Wall clock time and date at job start Tue Mar 31 2020 14:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47165 * 2 1 4 4 C 1.46496 * 120.00247 * 269.99981 * 3 2 1 5 5 C 1.52998 * 109.47199 * 270.00381 * 4 3 2 6 6 O 1.42897 * 109.47482 * 64.99781 * 5 4 3 7 7 C 1.34776 * 119.99764 * 90.00141 * 3 2 1 8 8 O 1.21589 * 120.00100 * 180.02562 * 7 3 2 9 9 N 1.34775 * 120.00018 * 359.97438 * 7 3 2 10 10 C 1.39594 * 119.99902 * 179.97438 * 9 7 3 11 11 N 1.32268 * 119.72347 * 0.29564 * 10 9 7 12 12 C 1.31970 * 121.68397 * 180.28583 * 11 10 9 13 13 C 1.38074 * 120.95656 * 359.70589 * 12 11 10 14 14 C 1.38794 * 119.35179 * 359.97438 * 13 12 11 15 15 C 1.38781 * 118.44773 * 359.97438 * 14 13 12 16 16 O 1.35983 * 120.49767 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99537 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47593 * 300.00028 * 1 2 3 29 29 H 1.09003 * 109.47291 * 59.99704 * 1 2 3 30 30 H 1.08995 * 109.47159 * 240.00130 * 2 1 3 31 31 H 1.08998 * 109.46852 * 120.00129 * 2 1 3 32 32 H 1.09008 * 109.47023 * 29.99805 * 4 3 2 33 33 H 1.08993 * 109.47277 * 149.99837 * 4 3 2 34 34 H 1.08996 * 109.47080 * 185.00005 * 5 4 3 35 35 H 1.09007 * 109.46970 * 304.99336 * 5 4 3 36 36 H 0.96697 * 114.00123 * 180.02562 * 6 5 4 37 37 H 0.97000 * 120.00172 * 0.02562 * 9 7 3 38 38 H 1.08000 * 119.52522 * 179.72561 * 12 11 10 39 39 H 1.07997 * 120.32400 * 179.97438 * 13 12 11 40 40 H 1.07993 * 120.77632 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47490 * 59.99651 * 17 16 15 42 42 H 1.09001 * 109.47232 * 299.99005 * 17 16 15 43 43 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 44 44 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 45 45 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7104 6 8 3.8943 0.4433 -1.9936 7 6 2.2430 2.0165 1.1672 8 8 2.6478 3.1630 1.1673 9 7 2.0179 1.3813 2.3344 10 6 2.2510 2.0391 3.5433 11 7 2.6873 3.2878 3.5370 12 6 2.9258 3.9444 4.6566 13 6 2.7215 3.3499 5.8859 14 6 2.2580 2.0427 5.9409 15 6 2.0148 1.3769 4.7478 16 8 1.5606 0.0951 4.7530 17 6 1.3519 -0.5140 6.0288 18 6 0.8435 -1.9439 5.8342 19 6 0.6240 -2.5864 7.1795 20 1 0.8273 -2.0307 8.0830 21 6 0.1647 -3.8841 7.2571 22 7 -0.0824 -4.5610 6.1569 23 14 -0.1080 -4.6804 8.9246 24 1 -1.1128 -3.8980 9.6884 25 1 -0.6014 -6.0682 8.7358 26 1 1.1729 -4.7078 9.6755 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1383 34 1 3.9156 2.4162 -2.6063 35 1 4.3863 2.1342 -0.9131 36 1 4.7899 0.2173 -2.2797 37 1 1.6945 0.4668 2.3344 38 1 3.2856 4.9617 4.6107 39 1 2.9203 3.8966 6.7958 40 1 2.0898 1.5555 6.8899 41 1 0.6145 0.0604 6.5895 42 1 2.2922 -0.5343 6.5799 43 1 -0.0968 -1.9232 5.2832 44 1 1.5806 -2.5185 5.2733 45 1 -0.4059 -5.4738 6.2114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188714269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:29 Heat of formation + Delta-G solvation = -67.092276 kcal Electronic energy + Delta-G solvation = -27580.608914 eV Core-core repulsion = 23599.471981 eV Total energy + Delta-G solvation = -3981.136933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97022 -39.76508 -37.83350 -37.20877 -35.63632 -34.81101 -33.46186 -31.59750 -31.31827 -30.55982 -29.36483 -28.27077 -25.39731 -24.09533 -23.44851 -22.94663 -22.37025 -20.89158 -19.68748 -18.69580 -17.91077 -17.50485 -17.29747 -16.26610 -16.16168 -15.97572 -15.74161 -15.30216 -14.74884 -14.56780 -14.49580 -14.07066 -14.02451 -13.88162 -13.74221 -13.36578 -12.86451 -12.75735 -12.38875 -12.23905 -12.01425 -11.97235 -11.88860 -11.58832 -11.17619 -11.06264 -10.96884 -10.67899 -10.65897 -10.35366 -10.15670 -10.02378 -9.76624 -9.41474 -9.17209 -9.01042 -8.71608 -8.50958 -7.57856 -6.16932 -4.21870 1.31506 1.50608 2.46589 3.23961 3.24435 3.29177 3.30245 3.57036 3.67245 4.04558 4.11309 4.34698 4.66165 4.82831 4.91796 4.99611 4.99981 5.06878 5.13790 5.19797 5.20594 5.28372 5.35712 5.51637 5.54453 5.61899 5.73886 5.78935 5.88515 5.92329 6.08980 6.13225 6.22385 6.41946 6.42483 6.56662 6.67653 6.86867 7.37202 7.37769 7.54053 7.64967 7.71931 7.88959 8.15502 8.28003 8.67630 8.83053 9.42918 10.94428 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.003195 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.220383 B = 8761.021050 C =10636.371340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 N -0.621 5.621 4 C 0.137 3.863 5 C 0.058 3.942 6 O -0.571 6.571 7 C 0.699 3.301 8 O -0.539 6.539 9 N -0.660 5.660 10 C 0.347 3.653 11 N -0.442 5.442 12 C 0.076 3.924 13 C -0.164 4.164 14 C -0.146 4.146 15 C 0.064 3.936 16 O -0.317 6.317 17 C 0.066 3.934 18 C 0.027 3.973 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.377 0.623 37 H 0.420 0.580 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 12.812 -12.798 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 N -0.359 5.359 4 C 0.014 3.986 5 C -0.021 4.021 6 O -0.377 6.377 7 C 0.400 3.600 8 O -0.412 6.412 9 N -0.311 5.311 10 C 0.113 3.887 11 N -0.157 5.157 12 C -0.081 4.081 13 C -0.186 4.186 14 C -0.173 4.173 15 C 0.012 3.988 16 O -0.230 6.230 17 C -0.008 4.008 18 C -0.010 4.010 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.224 0.776 37 H 0.260 0.740 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.380 13.699 -13.742 20.136 hybrid contribution 0.127 -1.378 1.852 2.312 sum 5.507 12.321 -11.890 17.986 Atomic orbital electron populations 1.22252 0.95789 1.02808 1.02423 1.21597 0.94236 0.82122 1.03934 1.47131 1.69963 1.14576 1.04259 1.21354 0.94668 0.98569 0.84051 1.22692 0.98114 0.82379 0.98941 1.86464 1.35676 1.25239 1.90277 1.15925 0.79282 0.84678 0.80132 1.91000 1.49530 1.15365 1.85275 1.42698 1.68154 1.17703 1.02573 1.17539 0.98925 0.89450 0.82812 1.67644 1.12494 1.04889 1.30640 1.22410 0.99053 0.99821 0.86767 1.21872 1.02042 0.95201 0.99445 1.21578 1.02281 0.95855 0.97574 1.19545 0.99352 0.86964 0.92959 1.86100 1.79497 1.21902 1.35472 1.23386 0.99484 0.96899 0.81009 1.19114 0.97283 0.86404 0.98179 1.20911 1.45782 0.98307 0.91693 0.92406 1.24974 0.95083 0.97097 0.96910 1.69953 1.44542 1.10983 1.27180 0.86545 0.78695 0.78412 0.83723 1.20082 1.21090 1.20076 0.90946 0.92379 0.92373 0.88823 0.90864 0.89869 0.88364 0.92900 0.93046 0.77613 0.74048 0.82715 0.84869 0.83779 0.92974 0.92977 0.95369 0.95383 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 37.16 0.38 -1.39 16 2 C 0.10 1.13 5.71 -4.04 -0.02 1.11 16 3 N -0.62 -7.71 2.44 -179.43 -0.44 -8.15 16 4 C 0.14 1.39 5.81 -4.05 -0.02 1.37 16 5 C 0.06 0.53 7.39 37.16 0.27 0.80 16 6 O -0.57 -5.15 12.48 -35.23 -0.44 -5.59 16 7 C 0.70 11.11 8.24 -86.92 -0.72 10.39 16 8 O -0.54 -10.06 14.17 5.29 0.07 -9.98 16 9 N -0.66 -10.62 5.26 -15.67 -0.08 -10.70 16 10 C 0.35 6.06 7.45 -154.43 -1.15 4.91 16 11 N -0.44 -7.72 7.87 -12.22 -0.10 -7.81 16 12 C 0.08 1.07 11.17 -17.55 -0.20 0.88 16 13 C -0.16 -2.11 10.10 -39.44 -0.40 -2.51 16 14 C -0.15 -2.19 9.14 -39.17 -0.36 -2.55 16 15 C 0.06 1.10 6.72 -38.92 -0.26 0.84 16 16 O -0.32 -5.99 9.39 -19.69 -0.18 -6.17 16 17 C 0.07 1.32 4.70 37.16 0.17 1.50 16 18 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 19 C -0.53 -14.15 9.11 -34.44 -0.31 -14.47 16 20 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 23 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.95 7.11 -51.93 -0.37 0.58 16 31 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 32 H 0.08 0.70 8.07 -51.92 -0.42 0.28 16 33 H 0.10 1.04 7.42 -51.93 -0.39 0.66 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 36 H 0.38 1.93 9.12 45.56 0.42 2.34 16 37 H 0.42 6.29 5.78 -40.82 -0.24 6.05 16 38 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.14 1.99 6.44 -52.49 -0.34 1.65 16 41 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 42 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -33.56 377.19 -8.43 -41.99 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.81 Total: 6.85 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.86 Total: 3.00 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.12 Total: -51.45 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.55 Total: -21.75 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.56 -8.43 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188714269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.105 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds