Wall clock time and date at job start Tue Mar 31 2020 14:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46982 * 2 1 4 4 C 1.35735 * 116.99980 * 180.02562 * 3 2 1 5 5 C 1.41848 * 126.78651 * 180.27942 * 4 3 2 6 6 C 1.36666 * 103.81376 * 180.14072 * 5 4 3 7 7 C 1.47534 * 126.87984 * 179.90335 * 6 5 4 8 8 O 1.21580 * 120.00533 * 359.72071 * 7 6 5 9 9 N 1.34780 * 119.99917 * 179.70917 * 7 6 5 10 10 C 1.46508 * 119.99963 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.46826 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.52682 * 305.07902 * 11 10 9 13 13 C 1.53047 * 109.49753 * 185.00162 * 11 10 9 14 14 C 1.53043 * 109.53907 * 178.68240 * 13 11 10 15 15 C 1.53197 * 109.31048 * 61.36745 * 14 13 11 16 16 N 1.46930 * 108.77229 * 305.36329 * 15 14 13 17 17 C 1.36942 * 120.62512 * 233.58453 * 16 15 14 18 18 H 1.08000 * 119.99822 * 151.83921 * 17 16 15 19 19 C 1.38804 * 120.00133 * 331.83769 * 17 16 15 20 20 N 1.31622 * 120.00247 * 343.07682 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 163.07636 * 19 17 16 22 22 H 1.48498 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47269 * 120.00142 * 21 19 17 24 24 H 1.48497 * 109.46750 * 239.99912 * 21 19 17 25 25 C 1.46921 * 118.74249 * 53.86261 * 16 15 14 26 26 O 1.34662 * 106.23943 * 359.65066 * 6 5 4 27 27 N 1.20877 * 111.63267 * 0.23332 * 26 6 5 28 28 H 1.09005 * 109.46702 * 299.99682 * 1 2 3 29 29 H 1.08991 * 109.47509 * 60.00304 * 1 2 3 30 30 H 1.09007 * 109.46648 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47352 * 240.00198 * 2 1 3 32 32 H 1.08997 * 109.47502 * 120.00129 * 2 1 3 33 33 H 1.08010 * 128.09443 * 0.04848 * 5 4 3 34 34 H 0.96994 * 120.00132 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.46773 * 60.00342 * 10 9 7 36 36 H 1.08995 * 109.46727 * 300.00402 * 10 9 7 37 37 H 1.08994 * 109.45861 * 58.66345 * 13 11 10 38 38 H 1.08997 * 109.44594 * 298.69995 * 13 11 10 39 39 H 1.08991 * 109.49664 * 301.41685 * 14 13 11 40 40 H 1.08996 * 109.51804 * 181.33201 * 14 13 11 41 41 H 1.08994 * 109.58410 * 185.57859 * 15 14 13 42 42 H 1.08997 * 109.70673 * 65.21813 * 15 14 13 43 43 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.58770 * 65.92424 * 25 16 15 45 45 H 1.08999 * 109.58848 * 186.34837 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7627 0.0049 6 6 5.3625 2.3988 -0.0016 7 6 6.5301 3.3006 -0.0017 8 8 6.3678 4.5055 -0.0008 9 7 7.7769 2.7887 -0.0027 10 6 8.9365 3.6841 -0.0023 11 6 10.2217 2.8541 -0.0042 12 1 10.2080 2.1594 0.8356 13 6 11.4306 3.7842 0.1220 14 6 12.7151 2.9527 0.1532 15 6 12.8429 2.1686 -1.1567 16 7 11.6190 1.3811 -1.3577 17 6 11.6865 0.0316 -1.5806 18 1 10.8663 -0.6061 -1.2855 19 6 12.8089 -0.5167 -2.1857 20 7 13.6483 0.2577 -2.8401 21 14 13.1283 -2.3537 -2.0713 22 1 12.0441 -2.9966 -1.2863 23 1 13.1635 -2.9360 -3.4369 24 1 14.4316 -2.5885 -1.3994 25 6 10.3217 2.0698 -1.3214 26 8 5.3812 1.0523 -0.0021 27 7 4.2639 0.5911 -0.0014 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.6292 3.7595 0.0110 34 1 7.9065 1.8274 -0.0037 35 1 8.9103 4.3119 0.8883 36 1 8.9096 4.3137 -0.8916 37 1 11.3496 4.3620 1.0426 38 1 11.4575 4.4622 -0.7310 39 1 12.6778 2.2571 0.9914 40 1 13.5742 3.6138 0.2669 41 1 13.7022 1.5005 -1.1001 42 1 12.9726 2.8611 -1.9884 43 1 14.4325 -0.1255 -3.2633 44 1 10.2486 2.7563 -2.1650 45 1 9.5170 1.3365 -1.3736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295955363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:13 Heat of formation + Delta-G solvation = -16.175289 kcal Electronic energy + Delta-G solvation = -27014.095223 eV Core-core repulsion = 23035.166217 eV Total energy + Delta-G solvation = -3978.929007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.14486 -40.92131 -40.10560 -39.31544 -36.39568 -34.79695 -34.56829 -33.24510 -32.26433 -32.18617 -31.72142 -27.44388 -27.12741 -25.31480 -24.55322 -23.99644 -23.65977 -22.42000 -21.80050 -20.86052 -19.93708 -19.14005 -18.62121 -18.04839 -17.23363 -17.13472 -17.03989 -16.78213 -16.47010 -15.76753 -15.67147 -15.40696 -15.13338 -14.98302 -14.68848 -14.48160 -14.09758 -13.98682 -13.72997 -13.59888 -13.55650 -12.99910 -12.97429 -12.87809 -12.51928 -12.38301 -12.22310 -12.15078 -11.93719 -11.78750 -11.66851 -11.50679 -11.18970 -11.06162 -11.03893 -10.52052 -10.48054 -10.20031 -8.64238 -7.84803 -5.30429 -0.41287 0.92528 1.42083 1.46846 1.47901 1.49429 1.59242 1.82034 2.25445 2.52638 2.93340 3.30058 3.56614 3.61634 3.75193 3.91277 3.91332 4.01789 4.05373 4.07819 4.11466 4.26116 4.45994 4.53924 4.60618 4.65043 4.78370 4.80867 4.84849 4.91008 4.95143 5.02843 5.14484 5.16464 5.16866 5.33865 5.39809 5.48407 5.61197 5.70633 5.83220 5.84056 6.20922 6.42189 6.80022 6.91723 7.17923 7.89807 8.40845 9.21154 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.002716 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.861089 B =10306.389709 C =12131.100852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.288 6.288 4 C 0.202 3.798 5 C -0.150 4.150 6 C -0.059 4.059 7 C 0.610 3.390 8 O -0.538 6.538 9 N -0.699 5.699 10 C 0.135 3.865 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.096 4.096 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.610 5.610 17 C -0.257 4.257 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.292 1.292 25 C 0.148 3.852 26 O 0.116 5.884 27 N -0.402 5.402 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.208 0.792 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.049 0.951 42 H -0.007 1.007 43 H 0.248 0.752 44 H 0.010 0.990 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.990 4.424 9.060 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.195 6.195 4 C 0.005 3.995 5 C -0.172 4.172 6 C -0.125 4.125 7 C 0.393 3.607 8 O -0.417 6.417 9 N -0.349 5.349 10 C 0.011 3.989 11 C -0.123 4.123 12 H 0.097 0.903 13 C -0.134 4.134 14 C -0.170 4.170 15 C 0.046 3.954 16 N -0.333 5.333 17 C -0.387 4.387 18 H 0.087 0.913 19 C -0.248 4.248 20 N -0.583 5.583 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.223 1.223 24 H -0.219 1.219 25 C 0.022 3.978 26 O 0.050 5.950 27 N -0.127 5.127 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.225 0.775 34 H 0.253 0.747 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.011 0.989 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.255 4.095 8.978 23.434 hybrid contribution 0.547 -0.996 -0.550 1.262 sum -20.708 3.100 8.427 22.571 Atomic orbital electron populations 1.21825 0.89932 1.04662 1.03851 1.23115 0.97637 0.79333 1.02497 1.86233 1.12203 1.31936 1.89086 1.22020 0.86389 0.90521 1.00534 1.22429 0.89694 0.99861 1.05227 1.23968 0.96601 0.84271 1.07641 1.16417 0.81293 0.85688 0.77283 1.90867 1.85314 1.13794 1.51681 1.45966 1.04818 1.12127 1.72032 1.21509 0.82248 0.91900 1.03203 1.21823 0.93553 0.97590 0.99304 0.90269 1.21335 0.92943 0.96816 1.02332 1.21996 0.98082 0.98567 0.98312 1.20635 0.89650 0.92452 0.92614 1.44331 1.01525 1.04448 1.82987 1.19559 1.03683 0.83943 1.31523 0.91253 1.25788 0.99891 1.01530 0.97635 1.70198 1.15375 1.35754 1.36937 0.85268 0.77736 0.80931 0.76903 1.18853 1.22274 1.21861 1.21179 0.87848 0.94425 0.94333 1.84973 1.22784 1.18672 1.68562 1.74014 0.90700 1.22624 1.25311 0.91061 0.91199 0.87887 0.91669 0.91448 0.77546 0.74694 0.89384 0.91104 0.89761 0.92370 0.92864 0.91303 0.93286 0.98884 0.94274 0.97192 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.74 6.38 71.98 0.46 1.20 16 3 O -0.29 -5.82 10.21 -90.58 -0.92 -6.75 16 4 C 0.20 4.57 8.00 85.78 0.69 5.25 16 5 C -0.15 -3.12 10.97 22.80 0.25 -2.87 16 6 C -0.06 -1.33 7.29 24.36 0.18 -1.15 16 7 C 0.61 14.85 7.82 86.69 0.68 15.53 16 8 O -0.54 -15.66 16.91 -3.97 -0.07 -15.73 16 9 N -0.70 -15.89 5.33 -466.28 -2.48 -18.38 16 10 C 0.13 3.14 5.07 86.38 0.44 3.58 16 11 C -0.10 -2.89 2.39 -10.57 -0.03 -2.91 16 12 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.10 -2.69 5.17 30.62 0.16 -2.53 16 14 C -0.13 -4.52 6.08 30.67 0.19 -4.34 16 15 C 0.17 8.07 5.30 86.36 0.46 8.52 16 16 N -0.61 -29.34 2.99 -698.26 -2.09 -31.43 16 17 C -0.26 -13.71 9.58 84.03 0.81 -12.91 16 18 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 19 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 20 N -0.94 -55.21 11.20 21.65 0.24 -54.97 16 21 Si 0.96 44.46 29.59 68.60 2.03 46.49 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 C 0.15 5.58 5.63 86.51 0.49 6.07 16 26 O 0.12 2.77 11.03 65.64 0.72 3.49 16 27 N -0.40 -9.90 11.50 -172.00 -1.98 -11.88 16 28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.54 8.14 -2.38 -0.02 0.53 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.21 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.42 8.86 7.54 -92.71 -0.70 8.16 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.64 6.06 -2.39 -0.01 2.63 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.06 2.03 7.16 -2.39 -0.02 2.01 16 Total: -1.00 -66.99 373.93 1.67 -65.32 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.30 Total: 13.50 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.91 Total: 10.32 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -6.31 Total: -116.65 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.27 Total: -18.98 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.99 1.67 -65.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295955363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.148 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds