Wall clock time and date at job start Tue Mar 31 2020 14:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47411 * 2 1 4 4 C 1.53000 * 109.46891 * 239.99543 * 2 1 3 5 5 C 1.50699 * 109.47261 * 175.00028 * 4 2 1 6 6 H 1.08004 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00281 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00092 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00025 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47138 * 89.99875 * 9 7 5 11 11 H 1.48502 * 109.46872 * 210.00041 * 9 7 5 12 12 H 1.48502 * 109.47131 * 329.99839 * 9 7 5 13 13 N 1.46900 * 109.46977 * 120.00142 * 2 1 3 14 14 C 1.46957 * 110.99788 * 294.99381 * 13 2 1 15 15 C 1.53057 * 109.36113 * 183.19215 * 14 13 2 16 16 N 1.46958 * 109.36482 * 301.59939 * 15 14 13 17 17 C 1.46897 * 110.99903 * 183.19072 * 16 15 14 18 18 C 1.50701 * 109.46938 * 169.99733 * 17 16 15 19 19 C 1.38714 * 120.39847 * 90.00375 * 18 17 16 20 20 C 1.38566 * 118.43372 * 179.97438 * 19 18 17 21 21 C 1.38401 * 119.15292 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 119.63508 * 179.97438 * 21 20 19 23 23 N 1.31947 * 120.72693 * 0.26334 * 21 20 19 24 24 C 1.31909 * 121.70546 * 359.46963 * 23 21 20 25 25 C 1.46956 * 110.87864 * 59.32378 * 16 15 14 26 26 C 1.46958 * 111.00260 * 58.79631 * 13 2 1 27 27 H 1.08995 * 109.47017 * 59.99912 * 1 2 3 28 28 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46787 * 299.99869 * 1 2 3 30 30 H 1.09003 * 109.47482 * 295.00538 * 4 2 1 31 31 H 1.08997 * 109.47038 * 55.00170 * 4 2 1 32 32 H 0.96996 * 119.99712 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.48740 * 63.22792 * 14 13 2 34 34 H 1.08992 * 109.50825 * 303.17074 * 14 13 2 35 35 H 1.09004 * 109.48489 * 181.63608 * 15 14 13 36 36 H 1.08994 * 109.49135 * 61.56668 * 15 14 13 37 37 H 1.09000 * 109.47008 * 50.00265 * 17 16 15 38 38 H 1.08993 * 109.47654 * 290.00123 * 17 16 15 39 39 H 1.07996 * 120.78541 * 359.97438 * 19 18 17 40 40 H 1.08008 * 120.42646 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.60687 * 180.27392 * 24 23 21 42 42 H 1.08990 * 109.49166 * 60.64844 * 25 16 15 43 43 H 1.09004 * 109.48506 * 180.71276 * 25 16 15 44 44 H 1.08994 * 109.48762 * 296.77793 * 26 13 2 45 45 H 1.09004 * 109.48760 * 56.84671 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1929 -2.3583 8 7 5.5411 -1.1005 -2.4135 9 14 3.3012 -2.1069 -3.6966 10 1 2.9405 -1.1610 -4.7831 11 1 4.1596 -3.1873 -4.2454 12 1 2.0651 -2.6989 -3.1250 13 7 2.0197 -0.6925 1.1994 14 6 1.6486 0.0395 2.4185 15 6 2.2437 -0.6699 3.6372 16 7 1.7491 -2.0529 3.6857 17 6 2.2388 -2.7453 4.8851 18 6 1.5238 -4.0639 5.0310 19 6 2.0394 -5.2106 4.4451 20 6 1.3490 -6.4012 4.6055 21 6 0.1762 -6.4067 5.3405 22 17 -0.6993 -7.8912 5.5489 23 7 -0.2867 -5.2949 5.8796 24 6 0.3476 -4.1456 5.7510 25 6 2.1202 -2.7848 2.4666 26 6 1.5251 -2.0755 1.2479 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7515 -1.7716 -1.2056 31 1 1.6054 -0.2619 -2.1369 32 1 6.0253 -1.5067 -3.1493 33 1 0.5628 0.0686 2.5089 34 1 2.0364 1.0567 2.3645 35 1 1.9455 -0.1450 4.5449 36 1 3.3309 -0.6750 3.5602 37 1 2.0477 -2.1293 5.7638 38 1 3.3103 -2.9215 4.7910 39 1 2.9574 -5.1763 3.8772 40 1 1.7212 -7.3133 4.1628 41 1 -0.0596 -3.2570 6.2103 42 1 3.2059 -2.8140 2.3762 43 1 1.7320 -3.8020 2.5209 44 1 0.4379 -2.0704 1.3250 45 1 1.8232 -2.6004 0.3402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299391112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:32 Heat of formation + Delta-G solvation = 23.777071 kcal Electronic energy + Delta-G solvation = -25346.327123 eV Core-core repulsion = 21809.839745 eV Total energy + Delta-G solvation = -3536.487378 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46327 -40.39323 -37.93770 -37.44749 -34.96285 -33.96883 -33.05854 -31.87411 -31.74653 -29.62468 -28.00540 -25.55168 -25.07877 -24.61581 -24.19135 -22.62753 -21.48529 -19.98208 -18.76768 -18.41764 -17.76896 -17.40800 -16.66278 -16.35638 -16.11838 -15.72433 -15.59961 -15.48068 -15.26096 -14.88936 -14.74662 -14.45734 -14.21350 -14.13106 -13.84182 -13.40230 -13.39012 -13.02204 -12.70752 -12.67705 -12.60967 -12.43454 -12.31355 -12.27116 -12.07002 -11.77345 -11.67425 -11.43912 -11.31542 -11.03152 -10.90677 -10.67059 -10.65370 -9.90946 -9.33827 -8.87160 -8.17329 -6.15907 -0.14813 0.14725 0.78915 1.36702 1.38224 1.48680 2.41546 2.50139 3.06655 3.10634 3.24544 3.47665 3.66862 3.85383 3.91644 3.96751 4.00336 4.08797 4.28341 4.37245 4.40472 4.43725 4.48148 4.53988 4.59735 4.67061 4.70747 4.76659 4.86032 4.88808 4.94552 5.01117 5.07825 5.08008 5.12148 5.17219 5.26652 5.30634 5.48621 5.57522 5.75576 5.99636 6.04554 6.38193 6.44856 6.55696 6.67642 6.92215 7.44848 8.99968 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.003054 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.972969 B = 9166.401536 C =10038.620007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.062 0.938 4 C -0.006 4.006 5 C -0.486 4.486 6 H 0.036 0.964 7 C 0.000 4.000 8 N -0.957 5.957 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.537 5.537 14 C 0.055 3.945 15 C 0.065 3.935 16 N -0.533 5.533 17 C 0.098 3.902 18 C -0.119 4.119 19 C -0.060 4.060 20 C -0.152 4.152 21 C 0.155 3.845 22 Cl -0.038 7.038 23 N -0.505 5.505 24 C 0.133 3.867 25 C 0.065 3.935 26 C 0.062 3.938 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.029 0.971 37 H 0.113 0.887 38 H 0.052 0.948 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.184 0.816 42 H 0.027 0.973 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 -7.354 18.183 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.009 4.009 3 H 0.080 0.920 4 C -0.043 4.043 5 C -0.525 4.525 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.600 5.600 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.174 1.174 13 N -0.261 5.261 14 C -0.073 4.073 15 C -0.063 4.063 16 N -0.258 5.258 17 C -0.029 4.029 18 C -0.122 4.122 19 C -0.086 4.086 20 C -0.173 4.173 21 C -0.009 4.009 22 Cl -0.009 7.009 23 N -0.216 5.216 24 C -0.024 4.024 25 C -0.064 4.064 26 C -0.066 4.066 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.047 0.953 37 H 0.131 0.869 38 H 0.070 0.930 39 H 0.173 0.827 40 H 0.181 0.819 41 H 0.201 0.799 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.047 -7.558 18.584 23.401 hybrid contribution 0.897 -0.545 -1.515 1.843 sum -11.150 -8.103 17.069 21.939 Atomic orbital electron populations 1.22388 0.96714 1.01813 1.02374 1.21454 0.92155 0.97185 0.90079 0.91968 1.19661 0.94725 0.95976 0.93972 1.21255 0.91824 1.32376 1.07039 0.94584 1.25894 0.95438 0.97579 1.00616 1.70077 1.08387 1.48019 1.33492 0.85821 0.79299 0.78765 0.79663 1.19635 1.21568 1.17387 1.62166 1.59940 1.02088 1.01942 1.22196 0.98630 0.97322 0.89145 1.22163 0.97279 0.88327 0.98534 1.62238 1.59553 1.02381 1.01594 1.21016 0.96403 0.91259 0.94252 1.20931 0.96915 0.96178 0.98142 1.21836 0.99858 0.91157 0.95785 1.22036 0.94364 1.01071 0.99810 1.21850 0.92368 0.88982 0.97687 1.98398 1.76888 1.29413 1.96229 1.67025 1.34305 0.98949 1.21291 1.22867 0.90576 0.94250 0.94713 1.22105 0.97769 0.97403 0.89095 1.22037 0.97035 0.89908 0.97606 0.91847 0.92885 0.91606 0.96311 0.96494 0.93079 0.93654 0.90715 0.87471 0.95256 0.86909 0.93020 0.82662 0.81940 0.79947 0.95433 0.89900 0.94221 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.49 71.98 0.61 -4.55 16 2 C 0.10 3.74 2.30 44.92 0.10 3.85 16 3 H 0.06 2.47 8.11 -2.39 -0.02 2.45 16 4 C -0.01 -0.27 3.34 29.85 0.10 -0.17 16 5 C -0.49 -27.56 9.39 25.60 0.24 -27.32 16 6 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.96 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.94 44.48 27.47 68.60 1.88 46.36 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 13 N -0.54 -19.03 4.41 -870.46 -3.84 -22.87 16 14 C 0.06 1.50 5.25 86.31 0.45 1.96 16 15 C 0.06 1.45 5.61 86.31 0.48 1.94 16 16 N -0.53 -11.64 4.70 -900.29 -4.23 -15.87 16 17 C 0.10 1.58 5.14 85.56 0.44 2.02 16 18 C -0.12 -2.03 4.90 -19.77 -0.10 -2.12 16 19 C -0.06 -1.01 8.09 22.46 0.18 -0.82 16 20 C -0.15 -2.63 9.88 22.39 0.22 -2.40 16 21 C 0.15 3.22 7.27 84.71 0.62 3.84 16 22 Cl -0.04 -0.73 29.11 -2.72 -0.08 -0.81 16 23 N -0.50 -11.25 10.34 -186.69 -1.93 -13.18 16 24 C 0.13 2.41 10.86 84.66 0.92 3.32 16 25 C 0.06 1.75 5.28 86.31 0.46 2.21 16 26 C 0.06 2.05 4.82 86.31 0.42 2.46 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.57 6.45 -2.39 -0.02 1.55 16 29 H 0.07 1.70 6.59 -2.39 -0.02 1.68 16 30 H 0.02 0.86 5.18 -2.39 -0.01 0.85 16 31 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 32 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.05 1.16 6.60 -2.39 -0.02 1.15 16 34 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 35 H 0.11 1.73 8.07 -2.38 -0.02 1.71 16 36 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 1.30 7.98 -2.39 -0.02 1.28 16 38 H 0.05 0.85 8.07 -2.39 -0.02 0.84 16 39 H 0.16 2.23 8.03 -2.91 -0.02 2.21 16 40 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 2.03 5.97 -2.38 -0.01 2.02 16 44 H 0.04 1.24 6.46 -2.39 -0.02 1.22 16 45 H 0.06 2.29 6.07 -2.38 -0.01 2.28 16 Total: -1.00 -68.63 362.94 -1.37 -70.00 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.92 Total: 11.81 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.61 Total: -15.35 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -9.70 Total: -112.01 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -68.63 -1.37 -70.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299391112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.773 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds