0.96601 1.70030 1.03892 1.37962 1.46483 0.85690 0.79398 0.78370 0.79451 1.19081 1.20967 1.16786 0.91014 0.90724 0.91348 0.75981 0.87620 0.89299 0.91304 0.88446 0.91854 0.73656 0.79705 0.80841 0.82773 0.91973 0.91999 0.95120 0.95287 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.53 71.98 0.69 -1.32 16 2 C 0.09 1.51 3.82 30.59 0.12 1.63 16 3 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 4 O -0.57 -9.01 12.14 -148.98 -1.81 -10.82 16 5 C 0.14 2.58 5.09 86.38 0.44 3.02 16 6 N -0.62 -14.40 2.84 -864.89 -2.45 -16.85 16 7 C 0.08 1.36 10.02 127.77 1.28 2.64 16 8 C 0.69 21.30 8.24 179.06 1.48 22.78 16 9 O -0.57 -21.13 14.17 -4.00 -0.06 -21.18 16 10 N -0.66 -20.23 5.26 -321.77 -1.69 -21.93 16 11 C 0.33 10.99 7.45 132.98 0.99 11.98 16 12 N -0.47 -15.73 7.87 -192.59 -1.52 -17.24 16 13 C 0.08 1.94 11.17 84.63 0.95 2.89 16 14 C -0.15 -3.29 10.10 22.36 0.23 -3.06 16 15 C -0.15 -3.99 9.14 22.53 0.21 -3.79 16 16 C 0.04 1.29 6.72 22.70 0.15 1.44 16 17 O -0.33 -11.34 9.39 -93.36 -0.88 -12.22 16 18 C 0.09 3.21 4.70 71.98 0.34 3.55 16 19 C -0.01 -0.23 4.41 29.85 0.13 -0.10 16 20 C -0.54 -29.20 9.66 25.60 0.25 -28.95 16 21 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 22 C 0.01 0.67 5.47 84.65 0.46 1.13 16 23 N -0.94 -56.94 13.96 21.45 0.30 -56.64 16 24 Si 0.95 42.18 27.47 68.60 1.88 44.07 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.39 3.36 9.08 -74.06 -0.67 2.69 16 32 H 0.11 1.51 8.07 -2.39 -0.02 1.49 16 33 H 0.09 1.85 7.42 -2.39 -0.02 1.83 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.55 7.12 -2.38 -0.02 1.54 16 36 H 0.06 1.18 6.36 -2.38 -0.02 1.16 16 37 H 0.42 11.58 5.78 -92.71 -0.54 11.04 16 38 H 0.19 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.15 3.89 6.44 -2.91 -0.02 3.87 16 41 H 0.06 2.25 7.69 -2.39 -0.02 2.23 16 42 H 0.06 2.24 7.71 -2.39 -0.02 2.22 16 43 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 44 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 45 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.83 372.94 1.24 -73.59 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.24 Total: 25.36 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 7.70 Total: 13.86 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -5.36 Total: -112.66 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -2.74 Total: -44.22 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.07 kcal Total: -74.83 1.24 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188701677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.771 kcal (2) G-P(sol) polarization free energy of solvation -74.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds