Wall clock time and date at job start Tue Mar 31 2020 14:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47332 * 2 1 4 4 C 1.53008 * 109.46735 * 240.00109 * 2 1 3 5 5 C 1.53000 * 109.46957 * 175.00287 * 4 2 1 6 6 O 1.42899 * 109.46794 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.47097 * 120.00319 * 2 1 3 8 8 C 1.34775 * 119.99986 * 274.99622 * 7 2 1 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 2 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.08995 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46576 * 299.99879 * 1 2 3 30 30 H 1.08999 * 109.47246 * 59.99822 * 1 2 3 31 31 H 1.09000 * 109.46858 * 295.00012 * 4 2 1 32 32 H 1.08999 * 109.46930 * 54.99761 * 4 2 1 33 33 H 1.08995 * 109.46668 * 299.99688 * 5 4 2 34 34 H 1.08998 * 109.47206 * 59.99990 * 5 4 2 35 35 H 0.96698 * 113.99581 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00232 * 94.99664 * 7 2 1 37 37 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 38 38 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 39 39 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 40 40 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 3.5648 -0.6134 -1.3138 6 8 4.0409 -1.2865 -2.4809 7 7 2.0183 -0.6907 1.1961 8 6 2.1471 -0.0184 2.3571 9 8 1.8585 1.1615 2.4116 10 7 2.5969 -0.6536 3.4573 11 6 2.7307 0.0429 4.6597 12 7 2.4097 1.3248 4.7143 13 6 2.5260 2.0217 5.8289 14 6 2.9854 1.4327 6.9901 15 6 3.3285 0.0878 6.9811 16 6 3.1951 -0.6206 5.7952 17 8 3.5197 -1.9399 5.7392 18 6 3.9949 -2.5427 6.9446 19 6 4.3059 -4.0188 6.6883 20 6 4.8077 -4.6544 7.9592 21 1 4.8964 -4.0644 8.8595 22 6 5.1546 -5.9887 7.9725 23 7 5.5930 -6.5432 9.0814 24 14 5.0019 -7.0089 6.4151 25 1 6.2743 -6.9413 5.6524 26 1 4.7145 -8.4207 6.7743 27 1 3.8957 -6.4754 5.5803 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8531 0.4368 -1.3575 34 1 3.9994 -1.0730 -0.4261 35 1 5.0017 -1.2583 -2.5867 36 1 2.2490 -1.6318 1.1525 37 1 2.8275 -1.5948 3.4138 38 1 2.2576 3.0678 5.8330 39 1 3.0770 2.0127 7.8964 40 1 3.6899 -0.3962 7.8763 41 1 3.2305 -2.4617 7.7174 42 1 4.9001 -2.0323 7.2737 43 1 3.4007 -4.5290 6.3593 44 1 5.0702 -4.1002 5.9154 45 1 5.8367 -7.4821 9.0908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188786043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:26 Heat of formation + Delta-G solvation = -78.471763 kcal Electronic energy + Delta-G solvation = -26912.113685 eV Core-core repulsion = 22930.483301 eV Total energy + Delta-G solvation = -3981.630385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00391 -39.79458 -38.00882 -37.60772 -36.04416 -34.71610 -33.46209 -32.16802 -31.53317 -30.76211 -29.38599 -28.88915 -25.65984 -24.17706 -23.36456 -22.81648 -21.58812 -20.86566 -20.53508 -18.87522 -18.21982 -17.79090 -17.40749 -16.63654 -16.27365 -15.97779 -15.92560 -15.38979 -15.13148 -14.70241 -14.65172 -14.28762 -14.25541 -13.99685 -13.70416 -13.47299 -13.10227 -12.78788 -12.58543 -12.31645 -12.23072 -12.16539 -12.06433 -11.45094 -11.27887 -11.25787 -11.00528 -10.75824 -10.48015 -10.35132 -10.31053 -10.17241 -9.95525 -9.46589 -9.34537 -9.18534 -9.11549 -8.71608 -7.70377 -6.22244 -4.24048 1.22479 1.41259 2.36433 3.15238 3.20293 3.28391 3.31043 3.42611 3.71661 3.84644 4.00849 4.29888 4.57098 4.60237 4.62914 4.81568 4.92156 5.02827 5.08117 5.10712 5.11541 5.18925 5.21666 5.42114 5.43698 5.50052 5.60052 5.73201 5.77219 5.77540 5.98232 6.00804 6.13767 6.28024 6.33188 6.36598 6.50326 6.73857 6.94096 7.09689 7.23451 7.48466 7.59465 7.69789 8.19786 8.28871 8.56392 8.78078 9.37364 10.90225 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.003220 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.709024 B = 8692.687626 C =11116.951075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 H 0.092 0.908 4 C -0.127 4.127 5 C 0.074 3.926 6 O -0.577 6.577 7 N -0.744 5.744 8 C 0.697 3.303 9 O -0.534 6.534 10 N -0.662 5.662 11 C 0.347 3.653 12 N -0.442 5.442 13 C 0.078 3.922 14 C -0.162 4.162 15 C -0.144 4.144 16 C 0.063 3.937 17 O -0.321 6.321 18 C 0.074 3.926 19 C -0.007 4.007 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.264 1.264 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.381 0.619 36 H 0.396 0.604 37 H 0.419 0.581 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 13.989 -16.908 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.060 3.940 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.004 4.004 6 O -0.383 6.383 7 N -0.401 5.401 8 C 0.396 3.604 9 O -0.405 6.405 10 N -0.312 5.312 11 C 0.113 3.887 12 N -0.156 5.156 13 C -0.079 4.079 14 C -0.184 4.184 15 C -0.171 4.171 16 C 0.011 3.989 17 O -0.234 6.234 18 C 0.000 4.000 19 C -0.045 4.045 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.708 3.292 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.188 1.188 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.228 0.772 36 H 0.230 0.770 37 H 0.256 0.744 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.484 15.054 -17.853 24.523 hybrid contribution 1.222 -1.884 0.529 2.307 sum -6.262 13.171 -17.323 22.644 Atomic orbital electron populations 1.22186 0.94837 1.02346 1.02853 1.20732 0.94180 0.97209 0.81910 0.89028 1.21837 0.94513 1.02316 0.97861 1.22190 0.94811 0.95924 0.87455 1.86441 1.27471 1.78809 1.45552 1.45324 1.72142 1.13798 1.08882 1.15954 0.78974 0.85406 0.80022 1.91028 1.53165 1.13085 1.83252 1.42508 1.67643 1.14084 1.06968 1.17477 0.98686 0.88853 0.83647 1.67630 1.15898 1.03891 1.28211 1.22432 0.98296 0.99804 0.87318 1.21904 1.01594 0.94851 1.00019 1.21614 1.02712 0.95229 0.97532 1.19495 1.00000 0.85824 0.93550 1.86043 1.79475 1.18561 1.39299 1.23134 0.97635 0.95900 0.83370 1.19578 0.97471 0.88693 0.98715 1.20813 1.44814 0.95611 0.95477 0.90714 1.24936 0.94123 0.97615 0.96295 1.69886 1.43723 1.12975 1.26779 0.86753 0.79209 0.79541 0.83702 1.20053 1.21126 1.18827 0.92365 0.91542 0.91547 0.90475 0.89459 0.93474 0.93341 0.77169 0.76990 0.74423 0.82601 0.84713 0.83614 0.92319 0.92349 0.95404 0.95858 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.16 1.41 2.58 -67.93 -0.17 1.24 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.13 -0.90 5.12 -26.73 -0.14 -1.04 16 5 C 0.07 0.56 6.93 37.16 0.26 0.82 16 6 O -0.58 -4.71 13.66 -35.23 -0.48 -5.19 16 7 N -0.74 -7.17 4.53 -58.67 -0.27 -7.44 16 8 C 0.70 9.57 8.50 -86.92 -0.74 8.83 16 9 O -0.53 -9.21 14.26 5.29 0.08 -9.13 16 10 N -0.66 -9.16 5.40 -15.67 -0.08 -9.25 16 11 C 0.35 5.54 7.45 -154.43 -1.15 4.39 16 12 N -0.44 -7.21 7.87 -12.22 -0.10 -7.30 16 13 C 0.08 1.03 11.17 -17.56 -0.20 0.84 16 14 C -0.16 -1.96 10.10 -39.44 -0.40 -2.36 16 15 C -0.14 -2.03 9.14 -39.17 -0.36 -2.38 16 16 C 0.06 1.00 6.72 -38.92 -0.26 0.74 16 17 O -0.32 -5.50 9.39 -19.69 -0.18 -5.68 16 18 C 0.07 1.37 4.70 37.16 0.17 1.55 16 19 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 20 C -0.53 -14.20 9.66 -34.44 -0.33 -14.53 16 21 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 22 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 23 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 24 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.37 7.75 -51.93 -0.40 -0.04 16 35 H 0.38 1.59 9.12 45.56 0.42 2.00 16 36 H 0.40 2.97 8.62 -40.82 -0.35 2.62 16 37 H 0.42 4.99 8.06 -40.82 -0.33 4.66 16 38 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.91 6.44 -52.49 -0.34 1.57 16 41 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 42 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 43 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 44 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -34.38 377.71 -8.36 -42.74 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.93 Total: 6.56 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.18 Total: -1.28 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.33 Total: -49.63 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.59 Total: -20.00 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.38 -8.36 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188786043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.729 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds