Wall clock time and date at job start Tue Mar 31 2020 14:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47242 * 2 1 4 4 C 1.35718 * 117.00155 * 179.97438 * 3 2 1 5 5 C 1.41860 * 126.78737 * 180.02562 * 4 3 2 6 6 C 1.36673 * 103.80889 * 180.02562 * 5 4 3 7 7 C 1.47543 * 126.87415 * 180.02562 * 6 5 4 8 8 O 1.21586 * 120.00217 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99765 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00132 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47264 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.49845 * 54.99767 * 11 10 9 13 13 C 1.53041 * 109.49364 * 175.06466 * 11 10 9 14 14 C 1.53050 * 109.53308 * 181.31571 * 13 11 10 15 15 C 1.53195 * 109.31270 * 298.63632 * 14 13 11 16 16 N 1.46922 * 108.77624 * 54.63317 * 15 14 13 17 17 C 1.36938 * 120.63148 * 126.39238 * 16 15 14 18 18 H 1.07995 * 120.00009 * 207.67982 * 17 16 15 19 19 C 1.38820 * 119.99830 * 27.67552 * 17 16 15 20 20 N 1.31618 * 119.99880 * 17.37084 * 19 17 16 21 21 Si 1.86790 * 120.00035 * 197.37250 * 19 17 16 22 22 H 1.48501 * 109.47443 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47493 * 119.99970 * 21 19 17 24 24 H 1.48504 * 109.47052 * 240.00034 * 21 19 17 25 25 C 1.46934 * 118.76703 * 306.41139 * 16 15 14 26 26 O 1.34649 * 106.24279 * 0.02562 * 6 5 4 27 27 N 1.20876 * 111.63665 * 359.70565 * 26 6 5 28 28 H 1.09000 * 109.46741 * 300.00000 * 1 2 3 29 29 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47139 * 59.99990 * 1 2 3 31 31 H 1.08994 * 109.46861 * 120.00018 * 2 1 3 32 32 H 1.09000 * 109.46741 * 240.00000 * 2 1 3 33 33 H 1.07994 * 128.09328 * 0.02562 * 5 4 3 34 34 H 0.97005 * 120.00053 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.46965 * 300.00184 * 10 9 7 36 36 H 1.08995 * 109.47118 * 59.99966 * 10 9 7 37 37 H 1.08999 * 109.46074 * 301.33142 * 13 11 10 38 38 H 1.08999 * 109.46266 * 61.31321 * 13 11 10 39 39 H 1.08998 * 109.49450 * 58.58245 * 14 13 11 40 40 H 1.09002 * 109.49466 * 178.68631 * 14 13 11 41 41 H 1.08988 * 109.58600 * 174.42733 * 15 14 13 42 42 H 1.09003 * 109.58329 * 294.70825 * 15 14 13 43 43 H 0.96997 * 120.00131 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.56708 * 293.78565 * 25 16 15 45 45 H 1.09000 * 109.61494 * 173.35765 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7627 0.0012 6 6 5.3626 2.3986 0.0009 7 6 6.5303 3.3004 0.0019 8 8 6.3680 4.5054 0.0025 9 7 7.7770 2.7884 0.0020 10 6 8.9366 3.6838 0.0024 11 6 10.2219 2.8537 0.0019 12 1 10.2077 2.1617 -0.8401 13 6 11.4307 3.7842 -0.1218 14 6 12.7152 2.9527 -0.1555 15 6 12.8431 2.1649 1.1522 16 7 11.6192 1.3768 1.3512 17 6 11.6865 0.0267 1.5697 18 1 10.8629 -0.6089 1.2800 19 6 12.8135 -0.5250 2.1636 20 7 13.6550 0.2451 2.8202 21 14 13.1356 -2.3601 2.0308 22 1 12.0483 -2.9981 1.2461 23 1 14.4355 -2.5866 1.3494 24 1 13.1795 -2.9546 3.3910 25 6 10.3212 2.0643 1.3110 26 8 5.3812 1.0523 -0.0003 27 7 4.2639 0.5910 0.0049 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.6294 3.7593 0.0017 34 1 7.9066 1.8271 0.0019 35 1 8.9103 4.3127 -0.8875 36 1 8.9100 4.3124 0.8925 37 1 11.3497 4.3645 -1.0409 38 1 11.4580 4.4597 0.7331 39 1 12.6778 2.2593 -0.9957 40 1 13.5741 3.6145 -0.2670 41 1 13.7024 1.4969 1.0937 42 1 12.9741 2.8567 1.9842 43 1 14.4423 -0.1404 3.2355 44 1 10.2437 2.7476 2.1566 45 1 9.5168 1.3302 1.3569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295955361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:09 Heat of formation + Delta-G solvation = -15.971165 kcal Electronic energy + Delta-G solvation = -27015.900670 eV Core-core repulsion = 23036.980514 eV Total energy + Delta-G solvation = -3978.920155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.14581 -40.92510 -40.10850 -39.33107 -36.39926 -34.79896 -34.56819 -33.24606 -32.26650 -32.18766 -31.73279 -27.44863 -27.12858 -25.31544 -24.55436 -23.99926 -23.66802 -22.42194 -21.80000 -20.85592 -19.93898 -19.14096 -18.62412 -18.04944 -17.23536 -17.13539 -17.04142 -16.78392 -16.47060 -15.77012 -15.67211 -15.41040 -15.13505 -14.98218 -14.68936 -14.48279 -14.09800 -13.99410 -13.73350 -13.59894 -13.55695 -13.00135 -12.97519 -12.88079 -12.52041 -12.38299 -12.22215 -12.15097 -11.93603 -11.78233 -11.66794 -11.50698 -11.19112 -11.06217 -11.04178 -10.51844 -10.48033 -10.20185 -8.65134 -7.84910 -5.29563 -0.41298 0.92492 1.41978 1.46879 1.47883 1.49524 1.59297 1.81968 2.25381 2.52766 2.93308 3.29915 3.56557 3.61202 3.75123 3.91270 3.91290 4.01572 4.05726 4.07772 4.10998 4.26106 4.45850 4.53974 4.60842 4.65129 4.78387 4.80538 4.84816 4.91033 4.95086 5.02774 5.14472 5.16338 5.16724 5.33687 5.39811 5.48153 5.61206 5.70632 5.83147 5.84103 6.20772 6.41878 6.79915 6.91709 7.17826 7.89919 8.40625 9.21286 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.002716 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.713253 B =10307.683447 C =12130.842134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.287 6.287 4 C 0.202 3.798 5 C -0.150 4.150 6 C -0.059 4.059 7 C 0.610 3.390 8 O -0.538 6.538 9 N -0.699 5.699 10 C 0.135 3.865 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.096 4.096 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.610 5.610 17 C -0.256 4.256 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.296 1.296 25 C 0.148 3.852 26 O 0.116 5.884 27 N -0.402 5.402 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.207 0.793 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.049 0.951 42 H -0.007 1.007 43 H 0.248 0.752 44 H 0.010 0.990 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.013 4.464 -9.025 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.195 6.195 4 C 0.005 3.995 5 C -0.172 4.172 6 C -0.125 4.125 7 C 0.393 3.607 8 O -0.417 6.417 9 N -0.349 5.349 10 C 0.012 3.988 11 C -0.123 4.123 12 H 0.097 0.903 13 C -0.134 4.134 14 C -0.170 4.170 15 C 0.046 3.954 16 N -0.333 5.333 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.219 1.219 24 H -0.223 1.223 25 C 0.022 3.978 26 O 0.050 5.950 27 N -0.127 5.127 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.224 0.776 34 H 0.253 0.747 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.011 0.989 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.278 4.136 -8.935 23.446 hybrid contribution 0.547 -0.996 0.531 1.254 sum -20.731 3.140 -8.404 22.589 Atomic orbital electron populations 1.21826 0.89932 1.04662 1.03851 1.23116 0.97636 0.79333 1.02498 1.86228 1.12207 1.31939 1.89078 1.22020 0.86389 0.90522 1.00528 1.22430 0.89693 0.99857 1.05236 1.23969 0.96599 0.84273 1.07640 1.16419 0.81290 0.85688 0.77281 1.90869 1.85314 1.13790 1.51681 1.45965 1.04820 1.12128 1.72034 1.21510 0.82226 0.91897 1.03216 1.21747 0.93591 0.97581 0.99369 0.90286 1.21337 0.92933 0.96814 1.02342 1.22004 0.98089 0.98557 0.98339 1.20636 0.89672 0.92442 0.92630 1.44320 1.01484 1.04421 1.83065 1.19565 1.03293 0.83892 1.31929 0.91221 1.25769 0.99855 1.01526 0.97739 1.70199 1.15111 1.35865 1.37084 0.85269 0.77741 0.80924 0.76905 1.18861 1.21869 1.22292 1.21091 0.87828 0.94443 0.94409 1.84970 1.22789 1.18670 1.68556 1.74015 0.90699 1.22623 1.25320 0.91201 0.87886 0.91062 0.91668 0.91444 0.77552 0.74689 0.89377 0.91089 0.89752 0.92362 0.92871 0.91299 0.93218 0.98892 0.94279 0.97217 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.74 6.38 71.98 0.46 1.20 16 3 O -0.29 -5.82 10.21 -90.39 -0.92 -6.74 16 4 C 0.20 4.57 8.00 85.78 0.69 5.25 16 5 C -0.15 -3.12 10.97 22.80 0.25 -2.87 16 6 C -0.06 -1.33 7.29 24.36 0.18 -1.15 16 7 C 0.61 14.84 7.82 86.70 0.68 15.52 16 8 O -0.54 -15.65 16.91 -3.99 -0.07 -15.72 16 9 N -0.70 -15.88 5.33 -466.26 -2.48 -18.36 16 10 C 0.13 3.14 5.07 86.38 0.44 3.58 16 11 C -0.10 -2.89 2.37 -10.71 -0.03 -2.92 16 12 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.10 -2.69 5.17 30.62 0.16 -2.53 16 14 C -0.13 -4.54 6.08 30.68 0.19 -4.35 16 15 C 0.17 8.05 5.31 86.36 0.46 8.51 16 16 N -0.61 -29.34 3.00 -699.09 -2.09 -31.43 16 17 C -0.26 -13.69 9.58 84.04 0.81 -12.89 16 18 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 19 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 20 N -0.94 -55.21 11.19 21.65 0.24 -54.97 16 21 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 25 C 0.15 5.58 5.60 86.36 0.48 6.06 16 26 O 0.12 2.77 11.03 65.77 0.73 3.49 16 27 N -0.40 -9.90 11.50 -172.01 -1.98 -11.88 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.21 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.42 8.86 7.52 -92.70 -0.70 8.16 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.68 6.03 -2.39 -0.01 2.66 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.06 2.03 7.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.00 373.83 1.67 -65.34 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.30 Total: 13.50 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.91 Total: 10.27 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -6.31 Total: -116.64 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.26 Total: -18.97 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.00 1.67 -65.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295955361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.366 kcal (2) G-P(sol) polarization free energy of solvation -67.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds