Wall clock time and date at job start Tue Mar 31 2020 14:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34897 * 117.00124 * 180.02562 * 3 2 1 5 5 O 1.21629 * 119.99901 * 359.97438 * 4 3 2 6 6 C 1.46469 * 120.00064 * 179.97438 * 4 3 2 7 7 C 1.38022 * 126.18143 * 180.02562 * 6 4 3 8 8 C 1.40136 * 107.10027 * 179.97438 * 7 6 4 9 9 N 1.40782 * 126.11443 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00082 * 359.97438 * 9 8 7 11 11 O 1.21605 * 119.99624 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00301 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99819 * 359.97438 * 12 10 9 14 14 C 1.53000 * 109.46550 * 90.00398 * 13 12 10 15 15 C 1.46500 * 119.99954 * 179.97438 * 12 10 9 16 16 C 1.50701 * 109.47168 * 89.99527 * 15 12 10 17 17 H 1.08003 * 119.99634 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99795 * 179.97438 * 16 15 12 19 19 N 1.31503 * 120.00186 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99750 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47316 * 89.99962 * 20 18 16 22 22 H 1.48498 * 109.47243 * 210.00039 * 20 18 16 23 23 H 1.48508 * 109.47102 * 329.99703 * 20 18 16 24 24 C 1.35931 * 107.77453 * 0.02562 * 8 7 6 25 25 N 1.35833 * 108.79036 * 359.77033 * 24 8 7 26 26 C 1.46497 * 125.65142 * 180.23027 * 25 24 8 27 27 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 31 31 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 32 32 H 1.08000 * 126.44578 * 0.02562 * 7 6 4 33 33 H 0.96999 * 120.00671 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47010 * 210.00147 * 13 12 10 35 35 H 1.09000 * 109.46878 * 330.00686 * 13 12 10 36 36 H 1.08992 * 109.47452 * 60.00281 * 14 13 12 37 37 H 1.09007 * 109.46692 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.47259 * 299.99596 * 14 13 12 39 39 H 1.09000 * 109.47077 * 209.99898 * 15 12 10 40 40 H 1.09006 * 109.47218 * 329.99805 * 15 12 10 41 41 H 0.97009 * 120.00041 * 179.97438 * 19 18 16 42 42 H 1.07999 * 125.60198 * 179.97438 * 24 8 7 43 43 H 1.08994 * 109.47122 * 270.17089 * 26 25 24 44 44 H 1.09005 * 109.47440 * 30.16820 * 26 25 24 45 45 H 1.08998 * 109.47414 * 150.16745 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3514 1.5458 -0.0005 5 8 4.0923 0.5812 -0.0005 6 6 3.9112 2.8993 -0.0011 7 6 5.2520 3.2264 -0.0022 8 6 5.3349 4.6253 -0.0031 9 7 6.5192 5.3864 -0.0038 10 6 7.7172 4.7689 -0.0032 11 8 7.7749 3.5542 -0.0015 12 7 8.8510 5.4975 -0.0033 13 6 8.7814 6.9608 -0.0047 14 6 8.7566 7.4714 1.4373 15 6 10.1531 4.8261 -0.0021 16 6 10.6002 4.5944 -1.4225 17 1 9.9769 4.9156 -2.2439 18 6 11.8054 3.9734 -1.6732 19 7 12.5645 3.5828 -0.6730 20 14 12.3599 3.6869 -3.4338 21 1 13.1481 4.8556 -3.9010 22 1 13.2023 2.4655 -3.4950 23 1 11.1702 3.5118 -4.3053 24 6 4.0672 5.1161 -0.0019 25 7 3.1950 4.0748 -0.0055 26 6 1.7341 4.1847 -0.0104 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 6.0813 2.5345 -0.0032 33 1 6.4732 6.3553 -0.0047 34 1 9.6533 7.3656 -0.5186 35 1 7.8753 7.2809 -0.5192 36 1 9.6625 7.1514 1.9518 37 1 8.7043 8.5603 1.4363 38 1 7.8846 7.0667 1.9512 39 1 10.8837 5.4511 0.5115 40 1 10.0680 3.8690 0.5127 41 1 13.4123 3.1455 -0.8494 42 1 3.7979 6.1620 -0.0018 43 1 1.3686 4.2144 1.0159 44 1 1.4402 5.0983 -0.5273 45 1 1.3067 3.3234 -0.5237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268388832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:42 Heat of formation + Delta-G solvation = -78.786551 kcal Electronic energy + Delta-G solvation = -27420.941097 eV Core-core repulsion = 23439.297062 eV Total energy + Delta-G solvation = -3981.644035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.63599 -41.27525 -40.68054 -37.73873 -37.08946 -35.98330 -34.79252 -32.90352 -32.71044 -31.59251 -30.36856 -28.92046 -27.00934 -25.58471 -24.81795 -24.18155 -23.37160 -21.85208 -21.45263 -20.25854 -19.53277 -18.67207 -18.35238 -17.99287 -17.75354 -17.19418 -16.50650 -16.35005 -16.32957 -16.00730 -15.42136 -15.15000 -15.02313 -14.77130 -14.61380 -14.44967 -14.19411 -13.68758 -13.67228 -13.38510 -13.35200 -13.21533 -13.12280 -13.05341 -12.95003 -12.68118 -12.48406 -12.45319 -12.18029 -11.94370 -11.85888 -11.74470 -11.59411 -11.55382 -10.84004 -10.61614 -9.60894 -9.45371 -8.59485 -8.18367 -6.33937 0.08385 1.35645 1.40002 1.43383 1.47018 1.49992 1.58803 1.96849 2.06701 2.38769 2.56860 3.08675 3.15203 3.65270 3.97619 3.98784 4.06568 4.11365 4.14278 4.32640 4.37341 4.42376 4.54526 4.55892 4.67921 4.75323 4.82728 4.92803 4.94440 4.99663 5.01091 5.06421 5.10784 5.23447 5.28314 5.33520 5.41486 5.61451 5.62481 5.87930 5.94506 6.10259 6.22484 6.26738 6.62425 6.75397 7.20410 7.33393 7.77323 8.87071 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.003015 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.097602 B = 9285.269198 C =10623.659145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.347 6.347 4 C 0.542 3.458 5 O -0.542 6.542 6 C -0.060 4.060 7 C -0.133 4.133 8 C 0.050 3.950 9 N -0.648 5.648 10 C 0.692 3.308 11 O -0.625 6.625 12 N -0.615 5.615 13 C 0.100 3.900 14 C -0.161 4.161 15 C 0.279 3.721 16 C -0.540 4.540 17 H 0.051 0.949 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.967 3.033 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.276 1.276 24 C 0.038 3.962 25 N -0.403 5.403 26 C 0.064 3.936 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.422 0.578 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.028 0.972 40 H -0.006 1.006 41 H 0.267 0.733 42 H 0.233 0.767 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.152 8.604 2.344 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.264 6.264 4 C 0.389 3.611 5 O -0.433 6.433 6 C -0.171 4.171 7 C -0.163 4.163 8 C -0.049 4.049 9 N -0.299 5.299 10 C 0.394 3.606 11 O -0.506 6.506 12 N -0.350 5.350 13 C -0.022 4.022 14 C -0.219 4.219 15 C 0.158 3.842 16 C -0.578 4.578 17 H 0.069 0.931 18 C -0.192 4.192 19 N -0.569 5.569 20 Si 0.791 3.209 21 H -0.184 1.184 22 H -0.208 1.208 23 H -0.201 1.201 24 C -0.102 4.102 25 N -0.078 5.078 26 C -0.075 4.075 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.012 0.988 41 H 0.075 0.925 42 H 0.250 0.750 43 H 0.113 0.887 44 H 0.143 0.857 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.108 7.369 2.392 30.121 hybrid contribution 1.380 -0.690 -0.647 1.673 sum -27.727 6.680 1.745 28.574 Atomic orbital electron populations 1.21813 0.89218 1.04564 1.04132 1.23379 0.97620 0.78887 1.02426 1.86575 1.21656 1.33908 1.84291 1.19828 0.81151 0.87751 0.72367 1.90913 1.61532 1.42349 1.48484 1.19023 0.90483 0.84481 1.23122 1.21517 0.94081 0.96040 1.04652 1.16909 0.86382 0.90212 1.11437 1.41803 1.01212 1.09529 1.77374 1.16112 0.81206 0.84933 0.78379 1.90822 1.86254 1.14438 1.59062 1.47436 1.04762 1.07261 1.75511 1.21722 1.03812 0.78167 0.98505 1.22175 1.01626 1.02709 0.95438 1.18607 0.78371 0.91502 0.95751 1.21730 1.03961 1.38974 0.93180 0.93061 1.25845 0.96599 0.94888 1.01892 1.70051 1.12881 1.41038 1.32933 0.85428 0.78002 0.78207 0.79218 1.18413 1.20769 1.20149 1.21971 0.85117 0.94872 1.08216 1.43994 1.08296 1.03153 1.52320 1.22641 0.72731 1.06570 1.05550 0.90708 0.88330 0.90655 0.91690 0.91772 0.85859 0.73832 0.90385 0.88566 0.94317 0.88132 0.92499 0.95391 0.98804 0.92458 0.75042 0.88737 0.85739 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 10.29 71.98 0.74 -0.52 16 2 C 0.05 0.90 6.20 71.98 0.45 1.35 16 3 O -0.35 -7.80 7.64 -58.11 -0.44 -8.24 16 4 C 0.54 17.46 7.92 69.97 0.55 18.01 16 5 O -0.54 -22.16 16.68 19.41 0.32 -21.84 16 6 C -0.06 -1.90 6.88 40.32 0.28 -1.62 16 7 C -0.13 -5.35 9.44 22.68 0.21 -5.13 16 8 C 0.05 1.59 6.91 37.63 0.26 1.85 16 9 N -0.65 -21.05 5.34 -317.68 -1.70 -22.75 16 10 C 0.69 31.76 8.25 179.05 1.48 33.23 16 11 O -0.63 -36.13 13.10 -4.05 -0.05 -36.19 16 12 N -0.61 -27.31 2.46 -844.16 -2.07 -29.38 16 13 C 0.10 3.03 5.89 86.38 0.51 3.53 16 14 C -0.16 -3.92 10.24 71.98 0.74 -3.18 16 15 C 0.28 15.75 5.16 85.63 0.44 16.19 16 16 C -0.54 -32.40 9.39 25.60 0.24 -32.16 16 17 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 18 C 0.01 0.39 5.46 84.66 0.46 0.85 16 19 N -0.93 -58.20 13.28 21.45 0.28 -57.92 16 20 Si 0.97 46.84 29.54 68.60 2.03 48.86 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 C 0.04 0.72 11.42 83.54 0.95 1.68 16 25 N -0.40 -8.20 3.17 -533.71 -1.69 -9.89 16 26 C 0.06 0.59 10.56 127.77 1.35 1.94 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 6.38 5.97 -2.91 -0.02 6.36 16 33 H 0.42 9.44 6.56 -92.71 -0.61 8.83 16 34 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 35 H 0.10 2.13 6.36 -2.39 -0.02 2.12 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 40 H -0.01 -0.41 7.42 -2.38 -0.02 -0.42 16 41 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 42 H 0.23 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 45 H 0.09 1.00 6.14 -2.39 -0.01 0.99 16 Total: -1.00 -92.99 380.70 5.74 -87.25 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.40 Total: 14.09 kcal Atomic # 6 Polarization: 27.35 SS G_CDS: 8.66 Total: 36.01 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -5.18 Total: -119.94 kcal Atomic # 8 Polarization: -66.10 SS G_CDS: -0.17 Total: -66.27 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -92.99 5.74 -87.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268388832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.463 kcal (2) G-P(sol) polarization free energy of solvation -92.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds