Wall clock time and date at job start Tue Mar 31 2020 13:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47514 * 2 1 4 4 H 1.09008 * 109.46669 * 54.99619 * 3 2 1 5 5 O 1.42899 * 109.47154 * 295.00258 * 3 2 1 6 6 C 1.52998 * 109.47494 * 174.99812 * 3 2 1 7 7 N 1.46496 * 109.46991 * 185.00108 * 6 3 2 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 3 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.09000 * 109.46742 * 299.99908 * 1 2 3 29 29 H 1.09000 * 109.47154 * 59.99768 * 1 2 3 30 30 H 1.09004 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47465 * 240.00077 * 2 1 3 32 32 H 1.09000 * 109.47154 * 120.00232 * 2 1 3 33 33 H 0.96695 * 114.00016 * 299.99807 * 5 3 2 34 34 H 1.08999 * 109.46870 * 65.00165 * 6 3 2 35 35 H 1.08995 * 109.46965 * 305.00402 * 6 3 2 36 36 H 0.97000 * 120.00201 * 0.02562 * 7 6 3 37 37 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 38 38 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 39 39 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6621 2.0814 -1.2210 6 6 3.5649 1.4443 0.1258 7 7 4.0433 2.8237 0.2459 8 6 5.3624 3.0712 0.3685 9 8 6.1555 2.1496 0.3790 10 7 5.8026 4.3403 0.4785 11 6 7.1689 4.5966 0.6060 12 7 8.0271 3.5902 0.6125 13 6 9.3260 3.7877 0.7365 14 6 9.8421 5.0625 0.8591 15 6 8.9791 6.1495 0.8508 16 6 7.6182 5.9122 0.7180 17 8 6.7354 6.9464 0.7053 18 6 7.2765 8.2628 0.8331 19 6 6.1402 9.2869 0.7972 20 6 6.7108 10.6751 0.9327 21 1 7.7771 10.8131 1.0346 22 6 5.8715 11.7690 0.9275 23 7 6.3694 12.9804 1.0463 24 14 4.0271 11.5302 0.7519 25 1 3.4171 11.3804 2.0975 26 1 3.4379 12.7103 0.0699 27 1 3.7602 10.3099 -0.0511 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0142 1.6543 -2.0138 34 1 4.0030 0.9836 -0.7596 35 1 3.8571 0.8800 1.0113 36 1 3.4107 3.5590 0.2371 37 1 5.1700 5.0756 0.4697 38 1 9.9952 2.9400 0.7418 39 1 10.9069 5.2124 0.9596 40 1 9.3579 7.1565 0.9448 41 1 7.9642 8.4546 0.0095 42 1 7.8109 8.3457 1.7795 43 1 5.6061 9.2039 -0.1492 44 1 5.4522 9.0953 1.6207 45 1 5.7789 13.7500 1.0423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296866848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:08 Heat of formation + Delta-G solvation = -81.106488 kcal Electronic energy + Delta-G solvation = -26592.118890 eV Core-core repulsion = 22610.374255 eV Total energy + Delta-G solvation = -3981.744635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96154 -39.72635 -38.40457 -37.81889 -34.92769 -34.38407 -33.44058 -33.23598 -31.66175 -30.93481 -29.56480 -28.35092 -25.63899 -24.36782 -23.13427 -22.71808 -22.00157 -21.00776 -20.46635 -18.76098 -18.23858 -17.69500 -16.83208 -16.62019 -16.50823 -16.02485 -15.89321 -15.34872 -15.29163 -14.87880 -14.58743 -14.25124 -14.11252 -14.01907 -13.87352 -13.60879 -13.08007 -12.78631 -12.57083 -12.54277 -12.40383 -12.18698 -12.05073 -11.44490 -11.27402 -11.24394 -10.98380 -10.74923 -10.55136 -10.41115 -10.28913 -10.15099 -9.93160 -9.44473 -9.33204 -9.15003 -9.11101 -8.69509 -7.68166 -6.20249 -4.21964 1.24217 1.43057 2.36933 3.16814 3.22542 3.30492 3.33747 3.44780 3.75700 4.00696 4.03516 4.21046 4.32081 4.47352 4.55713 4.65088 4.90096 4.93824 4.99666 5.05625 5.13572 5.21646 5.25227 5.35128 5.42518 5.45519 5.50968 5.72778 5.77092 5.79750 5.82421 6.02155 6.15330 6.24891 6.30429 6.38631 6.51712 6.75565 6.96473 7.12160 7.18413 7.50613 7.61554 7.71986 8.21516 8.30852 8.57640 8.79999 9.39417 10.92134 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.002968 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.929854 B = 9430.289039 C =12263.577817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.094 3.906 4 H 0.106 0.894 5 O -0.557 6.557 6 C 0.109 3.891 7 N -0.742 5.742 8 C 0.696 3.304 9 O -0.537 6.537 10 N -0.661 5.661 11 C 0.347 3.653 12 N -0.442 5.442 13 C 0.078 3.922 14 C -0.162 4.162 15 C -0.144 4.144 16 C 0.064 3.936 17 O -0.320 6.320 18 C 0.074 3.926 19 C -0.008 4.008 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.377 0.623 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.420 0.580 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 -24.495 -2.035 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.034 3.966 4 H 0.124 0.876 5 O -0.363 6.363 6 C -0.016 4.016 7 N -0.400 5.400 8 C 0.395 3.605 9 O -0.409 6.409 10 N -0.311 5.311 11 C 0.113 3.887 12 N -0.157 5.157 13 C -0.079 4.079 14 C -0.184 4.184 15 C -0.171 4.171 16 C 0.012 3.988 17 O -0.233 6.233 18 C 0.000 4.000 19 C -0.045 4.045 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.708 3.292 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.188 1.188 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.225 0.775 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.257 0.743 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.757 -25.643 -1.717 26.337 hybrid contribution -0.612 1.417 -0.264 1.566 sum -6.370 -24.226 -1.981 25.127 Atomic orbital electron populations 1.21698 0.94679 1.01670 1.02584 1.22149 0.97431 0.96224 1.03316 1.22255 0.92027 0.93884 0.88410 0.87599 1.86609 1.76819 1.57245 1.15578 1.21926 0.94096 0.82613 1.02959 1.45005 1.05813 1.09177 1.79987 1.15947 0.82700 0.83101 0.78709 1.91028 1.53510 1.42258 1.54089 1.42479 1.05451 1.08266 1.74905 1.17482 0.84632 0.86298 1.00243 1.67636 1.03197 1.31183 1.13689 1.22432 0.90376 0.96443 0.98626 1.21900 1.00864 0.92914 1.02698 1.21614 0.91477 1.01176 1.02822 1.19491 0.90201 0.87744 1.01385 1.86048 1.34587 1.15306 1.87396 1.23134 0.99298 0.77130 1.00477 1.19583 0.93928 0.93054 0.97935 1.20811 0.95888 0.88017 1.51957 0.90721 1.24938 0.99043 0.94937 0.94085 1.69887 1.35748 0.98103 1.49624 0.86751 0.85413 0.78154 0.78884 1.20062 1.21148 1.18781 0.92609 0.91949 0.92652 0.91211 0.90606 0.77546 0.91252 0.90654 0.76487 0.74329 0.82606 0.84708 0.83596 0.92320 0.92347 0.95379 0.95831 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.81 37.16 0.36 -0.42 16 2 C -0.15 -0.76 5.61 -26.73 -0.15 -0.91 16 3 C 0.09 0.58 3.00 -26.73 -0.08 0.50 16 4 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 5 O -0.56 -3.98 12.82 -35.23 -0.45 -4.43 16 6 C 0.11 0.90 5.31 -4.05 -0.02 0.88 16 7 N -0.74 -7.63 5.51 -65.23 -0.36 -7.99 16 8 C 0.70 10.06 8.53 -86.92 -0.74 9.32 16 9 O -0.54 -9.64 14.59 5.29 0.08 -9.57 16 10 N -0.66 -9.57 5.40 -15.67 -0.08 -9.66 16 11 C 0.35 5.70 7.45 -154.43 -1.15 4.55 16 12 N -0.44 -7.41 7.87 -12.22 -0.10 -7.50 16 13 C 0.08 1.05 11.17 -17.55 -0.20 0.86 16 14 C -0.16 -2.00 10.10 -39.44 -0.40 -2.40 16 15 C -0.14 -2.07 9.14 -39.17 -0.36 -2.42 16 16 C 0.06 1.03 6.72 -38.92 -0.26 0.77 16 17 O -0.32 -5.61 9.39 -19.69 -0.18 -5.80 16 18 C 0.07 1.39 4.70 37.16 0.17 1.57 16 19 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 20 C -0.53 -14.30 9.66 -34.44 -0.33 -14.63 16 21 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 23 N -0.90 -26.55 13.96 55.43 0.77 -25.77 16 24 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.37 7.82 -51.93 -0.41 -0.04 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.38 1.66 9.04 45.56 0.41 2.08 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 3.45 8.49 -40.82 -0.35 3.11 16 37 H 0.42 5.29 8.06 -40.82 -0.33 4.96 16 38 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.15 1.95 6.44 -52.49 -0.34 1.61 16 41 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 42 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 43 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 44 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -34.41 378.27 -8.63 -43.04 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.97 Total: 6.55 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.37 Total: -0.70 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.23 Total: -50.92 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.56 Total: -19.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.41 -8.63 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296866848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.070 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds