Wall clock time and date at job start Tue Mar 31 2020 14:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99824 * 2 1 4 4 H 1.09000 * 109.47187 * 329.99818 * 3 2 1 5 5 C 1.52993 * 109.47290 * 90.00378 * 3 2 1 6 6 C 1.53006 * 109.46973 * 210.00016 * 3 2 1 7 7 N 1.46509 * 109.46995 * 64.99984 * 6 3 2 8 8 C 1.34769 * 120.00005 * 179.97438 * 7 6 3 9 9 O 1.21589 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.39582 * 120.00497 * 180.02562 * 10 8 7 12 12 N 1.32273 * 119.72229 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68673 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47325 * 59.99531 * 24 22 20 26 26 H 1.48496 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47183 * 299.99726 * 24 22 20 28 28 H 1.09004 * 109.47461 * 59.99834 * 1 2 3 29 29 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47241 * 299.99890 * 1 2 3 31 31 H 1.09007 * 109.47034 * 299.99657 * 5 3 2 32 32 H 1.09000 * 109.47463 * 59.99609 * 5 3 2 33 33 H 1.09000 * 109.47532 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47126 * 304.99988 * 6 3 2 35 35 H 1.09002 * 109.47092 * 184.99512 * 6 3 2 36 36 H 0.96999 * 119.99506 * 0.02562 * 7 6 3 37 37 H 0.97000 * 119.99815 * 0.02562 * 10 8 7 38 38 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.32603 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.78184 * 180.27511 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3589 1.2633 -0.7213 7 7 3.1476 0.9330 -2.1329 8 6 4.2011 0.8405 -2.9683 9 8 5.3270 1.0307 -2.5504 10 7 4.0068 0.5362 -4.2668 11 6 5.0979 0.4399 -5.1320 12 7 6.3203 0.6488 -4.6717 13 6 7.3792 0.5682 -5.4552 14 6 7.2497 0.2600 -6.7947 15 6 5.9864 0.0271 -7.3203 16 6 4.8904 0.1237 -6.4744 17 8 3.6334 -0.0917 -6.9462 18 6 3.5070 -0.4103 -8.3336 19 6 2.0303 -0.6172 -8.6768 20 6 1.8970 -0.9525 -10.1399 21 1 2.7773 -1.0116 -10.7628 22 6 0.6511 -1.1827 -10.6837 23 7 -0.4210 -1.1102 -9.9253 24 14 0.4857 -1.5990 -12.4971 25 1 1.2405 -2.8438 -12.7901 26 1 -0.9474 -1.7997 -12.8303 27 1 1.0327 -0.4850 -13.3127 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.2568 1.8015 1.9563 32 1 2.8829 1.0775 1.9563 33 1 2.6606 2.7673 1.4425 34 1 3.9931 0.5052 -0.2618 35 1 3.8426 2.2370 -0.6445 36 1 2.2494 0.7817 -2.4664 37 1 3.1087 0.3842 -4.6002 38 1 8.3613 0.7460 -5.0425 39 1 8.1234 0.1963 -7.4266 40 1 5.8589 -0.2201 -8.3639 41 1 4.0611 -1.3239 -8.5486 42 1 3.9083 0.4075 -8.9322 43 1 1.6294 -1.4350 -8.0782 44 1 1.4759 0.2963 -8.4617 45 1 -1.2975 -1.2725 -10.3077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188777595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:22 Heat of formation + Delta-G solvation = -94.811442 kcal Electronic energy + Delta-G solvation = -26666.214171 eV Core-core repulsion = 22683.875245 eV Total energy + Delta-G solvation = -3982.338926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07225 -40.76998 -39.38922 -39.02621 -36.11560 -35.67199 -35.42693 -32.97466 -32.72458 -32.06465 -30.29938 -27.79063 -27.16430 -26.95112 -24.88167 -23.92330 -22.79636 -22.48113 -21.75349 -19.85877 -19.32201 -18.84657 -18.02413 -17.87764 -17.26653 -17.16940 -16.89488 -16.49921 -16.47373 -16.08797 -15.79869 -15.51684 -15.16826 -15.04416 -14.87740 -14.34201 -14.14054 -14.06226 -13.68501 -13.56190 -13.33374 -13.27694 -13.04194 -12.79730 -12.71825 -12.44266 -12.32233 -11.87761 -11.72494 -11.68645 -11.66458 -11.58219 -11.41552 -10.64962 -10.59511 -10.42510 -10.22896 -10.12019 -8.81075 -8.25085 -6.37581 0.16317 0.32127 1.40539 1.42931 1.45575 1.53321 2.08312 2.13023 2.45172 2.76093 2.93104 2.93734 3.10132 3.59007 3.75079 3.88284 3.98504 4.04663 4.15326 4.18442 4.30910 4.35327 4.48480 4.49702 4.56506 4.57311 4.70107 4.76013 4.79962 4.91743 4.95935 4.98054 5.15427 5.24765 5.28528 5.32500 5.41764 5.51284 5.52722 5.71042 5.81383 6.08852 6.23355 6.36177 6.69806 6.77131 7.15847 7.32390 7.51122 8.87397 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.002825 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.642187 B = 9907.965101 C =12554.584188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.076 3.924 4 H 0.084 0.916 5 C -0.168 4.168 6 C 0.143 3.857 7 N -0.729 5.729 8 C 0.694 3.306 9 O -0.575 6.575 10 N -0.661 5.661 11 C 0.328 3.672 12 N -0.473 5.473 13 C 0.074 3.926 14 C -0.147 4.147 15 C -0.146 4.146 16 C 0.039 3.961 17 O -0.330 6.330 18 C 0.083 3.917 19 C 0.030 3.970 20 C -0.545 4.545 21 H 0.071 0.929 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.285 1.285 27 H -0.264 1.264 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.408 0.592 37 H 0.424 0.576 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 5.586 16.718 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.019 3.981 4 H 0.102 0.898 5 C -0.226 4.226 6 C 0.019 3.981 7 N -0.386 5.386 8 C 0.393 3.607 9 O -0.450 6.450 10 N -0.311 5.311 11 C 0.095 3.905 12 N -0.188 5.188 13 C -0.082 4.082 14 C -0.168 4.168 15 C -0.173 4.173 16 C -0.012 4.012 17 O -0.243 6.243 18 C 0.009 3.991 19 C -0.007 4.007 20 C -0.583 4.583 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.794 3.206 25 H -0.190 1.190 26 H -0.210 1.210 27 H -0.189 1.189 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.243 0.757 37 H 0.262 0.738 38 H 0.203 0.797 39 H 0.194 0.806 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.022 5.801 18.183 20.703 hybrid contribution -1.617 -0.502 -2.075 2.679 sum 6.404 5.299 16.108 18.126 Atomic orbital electron populations 1.22969 0.79611 1.03614 1.01042 1.87963 1.21241 1.28076 1.95274 1.22429 0.93362 0.85280 0.97072 0.89830 1.22174 1.03385 1.02458 0.94550 1.21454 0.97060 1.01498 0.78116 1.44980 1.08286 1.75705 1.09585 1.16103 0.85295 0.78634 0.80637 1.90979 1.22639 1.55572 1.75763 1.42504 1.09206 1.71812 1.07581 1.17687 0.87622 1.00370 0.84799 1.67682 0.97142 1.15716 1.38299 1.23064 0.97108 0.97298 0.90754 1.22271 0.97936 0.99978 0.96596 1.21891 0.92070 1.02246 1.01091 1.19675 0.86492 1.02497 0.92490 1.86026 1.24154 1.84775 1.29354 1.22955 0.99640 0.99551 0.76943 1.18937 0.89811 0.96060 0.95877 1.21379 0.93623 1.48711 0.94577 0.91078 1.25958 0.95397 0.94854 1.03257 1.70093 0.98871 1.49849 1.38050 0.85420 0.77154 0.79294 0.78724 1.18979 1.21034 1.18918 0.93121 0.89262 0.92633 0.90868 0.92019 0.89857 0.92298 0.89658 0.75666 0.73784 0.79717 0.80638 0.82466 0.91827 0.91746 0.98082 0.98013 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.49 10.29 -148.98 -1.53 -9.02 16 3 C 0.08 1.13 2.75 30.59 0.08 1.22 16 4 H 0.08 0.99 7.79 -2.39 -0.02 0.97 16 5 C -0.17 -1.89 9.53 71.98 0.69 -1.20 16 6 C 0.14 2.87 5.34 86.38 0.46 3.34 16 7 N -0.73 -17.21 5.51 -478.51 -2.64 -19.85 16 8 C 0.69 22.18 8.53 179.06 1.53 23.71 16 9 O -0.57 -22.33 14.59 -4.00 -0.06 -22.39 16 10 N -0.66 -21.13 5.40 -321.77 -1.74 -22.87 16 11 C 0.33 11.44 7.45 132.98 0.99 12.43 16 12 N -0.47 -16.36 7.87 -192.59 -1.52 -17.87 16 13 C 0.07 1.94 11.17 84.63 0.95 2.89 16 14 C -0.15 -3.30 10.10 22.36 0.23 -3.07 16 15 C -0.15 -4.06 9.14 22.53 0.21 -3.85 16 16 C 0.04 1.33 6.72 22.70 0.15 1.49 16 17 O -0.33 -12.47 9.39 -93.36 -0.88 -13.34 16 18 C 0.08 3.29 4.70 71.98 0.34 3.63 16 19 C 0.03 1.54 5.34 29.85 0.16 1.70 16 20 C -0.55 -29.13 9.11 25.60 0.23 -28.90 16 21 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 22 C 0.00 0.23 5.46 84.65 0.46 0.69 16 23 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 24 Si 0.97 41.94 29.54 68.60 2.03 43.96 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 28 H 0.05 0.58 8.09 -2.38 -0.02 0.56 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 0.54 7.87 -2.39 -0.02 0.52 16 31 H 0.07 0.68 7.87 -2.38 -0.02 0.66 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.41 7.93 8.49 -92.71 -0.79 7.15 16 37 H 0.42 12.22 8.06 -92.71 -0.75 11.47 16 38 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 40 H 0.16 3.88 6.44 -2.91 -0.02 3.87 16 41 H 0.06 2.34 7.69 -2.39 -0.02 2.32 16 42 H 0.06 2.36 7.71 -2.39 -0.02 2.34 16 43 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -74.11 382.51 1.13 -72.98 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.52 Total: 26.90 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.70 Total: 15.58 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -5.60 Total: -114.68 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -2.47 Total: -44.75 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.11 1.13 -72.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188777595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.832 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds