Wall clock time and date at job start Tue Mar 31 2020 13:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47154 * 2 1 4 4 C 1.34904 * 117.00189 * 180.02562 * 3 2 1 5 5 O 1.21628 * 119.99784 * 0.02562 * 4 3 2 6 6 C 1.46462 * 120.00052 * 179.97438 * 4 3 2 7 7 C 1.38018 * 126.18421 * 179.97438 * 6 4 3 8 8 C 1.40138 * 107.10637 * 180.02562 * 7 6 4 9 9 N 1.40787 * 126.11624 * 179.97438 * 8 7 6 10 10 C 1.34783 * 119.99666 * 0.02562 * 9 8 7 11 11 O 1.21593 * 120.00073 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99632 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99622 * 179.72668 * 12 10 9 14 14 H 1.08996 * 109.47594 * 35.27871 * 13 12 10 15 15 C 1.50703 * 109.47011 * 155.27573 * 13 12 10 16 16 H 1.07996 * 120.00223 * 35.00529 * 15 13 12 17 17 C 1.37876 * 120.00119 * 215.00333 * 15 13 12 18 18 N 1.31512 * 119.99878 * 184.83052 * 17 15 13 19 19 Si 1.86802 * 120.00141 * 4.83006 * 17 15 13 20 20 H 1.48503 * 109.47058 * 84.85971 * 19 17 15 21 21 H 1.48491 * 109.47308 * 204.85981 * 19 17 15 22 22 H 1.48504 * 109.46851 * 324.86312 * 19 17 15 23 23 C 1.52998 * 109.47269 * 275.27408 * 13 12 10 24 24 C 1.52995 * 109.47063 * 65.69659 * 23 13 12 25 25 C 1.35930 * 107.77113 * 0.22494 * 8 7 6 26 26 N 1.35837 * 108.78942 * 359.63416 * 25 8 7 27 27 C 1.46493 * 125.64820 * 180.14434 * 26 25 8 28 28 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47467 * 299.99763 * 1 2 3 30 30 H 1.09007 * 109.47189 * 60.00391 * 1 2 3 31 31 H 1.09005 * 109.46814 * 240.00442 * 2 1 3 32 32 H 1.08998 * 109.47343 * 119.99885 * 2 1 3 33 33 H 1.08006 * 126.44199 * 359.97438 * 7 6 4 34 34 H 0.96992 * 119.99918 * 180.02562 * 9 8 7 35 35 H 0.97002 * 119.99884 * 0.02562 * 12 10 9 36 36 H 0.97005 * 119.99772 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.47390 * 185.69463 * 23 13 12 38 38 H 1.08997 * 109.47362 * 305.69707 * 23 13 12 39 39 H 1.09003 * 109.47804 * 180.02562 * 24 23 13 40 40 H 1.09000 * 109.47269 * 300.00322 * 24 23 13 41 41 H 1.09005 * 109.47155 * 60.00088 * 24 23 13 42 42 H 1.07999 * 125.60107 * 179.77211 * 25 8 7 43 43 H 1.08998 * 109.47292 * 270.26615 * 27 26 25 44 44 H 1.09005 * 109.47465 * 30.26223 * 27 26 25 45 45 H 1.09007 * 109.47381 * 150.26225 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3514 1.5457 -0.0005 5 8 4.0923 0.5811 -0.0015 6 6 3.9112 2.8991 -0.0011 7 6 5.2520 3.2264 -0.0012 8 6 5.3349 4.6253 -0.0013 9 7 6.5194 5.3864 -0.0009 10 6 7.7173 4.7686 -0.0009 11 8 7.7750 3.5540 -0.0017 12 7 8.8512 5.4972 0.0001 13 6 10.1531 4.8258 0.0061 14 1 10.0934 3.9117 -0.5846 15 6 11.1929 5.7407 -0.5882 16 1 11.1315 6.8064 -0.4243 17 6 12.2225 5.2172 -1.3411 18 7 13.1816 6.0028 -1.7798 19 14 12.2551 3.3921 -1.7379 20 1 11.4276 3.1328 -2.9435 21 1 13.6540 2.9668 -1.9969 22 1 11.7094 2.6259 -0.5888 23 6 10.5415 4.4789 1.4447 24 6 9.5649 3.4405 2.0003 25 6 4.0673 5.1160 0.0039 26 7 3.1950 4.0748 -0.0011 27 6 1.7342 4.1847 -0.0010 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 6.0813 2.5344 -0.0005 34 1 6.4732 6.3552 -0.0006 35 1 8.8050 6.4662 0.0011 36 1 13.9057 5.6345 -2.3099 37 1 11.5525 4.0717 1.4601 38 1 10.5029 5.3788 2.0585 39 1 9.8412 3.1936 3.0254 40 1 8.5539 3.8476 1.9849 41 1 9.6035 2.5405 1.3865 42 1 3.7981 6.1619 0.0086 43 1 1.3720 4.2121 1.0267 44 1 1.4386 5.0995 -0.5148 45 1 1.3050 3.3245 -0.5148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274662204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:24 Heat of formation + Delta-G solvation = -64.746326 kcal Electronic energy + Delta-G solvation = -27510.904792 eV Core-core repulsion = 23529.869587 eV Total energy + Delta-G solvation = -3981.035205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56952 -40.09096 -39.27933 -36.69412 -35.67635 -34.25380 -32.55157 -32.10051 -31.99768 -30.93423 -29.19001 -27.46369 -26.10420 -24.50527 -22.85991 -22.59880 -21.49748 -20.37967 -19.89293 -19.57684 -18.29348 -17.87455 -17.04050 -16.82386 -16.34986 -15.71210 -15.53023 -15.37868 -14.98687 -14.45313 -14.19990 -14.17106 -13.85206 -13.58265 -13.29065 -12.92939 -12.88337 -12.71879 -12.61475 -12.38563 -12.21167 -12.13326 -11.84931 -11.82365 -11.77301 -10.88907 -10.80312 -10.75499 -10.67717 -10.62089 -10.34779 -9.87030 -9.78069 -9.30155 -9.12509 -8.66919 -8.47710 -8.03660 -7.45071 -6.20665 -4.24067 1.17004 2.38952 2.57288 2.57962 3.16581 3.28824 3.38778 3.39624 3.48543 4.01792 4.37075 4.49566 4.58664 4.60718 4.66457 4.81700 4.92856 4.95453 4.97838 5.22043 5.22956 5.31092 5.40133 5.44913 5.56393 5.80042 6.00725 6.15262 6.18904 6.21225 6.33553 6.50612 6.66715 6.76486 6.88048 7.01822 7.05816 7.09440 7.27123 7.31082 7.41886 7.62338 7.66121 7.68888 8.30848 8.75176 8.83701 9.26686 9.43065 10.90825 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002817 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.157371 B = 9937.059786 C =10572.146989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.539 3.461 5 O -0.495 6.495 6 C -0.046 4.046 7 C -0.088 4.088 8 C 0.092 3.908 9 N -0.672 5.672 10 C 0.694 3.306 11 O -0.580 6.580 12 N -0.716 5.716 13 C 0.253 3.747 14 H 0.052 0.948 15 C -0.529 4.529 16 H 0.078 0.922 17 C 0.082 3.918 18 N -0.889 5.889 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.257 1.257 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.016 4.016 26 N -0.421 5.421 27 C 0.074 3.926 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.179 0.821 34 H 0.402 0.598 35 H 0.389 0.611 36 H 0.268 0.732 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.027 0.973 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.172 0.828 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.027 -3.075 4.370 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.385 3.615 5 O -0.382 6.382 6 C -0.156 4.156 7 C -0.117 4.117 8 C -0.009 4.009 9 N -0.320 5.320 10 C 0.395 3.605 11 O -0.458 6.458 12 N -0.368 5.368 13 C 0.151 3.849 14 H 0.070 0.930 15 C -0.567 4.567 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.525 5.525 19 Si 0.700 3.300 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.182 1.182 23 C -0.165 4.165 24 C -0.201 4.201 25 C -0.153 4.153 26 N -0.099 5.099 27 C -0.067 4.067 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.197 0.803 34 H 0.237 0.763 35 H 0.222 0.778 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.190 0.810 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.859 -4.512 4.252 27.565 hybrid contribution 0.073 0.086 -0.286 0.307 sum -26.786 -4.425 3.966 27.438 Atomic orbital electron populations 1.21808 0.92623 1.03071 1.03338 1.23026 0.95141 0.80132 1.02917 1.86576 1.24166 1.32438 1.85137 1.19731 0.80258 0.88183 0.73353 1.90933 1.60185 1.40916 1.46177 1.19305 0.91048 0.83085 1.22160 1.21848 0.93721 0.94746 1.01379 1.16636 0.84951 0.91114 1.08227 1.42174 1.02749 1.08767 1.78301 1.16119 0.80066 0.85961 0.78367 1.90810 1.85667 1.11733 1.57583 1.45902 1.04979 1.09231 1.76684 1.19071 0.78651 0.94123 0.93073 0.93029 1.21009 1.07850 0.95190 1.32653 0.90396 1.24932 0.94983 0.98033 0.94339 1.69883 1.11435 1.35822 1.35408 0.86904 0.77189 0.85743 0.80210 1.19843 1.21316 1.18159 1.22084 0.98466 0.97490 0.98422 1.21892 0.99887 0.99981 0.98320 1.21250 0.87504 0.92932 1.13572 1.43607 1.06345 1.04655 1.55276 1.22190 0.76266 1.04620 1.03639 0.90179 0.91527 0.91550 0.91072 0.91072 0.80349 0.76349 0.77785 0.92261 0.92159 0.93147 0.95355 0.93008 0.93026 0.81050 0.90745 0.89768 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.52 6.20 37.16 0.23 0.75 16 3 O -0.36 -3.94 7.64 -41.05 -0.31 -4.25 16 4 C 0.54 7.78 7.92 34.04 0.27 8.05 16 5 O -0.50 -8.69 16.68 -19.36 -0.32 -9.01 16 6 C -0.05 -0.67 6.88 -82.02 -0.56 -1.23 16 7 C -0.09 -1.51 9.44 -38.95 -0.37 -1.87 16 8 C 0.09 1.36 6.91 -83.86 -0.58 0.78 16 9 N -0.67 -9.95 5.48 -14.38 -0.08 -10.02 16 10 C 0.69 13.42 7.13 -86.91 -0.62 12.80 16 11 O -0.58 -13.12 10.64 5.28 0.06 -13.07 16 12 N -0.72 -14.16 5.04 -59.81 -0.30 -14.46 16 13 C 0.25 5.98 1.89 -69.09 -0.13 5.85 16 14 H 0.05 1.35 4.74 -51.93 -0.25 1.10 16 15 C -0.53 -14.10 9.05 -34.44 -0.31 -14.41 16 16 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 17 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 18 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 19 Si 0.87 21.84 26.99 -169.99 -4.59 17.25 16 20 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.36 6.82 56.52 0.39 -5.97 16 23 C -0.13 -2.75 5.59 -26.73 -0.15 -2.90 16 24 C -0.14 -2.96 8.52 37.16 0.32 -2.65 16 25 C -0.02 -0.17 11.42 -16.61 -0.19 -0.36 16 26 N -0.42 -4.63 3.17 -120.04 -0.38 -5.01 16 27 C 0.07 0.49 10.56 59.84 0.63 1.12 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.18 3.64 5.97 -52.48 -0.31 3.33 16 34 H 0.40 4.42 8.84 -40.82 -0.36 4.06 16 35 H 0.39 6.66 8.61 -40.82 -0.35 6.31 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 1.08 5.61 -51.93 -0.29 0.78 16 41 H 0.05 1.14 7.88 -51.93 -0.41 0.73 16 42 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.65 6.14 -51.93 -0.32 0.33 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -34.65 371.49 -7.25 -41.90 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.51 Total: 8.74 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -1.18 Total: 7.73 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.01 Total: -54.89 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.58 Total: -26.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.65 -7.25 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.845 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds