Wall clock time and date at job start Tue Mar 31 2020 13:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34897 * 117.00124 * 180.02562 * 3 2 1 5 5 O 1.21629 * 119.99901 * 359.97438 * 4 3 2 6 6 C 1.46469 * 120.00064 * 179.97438 * 4 3 2 7 7 C 1.38022 * 126.18143 * 180.02562 * 6 4 3 8 8 C 1.40137 * 107.10017 * 179.97438 * 7 6 4 9 9 N 1.40782 * 126.11401 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00092 * 359.96868 * 9 8 7 11 11 O 1.21605 * 119.99654 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00309 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99959 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46775 * 324.99838 * 13 12 10 15 15 C 1.50702 * 109.46932 * 204.99959 * 13 12 10 16 16 H 1.08003 * 119.99980 * 359.97438 * 15 13 12 17 17 C 1.37871 * 119.99718 * 179.97438 * 15 13 12 18 18 N 1.31505 * 120.00420 * 359.97438 * 17 15 13 19 19 Si 1.86812 * 119.99641 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46883 * 60.00200 * 19 17 15 21 21 H 1.48496 * 109.46780 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46998 * 300.00018 * 19 17 15 23 23 C 1.52994 * 109.47303 * 84.99988 * 13 12 10 24 24 C 1.53004 * 109.47148 * 295.00214 * 23 13 12 25 25 C 1.35931 * 107.77469 * 0.02562 * 8 7 6 26 26 N 1.35833 * 108.78998 * 359.75520 * 25 8 7 27 27 C 1.46496 * 125.65171 * 180.28739 * 26 25 8 28 28 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 33 33 H 1.07993 * 126.44981 * 0.02562 * 7 6 4 34 34 H 0.97000 * 120.00628 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99824 * 359.97438 * 12 10 9 36 36 H 0.97000 * 120.00250 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.47129 * 54.99866 * 23 13 12 38 38 H 1.08994 * 109.47324 * 175.00283 * 23 13 12 39 39 H 1.08997 * 109.47241 * 180.02562 * 24 23 13 40 40 H 1.09001 * 109.46821 * 299.99840 * 24 23 13 41 41 H 1.08999 * 109.47586 * 59.99550 * 24 23 13 42 42 H 1.08000 * 125.60209 * 179.97438 * 25 8 7 43 43 H 1.09004 * 109.46996 * 270.13620 * 27 26 25 44 44 H 1.09004 * 109.47160 * 30.12723 * 27 26 25 45 45 H 1.09004 * 109.47543 * 150.13418 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3514 1.5458 -0.0005 5 8 4.0923 0.5812 -0.0005 6 6 3.9112 2.8993 -0.0011 7 6 5.2520 3.2264 -0.0022 8 6 5.3349 4.6254 -0.0031 9 7 6.5192 5.3864 -0.0048 10 6 7.7172 4.7688 -0.0052 11 8 7.7749 3.5542 -0.0045 12 7 8.8511 5.4974 -0.0063 13 6 10.1532 4.8260 -0.0073 14 1 10.0907 3.9115 0.5824 15 6 11.1903 5.7405 0.5921 16 1 10.9078 6.7237 0.9387 17 6 12.4997 5.3221 0.6980 18 7 12.8435 4.1248 0.2765 19 14 13.7851 6.4554 1.4417 20 1 13.4017 6.7908 2.8365 21 1 15.1050 5.7749 1.4406 22 1 13.8705 7.7015 0.6384 23 6 10.5476 4.4803 -1.4445 24 6 9.5632 3.4551 -2.0109 25 6 4.0672 5.1161 -0.0019 26 7 3.1950 4.0748 -0.0059 27 6 1.7341 4.1847 -0.0121 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 6.0813 2.5346 -0.0032 34 1 6.4732 6.3553 -0.0056 35 1 8.8049 6.4663 -0.0072 36 1 13.7649 3.8305 0.3507 37 1 10.5236 5.3829 -2.0550 38 1 11.5539 4.0616 -1.4543 39 1 9.8444 3.2084 -3.0347 40 1 9.5872 2.5524 -1.4004 41 1 8.5568 3.8737 -2.0011 42 1 3.7979 6.1620 -0.0018 43 1 1.3676 4.2142 1.0141 44 1 1.4407 5.0985 -0.5289 45 1 1.3071 3.3234 -0.5259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274662201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:20 Heat of formation + Delta-G solvation = -87.081472 kcal Electronic energy + Delta-G solvation = -27389.410484 eV Core-core repulsion = 23407.406754 eV Total energy + Delta-G solvation = -3982.003730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.60429 -41.21257 -40.61406 -37.72373 -37.24380 -35.66545 -34.33397 -33.22524 -32.70178 -32.21943 -30.23128 -28.84423 -26.97171 -25.49782 -24.88491 -23.45430 -22.78357 -21.46753 -21.35079 -21.04384 -19.44264 -19.21554 -18.07201 -17.76985 -17.73547 -17.15149 -16.58680 -16.31317 -16.28447 -16.07468 -15.51747 -15.14319 -15.01235 -14.74620 -14.51507 -14.27341 -14.08577 -13.65635 -13.54385 -13.33935 -13.26147 -13.15391 -13.10816 -12.94089 -12.85014 -12.62317 -12.44700 -12.15852 -12.03740 -11.89011 -11.63626 -11.58495 -11.42778 -11.03082 -10.82848 -10.49229 -9.68024 -9.49589 -8.55992 -8.11992 -6.29341 0.10378 1.45452 1.46828 1.49399 1.50525 1.56680 1.63615 1.99671 2.14901 2.46153 2.61890 3.17356 3.55396 3.72704 3.98947 4.00312 4.07596 4.16207 4.33464 4.40195 4.52722 4.54018 4.60778 4.68570 4.77310 4.79416 4.89055 4.93203 4.99755 5.09635 5.11828 5.26097 5.32441 5.34511 5.49132 5.56915 5.63382 5.70733 5.83579 5.94435 5.99370 6.21541 6.27263 6.44417 6.63831 6.79562 7.38002 7.43052 7.87825 8.93396 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025048 B = 0.002505 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.568212 B =11175.930243 C =11760.615869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.348 6.348 4 C 0.541 3.459 5 O -0.541 6.541 6 C -0.062 4.062 7 C -0.129 4.129 8 C 0.054 3.946 9 N -0.652 5.652 10 C 0.690 3.310 11 O -0.617 6.617 12 N -0.716 5.716 13 C 0.297 3.703 14 H -0.005 1.005 15 C -0.545 4.545 16 H 0.074 0.926 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.263 1.263 23 C -0.119 4.119 24 C -0.120 4.120 25 C 0.033 3.967 26 N -0.404 5.404 27 C 0.064 3.936 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.423 0.577 35 H 0.402 0.598 36 H 0.264 0.736 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.021 0.979 41 H 0.041 0.959 42 H 0.230 0.770 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.767 4.537 -1.699 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.389 3.611 5 O -0.432 6.432 6 C -0.173 4.173 7 C -0.159 4.159 8 C -0.046 4.046 9 N -0.301 5.301 10 C 0.391 3.609 11 O -0.497 6.497 12 N -0.369 5.369 13 C 0.193 3.807 14 H 0.013 0.987 15 C -0.584 4.584 16 H 0.092 0.908 17 C -0.187 4.187 18 N -0.555 5.555 19 Si 0.797 3.203 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.187 1.187 23 C -0.159 4.159 24 C -0.177 4.177 25 C -0.106 4.106 26 N -0.079 5.079 27 C -0.075 4.075 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.261 0.739 35 H 0.237 0.763 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.246 0.754 43 H 0.111 0.889 44 H 0.141 0.859 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.723 3.006 -1.715 28.931 hybrid contribution 1.452 0.417 0.405 1.563 sum -27.272 3.422 -1.310 27.517 Atomic orbital electron populations 1.21815 0.89324 1.04557 1.04089 1.23369 0.97558 0.78896 1.02439 1.86578 1.21793 1.33897 1.84299 1.19839 0.81113 0.87798 0.72375 1.90909 1.61479 1.42307 1.48484 1.19069 0.90649 0.84380 1.23212 1.21529 0.94016 0.95908 1.04459 1.16849 0.86259 0.90223 1.11222 1.41721 1.01364 1.09621 1.77439 1.16186 0.81064 0.85428 0.78269 1.90843 1.86357 1.13803 1.58735 1.45344 1.04573 1.09640 1.77365 1.18223 0.77924 0.91791 0.92735 0.98709 1.21544 0.93434 1.02062 1.41334 0.90758 1.25796 1.00623 0.96653 0.95604 1.70058 1.18920 1.19577 1.46913 0.85399 0.77268 0.78713 0.78929 1.19697 1.21441 1.18729 1.21792 1.00025 0.97007 0.97028 1.21635 0.98985 0.98752 0.98333 1.21969 0.85398 0.94801 1.08436 1.43986 1.08233 1.03271 1.52440 1.22622 0.72921 1.06517 1.05430 0.90704 0.88324 0.90760 0.91734 0.91663 0.85304 0.73900 0.76300 0.92672 0.93874 0.91059 0.93961 0.95988 0.93959 0.75404 0.88935 0.85872 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 10.29 71.98 0.74 -0.45 16 2 C 0.05 0.87 6.20 71.98 0.45 1.32 16 3 O -0.35 -7.52 7.64 -58.11 -0.44 -7.97 16 4 C 0.54 16.70 7.92 69.97 0.55 17.25 16 5 O -0.54 -21.17 16.68 19.41 0.32 -20.85 16 6 C -0.06 -1.87 6.88 40.32 0.28 -1.60 16 7 C -0.13 -4.86 9.44 22.68 0.21 -4.65 16 8 C 0.05 1.61 6.91 37.63 0.26 1.87 16 9 N -0.65 -19.47 5.48 -317.68 -1.74 -21.21 16 10 C 0.69 28.78 7.10 179.05 1.27 30.05 16 11 O -0.62 -31.70 10.65 -4.05 -0.04 -31.74 16 12 N -0.72 -29.94 5.03 -461.40 -2.32 -32.26 16 13 C 0.30 15.61 2.24 44.24 0.10 15.71 16 14 H 0.00 -0.32 7.58 -2.39 -0.02 -0.33 16 15 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 16 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 17 C 0.01 0.72 5.29 84.65 0.45 1.17 16 18 N -0.92 -53.51 11.30 21.44 0.24 -53.27 16 19 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 24 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 25 C 0.03 0.61 11.42 83.54 0.95 1.57 16 26 N -0.40 -7.90 3.17 -533.69 -1.69 -9.59 16 27 C 0.06 0.57 10.56 127.77 1.35 1.92 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 6.18 5.97 -2.91 -0.02 6.16 16 34 H 0.42 8.49 8.84 -92.71 -0.82 7.68 16 35 H 0.40 13.69 8.55 -92.71 -0.79 12.90 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 4.05 5.95 -2.39 -0.01 4.04 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16 41 H 0.04 2.00 5.64 -2.39 -0.01 1.99 16 42 H 0.23 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.09 0.96 6.15 -2.38 -0.01 0.95 16 Total: -1.00 -82.38 371.63 3.39 -78.99 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.58 Total: 29.21 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 7.62 Total: 24.25 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -5.51 Total: -116.33 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -0.16 Total: -60.56 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -82.38 3.39 -78.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.089 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds