Wall clock time and date at job start Tue Mar 31 2020 13:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34897 * 117.00124 * 180.02562 * 3 2 1 5 5 O 1.21629 * 119.99901 * 359.97438 * 4 3 2 6 6 C 1.46469 * 120.00064 * 179.97438 * 4 3 2 7 7 C 1.38022 * 126.18143 * 180.02562 * 6 4 3 8 8 C 1.40137 * 107.10017 * 179.97438 * 7 6 4 9 9 N 1.40782 * 126.11401 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00092 * 359.96868 * 9 8 7 11 11 O 1.21605 * 119.99654 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00309 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99959 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46775 * 324.99838 * 13 12 10 15 15 C 1.50702 * 109.46932 * 204.99959 * 13 12 10 16 16 H 1.08003 * 119.99980 * 359.97438 * 15 13 12 17 17 C 1.37871 * 119.99718 * 179.97438 * 15 13 12 18 18 N 1.31505 * 120.00420 * 359.97438 * 17 15 13 19 19 Si 1.86812 * 119.99641 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46883 * 60.00200 * 19 17 15 21 21 H 1.48496 * 109.46780 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46998 * 300.00018 * 19 17 15 23 23 C 1.52994 * 109.47303 * 84.99988 * 13 12 10 24 24 C 1.53004 * 109.47148 * 295.00214 * 23 13 12 25 25 C 1.35931 * 107.77469 * 0.02562 * 8 7 6 26 26 N 1.35833 * 108.78998 * 359.75520 * 25 8 7 27 27 C 1.46496 * 125.65171 * 180.28739 * 26 25 8 28 28 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 33 33 H 1.07993 * 126.44981 * 0.02562 * 7 6 4 34 34 H 0.97000 * 120.00628 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99824 * 359.97438 * 12 10 9 36 36 H 0.97000 * 120.00250 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.47129 * 54.99866 * 23 13 12 38 38 H 1.08994 * 109.47324 * 175.00283 * 23 13 12 39 39 H 1.08997 * 109.47241 * 180.02562 * 24 23 13 40 40 H 1.09001 * 109.46821 * 299.99840 * 24 23 13 41 41 H 1.08999 * 109.47586 * 59.99550 * 24 23 13 42 42 H 1.08000 * 125.60209 * 179.97438 * 25 8 7 43 43 H 1.09004 * 109.46996 * 270.13620 * 27 26 25 44 44 H 1.09004 * 109.47160 * 30.12723 * 27 26 25 45 45 H 1.09004 * 109.47543 * 150.13418 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3514 1.5458 -0.0005 5 8 4.0923 0.5812 -0.0005 6 6 3.9112 2.8993 -0.0011 7 6 5.2520 3.2264 -0.0022 8 6 5.3349 4.6254 -0.0031 9 7 6.5192 5.3864 -0.0048 10 6 7.7172 4.7688 -0.0052 11 8 7.7749 3.5542 -0.0045 12 7 8.8511 5.4974 -0.0063 13 6 10.1532 4.8260 -0.0073 14 1 10.0907 3.9115 0.5824 15 6 11.1903 5.7405 0.5921 16 1 10.9078 6.7237 0.9387 17 6 12.4997 5.3221 0.6980 18 7 12.8435 4.1248 0.2765 19 14 13.7851 6.4554 1.4417 20 1 13.4017 6.7908 2.8365 21 1 15.1050 5.7749 1.4406 22 1 13.8705 7.7015 0.6384 23 6 10.5476 4.4803 -1.4445 24 6 9.5632 3.4551 -2.0109 25 6 4.0672 5.1161 -0.0019 26 7 3.1950 4.0748 -0.0059 27 6 1.7341 4.1847 -0.0121 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 6.0813 2.5346 -0.0032 34 1 6.4732 6.3553 -0.0056 35 1 8.8049 6.4663 -0.0072 36 1 13.7649 3.8305 0.3507 37 1 10.5236 5.3829 -2.0550 38 1 11.5539 4.0616 -1.4543 39 1 9.8444 3.2084 -3.0347 40 1 9.5872 2.5524 -1.4004 41 1 8.5568 3.8737 -2.0011 42 1 3.7979 6.1620 -0.0018 43 1 1.3676 4.2142 1.0141 44 1 1.4407 5.0985 -0.5289 45 1 1.3071 3.3234 -0.5259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274662201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:21 Heat of formation + Delta-G solvation = -63.760374 kcal Electronic energy + Delta-G solvation = -27388.399205 eV Core-core repulsion = 23407.406754 eV Total energy + Delta-G solvation = -3980.992451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51230 -40.03121 -39.14917 -36.64391 -35.52154 -34.16866 -32.57522 -32.03421 -31.78240 -30.57564 -29.11979 -26.98949 -25.99251 -24.45702 -23.03953 -22.57416 -21.33451 -20.32247 -19.82544 -19.38299 -18.21870 -17.72111 -16.98532 -16.77803 -16.03936 -15.47413 -15.40562 -15.34976 -14.80632 -14.62329 -14.15747 -14.02613 -13.81268 -13.51486 -13.20549 -12.89418 -12.72855 -12.60819 -12.54190 -12.24735 -12.15045 -11.99199 -11.78820 -11.48665 -11.19184 -10.93783 -10.79306 -10.75746 -10.69883 -10.29003 -10.26309 -10.08841 -9.52308 -9.16591 -8.97158 -8.45382 -8.41408 -7.86637 -7.36849 -6.07374 -4.16606 1.22281 2.43635 2.63100 2.63847 3.22839 3.28511 3.33337 3.34352 3.46233 4.13573 4.36382 4.54841 4.62389 4.64665 4.70134 4.89317 4.96658 5.01376 5.11367 5.24179 5.25873 5.35034 5.43666 5.49959 5.59843 5.85516 6.07308 6.26123 6.49602 6.56981 6.58974 6.72364 6.80748 7.09191 7.12661 7.22180 7.34782 7.46399 7.48201 7.58306 7.69857 7.73944 7.95075 8.08741 8.25590 8.80997 8.94938 9.37626 9.53558 10.97921 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025048 B = 0.002505 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.568212 B =11175.930243 C =11760.615869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.539 3.461 5 O -0.494 6.494 6 C -0.046 4.046 7 C -0.087 4.087 8 C 0.094 3.906 9 N -0.674 5.674 10 C 0.695 3.305 11 O -0.575 6.575 12 N -0.721 5.721 13 C 0.287 3.713 14 H 0.050 0.950 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.881 5.881 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.018 4.018 26 N -0.422 5.422 27 C 0.074 3.926 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.180 0.820 34 H 0.401 0.599 35 H 0.384 0.616 36 H 0.265 0.735 37 H 0.029 0.971 38 H 0.098 0.902 39 H 0.020 0.980 40 H 0.050 0.950 41 H 0.039 0.961 42 H 0.171 0.829 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.533 1.027 -1.630 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.384 3.616 5 O -0.381 6.381 6 C -0.156 4.156 7 C -0.116 4.116 8 C -0.008 4.008 9 N -0.322 5.322 10 C 0.395 3.605 11 O -0.452 6.452 12 N -0.372 5.372 13 C 0.185 3.815 14 H 0.068 0.932 15 C -0.572 4.572 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.167 4.167 24 C -0.193 4.193 25 C -0.155 4.155 26 N -0.100 5.100 27 C -0.067 4.067 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.197 0.803 34 H 0.234 0.766 35 H 0.216 0.784 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.116 0.884 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.189 0.811 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.370 -0.569 -1.643 25.429 hybrid contribution 0.651 1.552 0.375 1.724 sum -24.718 0.983 -1.268 24.771 Atomic orbital electron populations 1.21808 0.92658 1.03048 1.03311 1.23022 0.95108 0.80166 1.02930 1.86573 1.24204 1.32407 1.85169 1.19734 0.80240 0.88198 0.73388 1.90937 1.60160 1.40898 1.46108 1.19311 0.91050 0.83062 1.22172 1.21872 0.93723 0.94776 1.01225 1.16637 0.84947 0.91139 1.08052 1.42198 1.02846 1.08644 1.78510 1.16041 0.79957 0.85973 0.78510 1.90825 1.85519 1.11640 1.57210 1.45777 1.05726 1.08926 1.76792 1.18694 0.75851 0.93558 0.93371 0.93170 1.21188 0.93071 1.01517 1.41455 0.92196 1.24873 0.98314 0.95259 0.95228 1.69885 1.18603 1.17648 1.45714 0.86520 0.80446 0.80525 0.79643 1.20237 1.21175 1.20237 1.21951 1.01316 0.96474 0.96951 1.21819 0.99197 1.00412 0.97883 1.21229 0.87529 0.92883 1.13843 1.43592 1.06298 1.04660 1.55416 1.22179 0.76333 1.04549 1.03610 0.91577 0.90193 0.91541 0.91062 0.91076 0.80281 0.76556 0.78373 0.92514 0.95186 0.88366 0.96104 0.93073 0.94159 0.81136 0.90782 0.89834 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.43 16 2 C 0.06 0.54 6.20 37.16 0.23 0.77 16 3 O -0.37 -4.06 7.64 -41.03 -0.31 -4.37 16 4 C 0.54 7.99 7.92 34.05 0.27 8.26 16 5 O -0.49 -8.89 16.68 -19.36 -0.32 -9.22 16 6 C -0.05 -0.69 6.88 -82.02 -0.56 -1.26 16 7 C -0.09 -1.54 9.44 -38.95 -0.37 -1.91 16 8 C 0.09 1.43 6.91 -83.86 -0.58 0.85 16 9 N -0.67 -10.36 5.48 -14.38 -0.08 -10.44 16 10 C 0.69 14.03 7.10 -86.91 -0.62 13.41 16 11 O -0.57 -13.67 10.65 5.27 0.06 -13.61 16 12 N -0.72 -14.83 5.03 -59.81 -0.30 -15.13 16 13 C 0.29 7.24 2.24 -69.08 -0.15 7.09 16 14 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 15 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.07 1.79 5.29 -17.83 -0.09 1.69 16 18 N -0.88 -24.83 11.30 55.43 0.63 -24.21 16 19 Si 0.90 20.65 29.54 -169.99 -5.02 15.62 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 24 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 25 C -0.02 -0.20 11.42 -16.61 -0.19 -0.39 16 26 N -0.42 -4.79 3.17 -120.04 -0.38 -5.17 16 27 C 0.07 0.51 10.56 59.84 0.63 1.14 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.18 3.80 5.97 -52.49 -0.31 3.49 16 34 H 0.40 4.57 8.84 -40.82 -0.36 4.21 16 35 H 0.38 6.73 8.55 -40.82 -0.35 6.38 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 41 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 42 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 0.67 6.15 -51.93 -0.32 0.35 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -33.79 371.63 -7.83 -41.62 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.51 Total: 10.53 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.18 Total: 8.77 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.13 Total: -54.95 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.58 Total: -27.20 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.79 -7.83 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.139 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds