Wall clock time and date at job start Tue Mar 31 2020 13:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47154 * 2 1 4 4 C 1.34904 * 117.00189 * 180.02562 * 3 2 1 5 5 O 1.21628 * 119.99784 * 0.02562 * 4 3 2 6 6 C 1.46462 * 120.00052 * 179.97438 * 4 3 2 7 7 C 1.38018 * 126.18421 * 179.97438 * 6 4 3 8 8 C 1.40138 * 107.10637 * 180.02562 * 7 6 4 9 9 N 1.40787 * 126.11624 * 179.97438 * 8 7 6 10 10 C 1.34783 * 119.99666 * 0.02562 * 9 8 7 11 11 O 1.21593 * 120.00073 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99632 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99622 * 179.72668 * 12 10 9 14 14 H 1.08996 * 109.47594 * 35.27871 * 13 12 10 15 15 C 1.50703 * 109.47011 * 155.27573 * 13 12 10 16 16 H 1.07996 * 120.00223 * 35.00529 * 15 13 12 17 17 C 1.37876 * 120.00119 * 215.00333 * 15 13 12 18 18 N 1.31512 * 119.99878 * 184.83052 * 17 15 13 19 19 Si 1.86802 * 120.00141 * 4.83006 * 17 15 13 20 20 H 1.48503 * 109.47058 * 84.85971 * 19 17 15 21 21 H 1.48491 * 109.47308 * 204.85981 * 19 17 15 22 22 H 1.48504 * 109.46851 * 324.86312 * 19 17 15 23 23 C 1.52998 * 109.47269 * 275.27408 * 13 12 10 24 24 C 1.52995 * 109.47063 * 65.69659 * 23 13 12 25 25 C 1.35930 * 107.77113 * 0.22494 * 8 7 6 26 26 N 1.35837 * 108.78942 * 359.63416 * 25 8 7 27 27 C 1.46493 * 125.64820 * 180.14434 * 26 25 8 28 28 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47467 * 299.99763 * 1 2 3 30 30 H 1.09007 * 109.47189 * 60.00391 * 1 2 3 31 31 H 1.09005 * 109.46814 * 240.00442 * 2 1 3 32 32 H 1.08998 * 109.47343 * 119.99885 * 2 1 3 33 33 H 1.08006 * 126.44199 * 359.97438 * 7 6 4 34 34 H 0.96992 * 119.99918 * 180.02562 * 9 8 7 35 35 H 0.97002 * 119.99884 * 0.02562 * 12 10 9 36 36 H 0.97005 * 119.99772 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.47390 * 185.69463 * 23 13 12 38 38 H 1.08997 * 109.47362 * 305.69707 * 23 13 12 39 39 H 1.09003 * 109.47804 * 180.02562 * 24 23 13 40 40 H 1.09000 * 109.47269 * 300.00322 * 24 23 13 41 41 H 1.09005 * 109.47155 * 60.00088 * 24 23 13 42 42 H 1.07999 * 125.60107 * 179.77211 * 25 8 7 43 43 H 1.08998 * 109.47292 * 270.26615 * 27 26 25 44 44 H 1.09005 * 109.47465 * 30.26223 * 27 26 25 45 45 H 1.09007 * 109.47381 * 150.26225 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3514 1.5457 -0.0005 5 8 4.0923 0.5811 -0.0015 6 6 3.9112 2.8991 -0.0011 7 6 5.2520 3.2264 -0.0012 8 6 5.3349 4.6253 -0.0013 9 7 6.5194 5.3864 -0.0009 10 6 7.7173 4.7686 -0.0009 11 8 7.7750 3.5540 -0.0017 12 7 8.8512 5.4972 0.0001 13 6 10.1531 4.8258 0.0061 14 1 10.0934 3.9117 -0.5846 15 6 11.1929 5.7407 -0.5882 16 1 11.1315 6.8064 -0.4243 17 6 12.2225 5.2172 -1.3411 18 7 13.1816 6.0028 -1.7798 19 14 12.2551 3.3921 -1.7379 20 1 11.4276 3.1328 -2.9435 21 1 13.6540 2.9668 -1.9969 22 1 11.7094 2.6259 -0.5888 23 6 10.5415 4.4789 1.4447 24 6 9.5649 3.4405 2.0003 25 6 4.0673 5.1160 0.0039 26 7 3.1950 4.0748 -0.0011 27 6 1.7342 4.1847 -0.0010 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 6.0813 2.5344 -0.0005 34 1 6.4732 6.3552 -0.0006 35 1 8.8050 6.4662 0.0011 36 1 13.9057 5.6345 -2.3099 37 1 11.5525 4.0717 1.4601 38 1 10.5029 5.3788 2.0585 39 1 9.8412 3.1936 3.0254 40 1 8.5539 3.8476 1.9849 41 1 9.6035 2.5405 1.3865 42 1 3.7981 6.1619 0.0086 43 1 1.3720 4.2121 1.0267 44 1 1.4386 5.0995 -0.5148 45 1 1.3050 3.3245 -0.5148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274662204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:23 Heat of formation + Delta-G solvation = -89.104903 kcal Electronic energy + Delta-G solvation = -27511.961060 eV Core-core repulsion = 23529.869587 eV Total energy + Delta-G solvation = -3982.091472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.61367 -41.23722 -40.65812 -37.72936 -37.30481 -35.67897 -34.40582 -33.48973 -32.70861 -32.31892 -30.26186 -29.29410 -26.99471 -25.46578 -24.65644 -23.47082 -22.83469 -21.48194 -21.32793 -21.13178 -19.61595 -19.27324 -18.20990 -17.98749 -17.74571 -17.30012 -16.61646 -16.32959 -16.22718 -16.06946 -15.62737 -15.11787 -15.01685 -14.77721 -14.75916 -14.33630 -14.17744 -13.74506 -13.67957 -13.66422 -13.34486 -13.32504 -13.12886 -12.95589 -12.91944 -12.54929 -12.45411 -12.36092 -11.90052 -11.86074 -11.72633 -11.59074 -11.44289 -11.17787 -10.86296 -10.81468 -9.74297 -9.51102 -8.57401 -8.37738 -6.42086 0.09969 1.29243 1.34673 1.45130 1.46563 1.49028 1.60429 1.98717 2.12375 2.28451 2.57859 3.00392 3.52387 3.70466 3.98242 3.99431 4.06751 4.15490 4.32705 4.35962 4.39287 4.45328 4.53191 4.56983 4.68388 4.76848 4.83968 4.91215 4.92432 4.99134 5.10454 5.12793 5.25615 5.29845 5.33276 5.33939 5.46684 5.58572 5.65242 5.85798 5.96750 6.10136 6.26006 6.41891 6.63111 6.64231 7.23980 7.35885 7.80706 8.77044 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.002817 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.157371 B = 9937.059786 C =10572.146989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.542 3.458 5 O -0.541 6.541 6 C -0.062 4.062 7 C -0.128 4.128 8 C 0.054 3.946 9 N -0.652 5.652 10 C 0.692 3.308 11 O -0.616 6.616 12 N -0.715 5.715 13 C 0.260 3.740 14 H 0.026 0.974 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.037 3.963 18 N -0.928 5.928 19 Si 0.921 3.079 20 H -0.279 1.279 21 H -0.278 1.278 22 H -0.258 1.258 23 C -0.122 4.122 24 C -0.130 4.130 25 C 0.033 3.967 26 N -0.405 5.405 27 C 0.064 3.936 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.423 0.577 35 H 0.403 0.597 36 H 0.270 0.730 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.028 0.972 42 H 0.228 0.772 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.814 -1.639 5.077 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.389 3.611 5 O -0.431 6.431 6 C -0.174 4.174 7 C -0.157 4.157 8 C -0.045 4.045 9 N -0.301 5.301 10 C 0.392 3.608 11 O -0.497 6.497 12 N -0.368 5.368 13 C 0.156 3.844 14 H 0.044 0.956 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.164 4.164 18 N -0.567 5.567 19 Si 0.746 3.254 20 H -0.204 1.204 21 H -0.203 1.203 22 H -0.182 1.182 23 C -0.161 4.161 24 C -0.188 4.188 25 C -0.107 4.107 26 N -0.080 5.080 27 C -0.075 4.075 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.261 0.739 35 H 0.238 0.762 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.244 0.756 43 H 0.111 0.889 44 H 0.140 0.860 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -30.750 -3.034 4.968 31.296 hybrid contribution 1.025 -0.313 -0.479 1.174 sum -29.725 -3.348 4.489 30.248 Atomic orbital electron populations 1.21815 0.89409 1.04540 1.04072 1.23362 0.97508 0.78893 1.02452 1.86581 1.21872 1.33897 1.84293 1.19838 0.81093 0.87813 0.72364 1.90904 1.61452 1.42279 1.48502 1.19089 0.90723 0.84328 1.23222 1.21539 0.94012 0.95797 1.04372 1.16834 0.86180 0.90264 1.11267 1.41736 1.01410 1.09702 1.77263 1.16176 0.80998 0.85432 0.78180 1.90827 1.86389 1.13532 1.58916 1.45440 1.04138 1.09836 1.77378 1.18758 0.79595 0.92551 0.93526 0.95582 1.21197 1.08162 0.94815 1.31730 0.92087 1.25508 0.95067 1.00956 0.94833 1.69964 1.12401 1.37269 1.37041 0.86149 0.77316 0.82305 0.79613 1.20439 1.20340 1.18182 1.21991 0.98144 0.98422 0.97532 1.21733 0.99340 0.98470 0.99219 1.21970 0.85524 0.94783 1.08415 1.43990 1.08216 1.03338 1.52434 1.22616 0.72992 1.06463 1.05442 0.88347 0.90729 0.90789 0.91709 0.91622 0.84923 0.73885 0.76159 0.92077 0.93159 0.91702 0.92792 0.93318 0.95249 0.75584 0.88860 0.86015 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 10.29 71.98 0.74 -0.37 16 2 C 0.05 0.83 6.20 71.98 0.45 1.28 16 3 O -0.35 -7.20 7.64 -58.19 -0.44 -7.64 16 4 C 0.54 15.96 7.92 69.96 0.55 16.51 16 5 O -0.54 -20.25 16.68 19.42 0.32 -19.93 16 6 C -0.06 -1.80 6.88 40.32 0.28 -1.52 16 7 C -0.13 -4.53 9.44 22.68 0.21 -4.31 16 8 C 0.05 1.52 6.91 37.63 0.26 1.78 16 9 N -0.65 -18.39 5.48 -317.68 -1.74 -20.13 16 10 C 0.69 26.89 7.13 179.05 1.28 28.16 16 11 O -0.62 -29.07 10.64 -4.01 -0.04 -29.11 16 12 N -0.71 -28.16 5.04 -461.41 -2.32 -30.48 16 13 C 0.26 12.41 1.89 44.25 0.08 12.49 16 14 H 0.03 1.40 4.74 -2.39 -0.01 1.39 16 15 C -0.52 -28.10 9.05 25.60 0.23 -27.87 16 16 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 17 C 0.04 2.10 5.47 84.65 0.46 2.56 16 18 N -0.93 -55.53 13.96 21.45 0.30 -55.23 16 19 Si 0.92 46.07 26.99 68.60 1.85 47.92 16 20 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.26 -12.78 6.82 99.48 0.68 -12.10 16 23 C -0.12 -5.31 5.59 30.59 0.17 -5.14 16 24 C -0.13 -5.38 8.52 71.98 0.61 -4.77 16 25 C 0.03 0.57 11.42 83.54 0.95 1.52 16 26 N -0.40 -7.52 3.17 -533.71 -1.69 -9.21 16 27 C 0.06 0.53 10.56 127.77 1.35 1.88 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.13 5.96 5.97 -2.91 -0.02 5.94 16 34 H 0.42 8.09 8.84 -92.71 -0.82 7.27 16 35 H 0.40 13.45 8.61 -92.71 -0.80 12.65 16 36 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 37 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 2.03 5.61 -2.39 -0.01 2.01 16 41 H 0.03 1.31 7.88 -2.38 -0.02 1.29 16 42 H 0.23 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 45 H 0.09 0.91 6.14 -2.38 -0.01 0.89 16 Total: -1.00 -81.15 371.49 3.25 -77.89 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.61 Total: 23.72 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 7.63 Total: 22.21 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -5.46 Total: -115.06 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.16 Total: -56.69 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.85 Total: 47.92 kcal Total: -81.15 3.25 -77.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.213 kcal (2) G-P(sol) polarization free energy of solvation -81.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds