Wall clock time and date at job start Tue Mar 31 2020 14:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47325 * 2 1 4 4 N 1.46892 * 109.47538 * 239.99326 * 2 1 3 5 5 C 1.46899 * 111.00258 * 85.00380 * 4 2 1 6 6 C 1.52998 * 109.47476 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47106 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47175 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99724 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00196 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00232 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99980 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46883 * 90.00379 * 12 10 8 14 14 H 1.48498 * 109.46863 * 209.99982 * 12 10 8 15 15 H 1.48502 * 109.46965 * 330.00289 * 12 10 8 16 16 C 1.50703 * 109.46790 * 119.99383 * 2 1 3 17 17 N 1.30105 * 124.95136 * 74.97798 * 16 2 1 18 18 C 1.35790 * 109.64670 * 179.73712 * 17 16 2 19 19 C 1.39735 * 133.59667 * 179.47614 * 18 17 16 20 20 C 1.36603 * 119.88474 * 180.48799 * 19 18 17 21 21 C 1.38782 * 120.66847 * 0.26358 * 20 19 18 22 22 C 1.37848 * 120.45006 * 0.04028 * 21 20 19 23 23 C 1.38834 * 119.69217 * 359.97438 * 22 21 20 24 24 N 1.36041 * 124.95031 * 255.00416 * 16 2 1 25 25 C 1.46496 * 126.34833 * 359.93561 * 24 16 2 26 26 F 1.39903 * 109.47668 * 300.02358 * 25 24 16 27 27 F 1.39910 * 109.47057 * 60.02455 * 25 24 16 28 28 H 1.08997 * 109.47325 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47503 * 300.00977 * 1 2 3 30 30 H 1.09000 * 109.46860 * 60.00755 * 1 2 3 31 31 H 1.00904 * 111.00508 * 208.95484 * 4 2 1 32 32 H 1.09007 * 109.47016 * 300.00118 * 5 4 2 33 33 H 1.08999 * 109.47362 * 59.99367 * 5 4 2 34 34 H 1.09000 * 109.47045 * 299.99548 * 6 5 4 35 35 H 1.09003 * 109.47389 * 59.99844 * 6 5 4 36 36 H 1.08993 * 109.47213 * 299.99675 * 7 6 5 37 37 H 1.09003 * 109.47028 * 59.99741 * 7 6 5 38 38 H 0.96999 * 120.00060 * 179.97438 * 11 10 8 39 39 H 1.08002 * 120.06112 * 0.77402 * 19 18 17 40 40 H 1.08002 * 119.67092 * 180.27749 * 20 19 18 41 41 H 1.07995 * 119.77284 * 180.02562 * 21 20 19 42 42 H 1.08002 * 120.15797 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47202 * 180.02562 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0827 0.2223 -2.3468 6 6 2.5953 -0.5335 -3.5743 7 6 2.6602 0.4193 -4.7696 8 6 3.1658 -0.3250 -5.9785 9 1 3.4162 -1.3729 -5.9018 10 6 3.3097 0.3318 -7.1821 11 7 3.7504 -0.3179 -8.2373 12 14 2.8773 2.1442 -7.3147 13 1 4.0775 2.9631 -7.0079 14 1 2.4135 2.4429 -8.6934 15 1 1.7972 2.4674 -6.3481 16 6 2.0322 -0.7103 1.2306 17 7 2.0201 -1.9997 1.4041 18 6 2.5495 -2.3021 2.6174 19 6 2.7659 -3.5005 3.3028 20 6 3.3251 -3.4805 4.5489 21 6 3.6775 -2.2790 5.1475 22 6 3.4676 -1.0843 4.4927 23 6 2.9000 -1.0849 3.2257 24 7 2.5640 -0.0967 2.3221 25 6 2.7472 1.3453 2.5044 26 9 3.5862 1.8396 1.4999 27 9 1.5055 1.9859 2.4321 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 2.9174 -1.1206 -1.0285 32 1 1.0872 0.6161 -2.5526 33 1 2.7589 1.0460 -2.1182 34 1 3.5906 -0.9275 -3.3688 35 1 1.9186 -1.3569 -3.8028 36 1 1.6648 0.8129 -4.9749 37 1 3.3367 1.2430 -4.5413 38 1 3.8513 0.1441 -9.0842 39 1 2.4957 -4.4412 2.8461 40 1 3.4949 -4.4091 5.0736 41 1 4.1191 -2.2801 6.1330 42 1 3.7433 -0.1520 4.9631 43 1 3.1972 1.5340 3.4791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264169408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:04 Heat of formation + Delta-G solvation = -47.364955 kcal Electronic energy + Delta-G solvation = -26954.306110 eV Core-core repulsion = 22862.937103 eV Total energy + Delta-G solvation = -4091.369008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.46417 -48.54508 -43.34041 -38.98345 -37.85873 -35.77949 -35.03881 -33.95810 -31.57413 -31.28823 -29.83821 -28.14100 -27.28323 -25.45456 -23.87362 -23.33552 -22.49601 -21.97581 -21.17541 -19.46394 -19.09875 -18.97393 -18.81263 -17.86452 -17.30853 -16.59437 -16.44429 -16.27246 -16.13135 -15.71048 -15.45098 -15.33754 -15.00593 -14.91211 -14.87922 -14.62323 -14.54905 -13.95630 -13.63914 -13.59790 -13.47902 -13.02927 -12.96196 -12.81978 -12.72862 -12.58419 -12.34525 -12.27783 -11.94943 -11.80845 -11.56504 -11.49216 -11.29628 -11.08506 -10.76455 -9.56131 -9.53437 -9.26409 -8.29241 -6.33924 -0.20163 0.39038 0.80852 1.35807 1.38497 1.50848 1.51109 2.34213 2.36782 2.79914 2.80905 2.85052 3.03476 3.05814 3.23501 3.46663 3.80771 3.91646 4.00623 4.09710 4.17783 4.30376 4.34370 4.35937 4.42187 4.58342 4.64534 4.73628 4.78142 4.86547 4.95393 5.01974 5.07069 5.19314 5.30469 5.44820 5.48613 5.51928 5.58413 5.62561 5.65758 5.85304 5.93632 6.17928 6.29954 6.68001 6.74276 7.30483 8.87970 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.002673 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.306814 B =10473.733420 C =11206.673776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.164 3.836 3 H 0.065 0.935 4 N -0.673 5.673 5 C 0.070 3.930 6 C -0.089 4.089 7 C -0.008 4.008 8 C -0.535 4.535 9 H 0.027 0.973 10 C 0.000 4.000 11 N -0.954 5.954 12 Si 0.956 3.044 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.243 1.243 16 C 0.280 3.720 17 N -0.488 5.488 18 C 0.010 3.990 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.086 4.086 22 C -0.115 4.115 23 C 0.045 3.955 24 N -0.543 5.543 25 C 0.475 3.525 26 F -0.191 7.191 27 F -0.185 7.185 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.341 0.659 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.266 0.734 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.172 0.828 42 H 0.160 0.840 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 3.797 36.255 36.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.083 0.917 4 N -0.306 5.306 5 C -0.059 4.059 6 C -0.127 4.127 7 C -0.046 4.046 8 C -0.573 4.573 9 H 0.045 0.955 10 C -0.196 4.196 11 N -0.595 5.595 12 Si 0.778 3.222 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.166 1.166 16 C 0.014 3.986 17 N -0.206 5.206 18 C -0.106 4.106 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.105 4.105 22 C -0.135 4.135 23 C -0.060 4.060 24 N -0.246 5.246 25 C 0.340 3.660 26 F -0.173 7.173 27 F -0.167 7.167 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.148 0.852 40 H 0.178 0.822 41 H 0.190 0.810 42 H 0.178 0.822 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.922 3.105 35.363 35.619 hybrid contribution 0.980 1.373 -0.548 1.774 sum -1.942 4.478 34.814 35.155 Atomic orbital electron populations 1.21731 0.91170 1.03016 1.02750 1.20101 0.97670 0.93905 0.83030 0.91681 1.60535 1.34044 1.32904 1.03103 1.22040 1.01218 0.93275 0.89363 1.21241 0.99650 0.98392 0.93456 1.19476 0.96549 0.95558 0.93039 1.21514 1.43575 0.97004 0.95181 0.95460 1.26101 0.94422 1.04020 0.95088 1.70085 1.48467 1.39138 1.01778 0.85579 0.79974 0.78714 0.77895 1.19098 1.20934 1.16602 1.23786 0.95821 0.88579 0.90448 1.70430 1.20794 1.11893 1.17480 1.19657 1.03918 0.94867 0.92140 1.20353 0.99369 0.95182 0.95205 1.21132 0.98293 1.00384 0.93903 1.21454 0.97709 0.90411 1.00949 1.20464 1.01408 1.01528 0.90135 1.19137 1.04977 0.87316 0.94587 1.46626 1.54576 1.07041 1.16369 1.21966 0.76509 0.73975 0.93544 1.93131 1.71174 1.87040 1.65939 1.93128 1.45148 1.81127 1.97247 0.92152 0.91344 0.90468 0.84031 0.89999 0.94675 0.93910 0.93106 0.95718 0.96199 0.92486 0.85180 0.82152 0.81037 0.82223 0.77540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.40 71.98 0.68 -2.41 16 2 C 0.16 4.33 2.87 44.17 0.13 4.46 16 3 H 0.07 1.63 6.29 -2.39 -0.02 1.61 16 4 N -0.67 -20.87 6.28 -495.47 -3.11 -23.98 16 5 C 0.07 2.27 5.48 86.30 0.47 2.74 16 6 C -0.09 -3.70 5.41 30.59 0.17 -3.53 16 7 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 8 C -0.53 -32.20 9.66 25.60 0.25 -31.95 16 9 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 10 C 0.00 0.00 5.47 84.65 0.46 0.46 16 11 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 12 Si 0.96 45.16 27.47 68.60 1.88 47.04 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 15 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 16 C 0.28 7.47 6.28 137.92 0.87 8.34 16 17 N -0.49 -14.82 11.24 -179.96 -2.02 -16.85 16 18 C 0.01 0.26 7.23 39.45 0.29 0.54 16 19 C -0.08 -1.59 10.05 22.25 0.22 -1.37 16 20 C -0.12 -1.38 9.96 22.02 0.22 -1.16 16 21 C -0.09 -0.74 10.03 22.31 0.22 -0.52 16 22 C -0.11 -1.28 9.89 22.32 0.22 -1.05 16 23 C 0.04 0.88 6.87 38.86 0.27 1.15 16 24 N -0.54 -11.19 3.06 -523.68 -1.60 -12.80 16 25 C 0.47 6.54 5.58 127.77 0.71 7.26 16 26 F -0.19 -3.51 16.59 44.97 0.75 -2.76 16 27 F -0.19 -2.96 17.30 44.97 0.78 -2.19 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.76 7.45 -2.39 -0.02 1.74 16 31 H 0.34 11.08 8.35 -89.69 -0.75 10.33 16 32 H 0.08 2.53 7.44 -2.38 -0.02 2.51 16 33 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 37 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 38 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 39 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.16 0.52 7.76 -2.91 -0.02 0.50 16 43 H 0.21 0.59 7.62 -2.39 -0.02 0.57 16 Total: -1.00 -78.52 365.66 2.49 -76.03 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.23 Total: 14.27 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.29 Total: -17.33 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -6.44 Total: -115.06 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.52 Total: -4.95 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -78.52 2.49 -76.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264169408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.663 kcal (2) G-P(sol) polarization free energy of solvation -78.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds